Wall clock time and date at job start Sat Apr 11 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00377 * 2 1 4 4 H 1.48492 * 109.47274 * 270.00527 * 3 2 1 5 5 H 1.48497 * 109.46630 * 30.00509 * 3 2 1 6 6 H 1.48498 * 109.46928 * 150.00003 * 3 2 1 7 7 C 1.37888 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99470 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46965 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47088 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.54266 * 68.37298 * 11 10 9 13 13 O 1.42097 * 110.54295 * 291.62112 * 11 10 9 14 14 N 1.65602 * 104.44532 * 179.97438 * 11 10 9 15 15 C 1.47423 * 125.64770 * 270.03888 * 14 11 10 16 16 C 1.54911 * 104.83076 * 155.83841 * 15 14 11 17 17 C 1.55158 * 101.58138 * 37.01134 * 16 15 14 18 18 C 1.47022 * 125.64693 * 90.00544 * 14 11 10 19 19 H 1.09002 * 109.87807 * 300.65958 * 18 14 11 20 20 C 1.52998 * 109.88814 * 61.66950 * 18 14 11 21 21 H 1.08998 * 109.46827 * 301.74150 * 20 18 14 22 22 O 1.42907 * 109.46592 * 61.73573 * 20 18 14 23 23 C 1.50696 * 109.47279 * 181.73481 * 20 18 14 24 24 C 1.38239 * 120.00293 * 279.72977 * 23 20 18 25 25 C 1.38229 * 119.99971 * 179.76609 * 24 23 20 26 26 C 1.38233 * 120.00084 * 0.48723 * 25 24 23 27 27 C 1.38240 * 120.00091 * 359.78872 * 26 25 24 28 28 C 1.38235 * 119.99836 * 359.95481 * 27 26 25 29 29 H 0.97002 * 120.00035 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47554 * 59.99813 * 9 7 2 31 31 H 1.09007 * 109.47231 * 299.99654 * 9 7 2 32 32 H 1.09003 * 109.46693 * 59.99254 * 10 9 7 33 33 H 1.09007 * 109.46650 * 299.99749 * 10 9 7 34 34 H 1.09004 * 110.36618 * 274.67460 * 15 14 11 35 35 H 1.08996 * 110.36999 * 36.99843 * 15 14 11 36 36 H 1.09004 * 111.00489 * 155.07823 * 16 15 14 37 37 H 1.08994 * 111.00500 * 278.89708 * 16 15 14 38 38 H 1.09001 * 110.72011 * 206.13279 * 17 16 15 39 39 H 1.09006 * 110.72411 * 82.85811 * 17 16 15 40 40 H 0.96706 * 113.99606 * 65.95574 * 22 20 18 41 41 H 1.08001 * 119.99603 * 359.97438 * 24 23 20 42 42 H 1.08005 * 120.00431 * 180.25180 * 25 24 23 43 43 H 1.08001 * 120.00123 * 179.77004 * 26 25 24 44 44 H 1.08000 * 120.00130 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00059 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6525 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 16 1.3380 -5.2331 0.0002 12 8 0.6635 -5.4200 -1.2365 13 8 0.6645 -5.4194 1.2375 14 7 2.5202 -6.3928 -0.0006 15 6 3.1332 -6.9939 -1.1989 16 6 4.5202 -7.4959 -0.7254 17 6 4.1974 -7.9982 0.7067 18 6 3.1326 -6.9928 1.1938 19 1 3.6015 -6.2171 1.7993 20 6 2.0668 -7.7207 2.0153 21 1 1.2825 -7.0181 2.2968 22 8 1.5028 -8.7767 1.2349 23 6 2.6962 -8.2955 3.2581 24 6 3.3990 -9.4840 3.1907 25 6 3.9803 -10.0087 4.3297 26 6 3.8505 -9.3502 5.5381 27 6 3.1429 -8.1646 5.6067 28 6 2.5659 -7.6372 4.4666 29 1 -0.4850 0.8401 0.0004 30 1 0.6238 -2.5567 -0.8902 31 1 0.6246 -2.5571 0.8898 32 1 2.8718 -3.6044 0.8894 33 1 2.8717 -3.6045 -0.8906 34 1 2.5294 -7.8283 -1.5559 35 1 3.2481 -6.2451 -1.9826 36 1 4.8760 -8.3118 -1.3545 37 1 5.2431 -6.6806 -0.7005 38 1 5.0844 -7.9571 1.3388 39 1 3.7892 -9.0085 0.6783 40 1 2.1252 -9.4866 1.0254 41 1 3.4966 -10.0008 2.2474 42 1 4.5329 -10.9352 4.2763 43 1 4.3016 -9.7621 6.4288 44 1 3.0410 -7.6503 6.5509 45 1 2.0128 -6.7111 4.5202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867617462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:06 Heat of formation + Delta-G solvation = -122.436751 kcal Electronic energy + Delta-G solvation = -28180.700767 eV Core-core repulsion = 24288.941846 eV Total energy + Delta-G solvation = -3891.758922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.19874 -39.28692 -38.25618 -37.09155 -37.01739 -35.93839 -33.17214 -32.80311 -32.10115 -31.60468 -30.04711 -27.64336 -26.42075 -23.85515 -23.56605 -22.94248 -22.38650 -21.56353 -19.96955 -19.22452 -18.63675 -18.19814 -17.72673 -17.12476 -16.87184 -16.59158 -16.52364 -16.39757 -15.62417 -15.25977 -15.05224 -14.95642 -14.61705 -14.48113 -14.33808 -14.12692 -13.79298 -13.77190 -13.43729 -13.22098 -13.20631 -12.97623 -12.94967 -12.82693 -12.61828 -12.51006 -12.30501 -12.16884 -12.04563 -11.99356 -11.80511 -11.62506 -11.56877 -11.26742 -11.10300 -10.67951 -9.96218 -9.80663 -9.55726 -8.28869 -6.43860 -0.78955 0.39962 0.50962 1.38845 1.41246 1.52419 1.70764 2.35900 2.80341 2.88004 3.02287 3.04445 3.38771 3.53017 3.69121 3.77494 3.95024 3.97429 4.00813 4.08666 4.12472 4.24476 4.30882 4.38711 4.53031 4.63396 4.66020 4.68416 4.74992 4.92876 4.94701 4.99706 5.05317 5.11116 5.18982 5.20123 5.20927 5.23068 5.40526 5.49143 5.58004 5.63981 5.64435 5.69541 6.01912 6.11737 6.69466 6.77728 7.26531 8.83555 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.003232 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.561816 B = 8660.038447 C = 9491.559296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.005 4.005 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.588 4.588 11 S 2.625 3.375 12 O -0.995 6.995 13 O -0.988 6.988 14 N -1.001 6.001 15 C 0.107 3.893 16 C -0.118 4.118 17 C -0.116 4.116 18 C 0.120 3.880 19 H 0.085 0.915 20 C 0.113 3.887 21 H 0.102 0.898 22 O -0.560 6.560 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.133 4.133 29 H 0.268 0.732 30 H 0.004 0.996 31 H 0.006 0.994 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.380 0.620 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.145 0.855 44 H 0.135 0.865 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.143 -22.956 6.027 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.580 4.580 8 H 0.094 0.906 9 C -0.017 4.017 10 C -0.720 4.720 11 S 2.724 3.276 12 O -0.985 6.985 13 O -0.978 6.978 14 N -0.839 5.839 15 C -0.017 4.017 16 C -0.156 4.156 17 C -0.154 4.154 18 C 0.013 3.987 19 H 0.103 0.897 20 C 0.053 3.947 21 H 0.120 0.880 22 O -0.368 6.368 23 C -0.122 4.122 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.144 4.144 28 C -0.151 4.151 29 H 0.077 0.923 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.231 0.769 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.163 0.837 44 H 0.153 0.847 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.443 -22.612 6.043 27.503 hybrid contribution 0.362 1.447 0.032 1.492 sum 14.805 -21.165 6.075 26.534 Atomic orbital electron populations 1.70109 1.08154 1.28431 1.50686 1.26164 0.95888 1.04012 0.94232 0.85274 0.78634 0.77399 0.78731 1.19463 1.20722 1.18037 1.21498 0.93968 0.90673 1.51814 0.90576 1.18812 0.93548 0.93146 0.96205 1.30407 1.12821 1.16699 1.12032 1.04370 0.74481 0.75914 0.72795 1.93482 1.72438 1.85752 1.46871 1.93431 1.72667 1.85406 1.46293 1.58395 1.58012 1.53516 1.13977 1.22296 0.94956 0.98289 0.86177 1.22814 0.94582 1.02410 0.95836 1.22771 0.97425 0.97942 0.97309 1.22211 0.93658 0.96806 0.85994 0.89708 1.21628 0.96203 0.89235 0.87674 0.88023 1.86707 1.42102 1.34350 1.73646 1.20397 0.99828 0.97217 0.94758 1.21208 0.97039 0.94706 1.00172 1.21480 0.99302 1.00622 0.92090 1.21536 0.98476 0.94978 0.99149 1.21389 0.97787 0.96972 0.98268 1.21229 1.00407 1.00322 0.93185 0.92309 0.97778 0.97604 0.84264 0.84195 0.91142 0.90612 0.87008 0.89744 0.87875 0.89089 0.76927 0.83660 0.83043 0.83707 0.84750 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.98 43.66 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.02 1.18 4.98 29.85 0.15 1.33 16 10 C -0.59 -23.50 6.12 71.98 0.44 -23.05 16 11 S 2.62 102.67 5.64 -56.49 -0.32 102.35 16 12 O -0.99 -45.37 17.60 -127.65 -2.25 -47.62 16 13 O -0.99 -43.74 14.97 -127.65 -1.91 -45.65 16 14 N -1.00 -27.79 3.23 -484.27 -1.57 -29.36 16 15 C 0.11 2.25 6.89 86.86 0.60 2.84 16 16 C -0.12 -1.42 7.09 31.99 0.23 -1.20 16 17 C -0.12 -1.47 5.04 31.78 0.16 -1.31 16 18 C 0.12 2.70 2.92 45.34 0.13 2.83 16 19 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 20 C 0.11 3.00 2.98 29.85 0.09 3.09 16 21 H 0.10 3.60 5.37 -2.39 -0.01 3.58 16 22 O -0.56 -14.52 13.06 -148.98 -1.95 -16.47 16 23 C -0.12 -2.62 4.86 -19.87 -0.10 -2.71 16 24 C -0.11 -1.68 8.15 22.27 0.18 -1.50 16 25 C -0.12 -1.47 10.05 22.27 0.22 -1.24 16 26 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 27 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 28 C -0.13 -3.07 9.67 22.27 0.22 -2.85 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 33 H 0.14 4.91 8.14 -2.39 -0.02 4.89 16 34 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 0.81 4.50 -2.38 -0.01 0.80 16 40 H 0.38 6.03 5.57 -74.05 -0.41 5.62 16 41 H 0.15 1.29 5.34 -2.91 -0.02 1.28 16 42 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 43 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.11 2.81 8.04 -2.91 -0.02 2.79 16 Total: -1.00 -82.38 372.50 -1.63 -84.00 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.59 Total: 22.06 kcal Atomic # 6 Polarization: -60.96 SS G_CDS: 3.46 Total: -57.49 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.28 Total: -86.87 kcal Atomic # 8 Polarization: -103.63 SS G_CDS: -6.10 Total: -109.74 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 102.67 SS G_CDS: -0.32 Total: 102.35 kcal Total: -82.38 -1.63 -84.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867617462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.432 kcal (2) G-P(sol) polarization free energy of solvation -82.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds