Wall clock time and date at job start Sat Apr 11 2020 05:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00377 * 2 1 4 4 H 1.48492 * 109.47274 * 270.00527 * 3 2 1 5 5 H 1.48497 * 109.46630 * 30.00509 * 3 2 1 6 6 H 1.48498 * 109.46928 * 150.00003 * 3 2 1 7 7 C 1.37888 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99470 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46965 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47088 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.54266 * 68.37298 * 11 10 9 13 13 O 1.42097 * 110.54295 * 291.62112 * 11 10 9 14 14 N 1.65602 * 104.44532 * 179.97438 * 11 10 9 15 15 C 1.47423 * 125.64770 * 270.03888 * 14 11 10 16 16 C 1.54911 * 104.83076 * 155.83841 * 15 14 11 17 17 C 1.55158 * 101.58138 * 37.01134 * 16 15 14 18 18 C 1.47022 * 125.64693 * 90.00544 * 14 11 10 19 19 H 1.09002 * 109.87807 * 300.65958 * 18 14 11 20 20 C 1.52998 * 109.88814 * 61.66950 * 18 14 11 21 21 H 1.08998 * 109.46827 * 301.74150 * 20 18 14 22 22 O 1.42907 * 109.46592 * 61.73573 * 20 18 14 23 23 C 1.50696 * 109.47279 * 181.73481 * 20 18 14 24 24 C 1.38239 * 120.00293 * 279.72977 * 23 20 18 25 25 C 1.38229 * 119.99971 * 179.76609 * 24 23 20 26 26 C 1.38233 * 120.00084 * 0.48723 * 25 24 23 27 27 C 1.38240 * 120.00091 * 359.78872 * 26 25 24 28 28 C 1.38235 * 119.99836 * 359.95481 * 27 26 25 29 29 H 0.97002 * 120.00035 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47554 * 59.99813 * 9 7 2 31 31 H 1.09007 * 109.47231 * 299.99654 * 9 7 2 32 32 H 1.09003 * 109.46693 * 59.99254 * 10 9 7 33 33 H 1.09007 * 109.46650 * 299.99749 * 10 9 7 34 34 H 1.09004 * 110.36618 * 274.67460 * 15 14 11 35 35 H 1.08996 * 110.36999 * 36.99843 * 15 14 11 36 36 H 1.09004 * 111.00489 * 155.07823 * 16 15 14 37 37 H 1.08994 * 111.00500 * 278.89708 * 16 15 14 38 38 H 1.09001 * 110.72011 * 206.13279 * 17 16 15 39 39 H 1.09006 * 110.72411 * 82.85811 * 17 16 15 40 40 H 0.96706 * 113.99606 * 65.95574 * 22 20 18 41 41 H 1.08001 * 119.99603 * 359.97438 * 24 23 20 42 42 H 1.08005 * 120.00431 * 180.25180 * 25 24 23 43 43 H 1.08001 * 120.00123 * 179.77004 * 26 25 24 44 44 H 1.08000 * 120.00130 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00059 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6525 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 16 1.3380 -5.2331 0.0002 12 8 0.6635 -5.4200 -1.2365 13 8 0.6645 -5.4194 1.2375 14 7 2.5202 -6.3928 -0.0006 15 6 3.1332 -6.9939 -1.1989 16 6 4.5202 -7.4959 -0.7254 17 6 4.1974 -7.9982 0.7067 18 6 3.1326 -6.9928 1.1938 19 1 3.6015 -6.2171 1.7993 20 6 2.0668 -7.7207 2.0153 21 1 1.2825 -7.0181 2.2968 22 8 1.5028 -8.7767 1.2349 23 6 2.6962 -8.2955 3.2581 24 6 3.3990 -9.4840 3.1907 25 6 3.9803 -10.0087 4.3297 26 6 3.8505 -9.3502 5.5381 27 6 3.1429 -8.1646 5.6067 28 6 2.5659 -7.6372 4.4666 29 1 -0.4850 0.8401 0.0004 30 1 0.6238 -2.5567 -0.8902 31 1 0.6246 -2.5571 0.8898 32 1 2.8718 -3.6044 0.8894 33 1 2.8717 -3.6045 -0.8906 34 1 2.5294 -7.8283 -1.5559 35 1 3.2481 -6.2451 -1.9826 36 1 4.8760 -8.3118 -1.3545 37 1 5.2431 -6.6806 -0.7005 38 1 5.0844 -7.9571 1.3388 39 1 3.7892 -9.0085 0.6783 40 1 2.1252 -9.4866 1.0254 41 1 3.4966 -10.0008 2.2474 42 1 4.5329 -10.9352 4.2763 43 1 4.3016 -9.7621 6.4288 44 1 3.0410 -7.6503 6.5509 45 1 2.0128 -6.7111 4.5202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867617462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:08 Heat of formation + Delta-G solvation = -96.455926 kcal Electronic energy + Delta-G solvation = -28179.574154 eV Core-core repulsion = 24288.941846 eV Total energy + Delta-G solvation = -3890.632309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36488 -38.50297 -36.67658 -36.07775 -35.42036 -33.89761 -31.98866 -31.29527 -31.16537 -30.82806 -29.23496 -25.70787 -25.47839 -22.86689 -22.46928 -21.68703 -21.39890 -20.69613 -18.66929 -17.88107 -17.41828 -16.84746 -16.46034 -16.03988 -15.58713 -15.47125 -15.23404 -14.74822 -14.56741 -14.21883 -13.99064 -13.77688 -13.53070 -13.44699 -13.24386 -13.03355 -12.65298 -12.52187 -12.24113 -11.77154 -11.72622 -11.62742 -11.56270 -11.48036 -11.31551 -11.26877 -11.09275 -10.98040 -10.95117 -10.66452 -10.41699 -10.38573 -10.32231 -9.76089 -9.33212 -9.11622 -8.99483 -8.61236 -8.51307 -6.13248 -4.19000 0.72302 1.11741 1.20205 3.01750 3.25260 3.31445 3.34131 3.56456 4.19229 4.24873 4.31222 4.39591 4.45451 4.49948 4.61870 4.72044 4.78089 4.80348 4.93147 5.03693 5.15692 5.21789 5.29431 5.33683 5.40014 5.49208 5.59033 5.60548 5.65601 5.70113 5.72318 5.77521 5.80273 5.97492 6.03711 6.19903 6.24134 6.31634 6.47463 6.48345 6.49614 6.79075 7.28755 7.34772 7.54654 7.79563 8.16522 8.84317 9.45712 10.97768 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.003232 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.561816 B = 8660.038447 C = 9491.559296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.591 4.591 11 S 2.606 3.394 12 O -0.959 6.959 13 O -0.961 6.961 14 N -1.006 6.006 15 C 0.124 3.876 16 C -0.131 4.131 17 C -0.125 4.125 18 C 0.129 3.871 19 H 0.084 0.916 20 C 0.113 3.887 21 H 0.146 0.854 22 O -0.540 6.540 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.105 4.105 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.362 0.638 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.191 -20.960 5.799 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.706 3.294 12 O -0.949 6.949 13 O -0.951 6.951 14 N -0.841 5.841 15 C -0.002 4.002 16 C -0.170 4.170 17 C -0.164 4.164 18 C 0.022 3.978 19 H 0.101 0.899 20 C 0.052 3.948 21 H 0.163 0.837 22 O -0.346 6.346 23 C -0.109 4.109 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.141 4.141 27 C -0.135 4.135 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.210 0.790 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.478 -20.613 5.818 23.844 hybrid contribution 1.611 0.956 0.063 1.874 sum 12.089 -19.657 5.880 23.814 Atomic orbital electron populations 1.69955 1.06114 1.27221 1.49495 1.25075 0.94977 0.99542 0.94892 0.86466 0.79706 0.82847 0.78253 1.20447 1.20973 1.19760 1.20996 0.93041 0.89744 1.52225 0.92066 1.18965 0.92690 0.90551 0.98871 1.30526 1.13772 1.18175 1.09956 1.05325 0.74173 0.75748 0.74156 1.93538 1.70819 1.85149 1.45424 1.93448 1.71231 1.85026 1.45407 1.58824 1.58641 1.55024 1.11655 1.21919 0.92847 0.98287 0.87130 1.22806 0.96998 1.01290 0.95880 1.22716 0.98180 0.98392 0.97095 1.21908 0.93114 0.95841 0.86983 0.89853 1.21913 0.96969 0.89585 0.86324 0.83704 1.86749 1.40744 1.33643 1.73468 1.20546 0.98505 0.95902 0.95976 1.20949 0.98010 0.95874 0.98538 1.21081 1.00037 0.99894 0.92773 1.21171 0.99373 0.95752 0.97796 1.21195 0.97693 0.96158 0.98463 1.21182 0.99102 1.00161 0.91905 0.92500 0.94883 0.94819 0.86352 0.86321 0.91227 0.90629 0.90075 0.90415 0.89960 0.90928 0.79000 0.86222 0.86123 0.86198 0.85855 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.59 -11.52 6.12 37.16 0.23 -11.29 16 11 S 2.61 48.64 5.64 -107.50 -0.61 48.03 16 12 O -0.96 -20.84 17.60 -57.54 -1.01 -21.85 16 13 O -0.96 -19.80 14.97 -57.54 -0.86 -20.66 16 14 N -1.01 -14.10 3.23 -104.42 -0.34 -14.43 16 15 C 0.12 1.40 6.89 -2.53 -0.02 1.38 16 16 C -0.13 -1.04 7.09 -24.58 -0.17 -1.22 16 17 C -0.13 -1.02 5.04 -24.89 -0.13 -1.15 16 18 C 0.13 1.51 2.92 -66.95 -0.20 1.32 16 19 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 20 C 0.11 1.47 2.98 -27.89 -0.08 1.39 16 21 H 0.15 2.36 5.37 -51.93 -0.28 2.08 16 22 O -0.54 -7.13 13.06 -35.23 -0.46 -7.59 16 23 C -0.11 -1.20 4.86 -104.62 -0.51 -1.71 16 24 C -0.12 -1.03 8.15 -39.58 -0.32 -1.35 16 25 C -0.12 -0.98 10.05 -39.59 -0.40 -1.37 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 28 C -0.11 -1.18 9.67 -39.58 -0.38 -1.56 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 33 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.49 4.50 -51.93 -0.23 0.25 16 40 H 0.36 3.27 5.57 45.56 0.25 3.52 16 41 H 0.12 0.79 5.34 -52.49 -0.28 0.51 16 42 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.13 1.44 8.04 -52.49 -0.42 1.02 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -35.75 372.50 -11.27 -47.02 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.00 Total: 4.62 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -3.33 Total: -31.13 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.40 Total: -40.25 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -2.33 Total: -50.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 48.64 SS G_CDS: -0.61 Total: 48.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.75 -11.27 -47.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867617462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.434 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds