Wall clock time and date at job start Sat Apr 11 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47004 * 239.99600 * 3 2 1 5 5 H 1.48507 * 109.47185 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47730 * 119.99257 * 3 2 1 7 7 C 1.40304 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99940 * 156.93360 * 7 2 1 9 9 C 1.40538 * 120.00329 * 336.94168 * 7 2 1 10 10 C 1.44186 * 123.71266 * 335.32864 * 9 7 2 11 11 C 1.32759 * 114.43127 * 179.75979 * 10 9 7 12 12 S 1.75471 * 111.36204 * 0.49036 * 11 10 9 13 13 C 1.39544 * 123.71574 * 155.61898 * 9 7 2 14 14 C 1.46233 * 125.22845 * 0.02904 * 13 9 7 15 15 O 1.21754 * 120.00437 * 359.97438 * 14 13 9 16 16 N 1.34776 * 119.99784 * 179.97438 * 14 13 9 17 17 C 1.46502 * 120.00143 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47356 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47060 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47137 * 179.97438 * 19 18 17 21 21 C 1.42897 * 114.00026 * 179.97438 * 20 19 18 22 22 H 1.08999 * 109.48208 * 310.02805 * 21 20 19 23 23 C 1.53097 * 109.47844 * 190.00086 * 21 20 19 24 24 C 1.53183 * 109.16025 * 182.40965 * 23 21 20 25 25 C 1.53184 * 109.03563 * 56.98218 * 24 23 21 26 26 C 1.53091 * 109.16176 * 303.01927 * 25 24 23 27 27 O 1.42901 * 109.47907 * 70.06276 * 21 20 19 28 28 H 0.97009 * 119.99422 * 174.21538 * 1 2 3 29 29 H 1.08004 * 122.78699 * 359.97325 * 10 9 7 30 30 H 1.08007 * 124.32264 * 180.17770 * 11 10 9 31 31 H 0.97001 * 120.00248 * 0.02562 * 16 14 13 32 32 H 1.09001 * 109.46990 * 300.00288 * 17 16 14 33 33 H 1.09005 * 109.47268 * 59.99478 * 17 16 14 34 34 H 1.08997 * 109.46957 * 299.99877 * 18 17 16 35 35 H 1.09000 * 109.47231 * 60.00482 * 18 17 16 36 36 H 1.09001 * 109.47118 * 300.00260 * 19 18 17 37 37 H 1.08994 * 109.47066 * 59.99877 * 19 18 17 38 38 H 1.08992 * 109.52177 * 302.31564 * 23 21 20 39 39 H 1.09003 * 109.51940 * 62.51113 * 23 21 20 40 40 H 1.08995 * 109.54013 * 176.85087 * 24 23 21 41 41 H 1.09000 * 109.54636 * 297.11491 * 24 23 21 42 42 H 1.09000 * 109.52191 * 62.92252 * 25 24 23 43 43 H 1.08995 * 109.52121 * 183.11284 * 25 24 23 44 44 H 1.09001 * 109.47751 * 177.59182 * 26 25 24 45 45 H 1.08996 * 109.48122 * 297.61135 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0940 1.6967 1.2125 7 6 2.0080 -1.2150 0.0005 8 1 3.0233 -1.2525 -0.3659 9 6 1.3897 -2.3834 0.4777 10 6 0.3011 -2.3837 1.4233 11 6 -0.1472 -3.5914 1.7441 12 16 0.7504 -4.8484 0.9114 13 6 1.7654 -3.6711 0.0931 14 6 2.8394 -3.9912 -0.8463 15 8 3.4856 -3.0964 -1.3603 16 7 3.1140 -5.2768 -1.1431 17 6 4.1896 -5.5976 -2.0846 18 6 4.2925 -7.1159 -2.2435 19 6 5.4162 -7.4508 -3.2264 20 8 5.5127 -8.8689 -3.3744 21 6 6.5373 -9.2907 -4.2766 22 1 6.4468 -8.7398 -5.2127 23 6 6.3911 -10.7899 -4.5502 24 6 7.5280 -11.2464 -5.4698 25 6 8.8692 -10.9032 -4.8142 26 6 8.9197 -9.3997 -4.5303 27 8 7.8180 -9.0366 -3.6957 28 1 -0.4850 -0.8359 -0.0847 29 1 -0.1173 -1.4766 1.8338 30 1 -0.9575 -3.7769 2.4337 31 1 2.5991 -5.9898 -0.7339 32 1 3.9728 -5.1445 -3.0520 33 1 5.1338 -5.2077 -1.7043 34 1 4.5095 -7.5685 -1.2761 35 1 3.3485 -7.5062 -2.6238 36 1 5.1997 -6.9980 -4.1940 37 1 6.3601 -7.0606 -2.8458 38 1 6.4408 -11.3384 -3.6097 39 1 5.4329 -10.9801 -5.0338 40 1 7.4623 -12.3235 -5.6237 41 1 7.4493 -10.7343 -6.4288 42 1 8.9690 -11.4540 -3.8789 43 1 9.6832 -11.1745 -5.4864 44 1 9.8543 -9.1564 -4.0249 45 1 8.8608 -8.8502 -5.4698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867925174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:18 Heat of formation + Delta-G solvation = -136.049521 kcal Electronic energy + Delta-G solvation = -25951.822935 eV Core-core repulsion = 22059.473719 eV Total energy + Delta-G solvation = -3892.349216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98043 -38.43336 -37.41846 -36.42469 -34.54928 -34.09497 -33.03521 -31.71947 -30.34056 -28.94672 -26.46008 -25.27906 -24.39562 -23.53775 -22.43154 -21.58129 -20.64651 -20.05628 -19.05601 -17.81732 -17.45878 -17.09057 -16.38174 -16.15692 -15.58926 -15.22474 -14.94589 -14.58907 -14.50003 -14.09603 -14.06753 -13.86980 -13.72455 -13.19311 -13.10663 -13.09594 -12.75368 -12.17022 -12.00920 -11.86603 -11.73313 -11.62941 -11.45792 -11.40337 -11.22096 -11.14159 -11.01109 -10.81515 -10.68554 -10.43429 -10.09735 -9.98982 -9.85296 -9.74968 -9.12444 -8.50448 -8.25950 -7.75730 -7.35296 -7.31822 -4.57359 2.04737 2.94977 2.95896 3.06234 3.11407 3.32834 3.56218 3.61292 3.68920 3.91709 4.17580 4.33595 4.36739 4.41834 4.48243 4.61713 4.64525 4.92943 4.95443 5.08878 5.10811 5.13520 5.23989 5.28014 5.32718 5.42995 5.48266 5.56959 5.60678 5.65148 5.80084 5.83672 5.84923 6.17453 6.23036 6.44165 6.73958 6.79022 6.99010 6.99832 7.20362 7.28326 7.34049 7.78111 7.95188 8.43264 8.50884 8.76047 9.57230 9.76409 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.001932 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.435505 B =14490.510196 C =15690.943989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.029 3.971 3 Si 1.073 2.927 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.426 4.426 8 H 0.110 0.890 9 C 0.112 3.888 10 C -0.141 4.141 11 C -0.187 4.187 12 S -0.036 6.036 13 C -0.438 4.438 14 C 0.600 3.400 15 O -0.565 6.565 16 N -0.751 5.751 17 C 0.133 3.867 18 C -0.128 4.128 19 C 0.067 3.933 20 O -0.365 6.365 21 C 0.256 3.744 22 H 0.053 0.947 23 C -0.141 4.141 24 C -0.120 4.120 25 C -0.161 4.161 26 C 0.071 3.929 27 O -0.404 6.404 28 H 0.300 0.700 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.390 0.610 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.941 -16.677 -8.264 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.195 4.195 3 Si 0.895 3.105 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.456 4.456 8 H 0.128 0.872 9 C 0.101 3.899 10 C -0.174 4.174 11 C -0.321 4.321 12 S 0.219 5.781 13 C -0.557 4.557 14 C 0.397 3.603 15 O -0.448 6.448 16 N -0.405 5.405 17 C 0.008 3.992 18 C -0.166 4.166 19 C -0.010 4.010 20 O -0.284 6.284 21 C 0.160 3.840 22 H 0.070 0.930 23 C -0.179 4.179 24 C -0.158 4.158 25 C -0.198 4.198 26 C -0.006 4.006 27 O -0.326 6.326 28 H 0.114 0.886 29 H 0.147 0.853 30 H 0.159 0.841 31 H 0.223 0.777 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.953 -16.010 -8.310 21.103 hybrid contribution -0.095 -0.678 -0.109 0.693 sum 10.858 -16.688 -8.419 21.617 Atomic orbital electron populations 1.70439 1.08400 1.34462 1.26349 1.27555 0.95645 1.05267 0.91047 0.83517 0.75604 0.72695 0.78706 1.19420 1.19666 1.19580 1.20964 1.02937 0.91583 1.30115 0.87225 1.17893 0.89511 0.92275 0.90210 1.21559 0.98967 0.96986 0.99929 1.24935 1.04805 0.96587 1.05773 1.82755 1.34190 1.12480 1.48653 1.22419 1.16536 0.94353 1.22350 1.16782 0.82357 0.80871 0.80310 1.90652 1.52683 1.46198 1.55287 1.45779 1.37776 1.08211 1.48736 1.20882 0.91658 0.92701 0.93920 1.21686 0.98744 0.96111 1.00079 1.22424 0.99218 0.80396 0.98974 1.87994 1.50234 1.23371 1.66833 1.22907 0.77972 0.94127 0.89002 0.92974 1.22026 0.99811 0.94615 1.01443 1.21596 0.93848 1.01967 0.98392 1.22256 0.98061 0.97501 1.02008 1.22510 0.89278 0.94031 0.94733 1.87839 1.14794 1.84774 1.45186 0.88596 0.85264 0.84137 0.77706 0.92257 0.92167 0.90504 0.90652 0.92927 0.91946 0.90025 0.90008 0.90674 0.91557 0.90688 0.90501 0.88471 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.58 12.50 55.57 0.69 -18.89 16 2 C 0.03 0.73 5.19 -17.28 -0.09 0.64 16 3 Si 1.07 21.40 29.99 -169.99 -5.10 16.30 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.43 -11.59 8.42 -37.94 -0.32 -11.91 16 8 H 0.11 3.17 6.16 -52.48 -0.32 2.84 16 9 C 0.11 2.98 5.37 -106.21 -0.57 2.41 16 10 C -0.14 -3.35 8.24 -39.12 -0.32 -3.67 16 11 C -0.19 -3.95 11.07 28.86 0.32 -3.63 16 12 S -0.04 -0.78 22.25 -107.50 -2.39 -3.17 16 13 C -0.44 -11.19 6.51 -35.89 -0.23 -11.42 16 14 C 0.60 15.06 7.76 -13.05 -0.10 14.95 16 15 O -0.56 -15.85 14.46 5.14 0.07 -15.78 16 16 N -0.75 -14.99 5.55 -61.75 -0.34 -15.33 16 17 C 0.13 2.21 5.67 -4.04 -0.02 2.19 16 18 C -0.13 -1.69 5.70 -26.73 -0.15 -1.84 16 19 C 0.07 0.81 5.81 37.16 0.22 1.03 16 20 O -0.37 -4.63 10.25 -59.04 -0.61 -5.23 16 21 C 0.26 2.65 3.16 37.21 0.12 2.77 16 22 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 23 C -0.14 -1.15 5.79 -26.59 -0.15 -1.30 16 24 C -0.12 -0.71 6.03 -26.54 -0.16 -0.87 16 25 C -0.16 -0.95 6.14 -26.59 -0.16 -1.11 16 26 C 0.07 0.52 6.84 37.20 0.25 0.78 16 27 O -0.40 -4.52 10.25 -59.04 -0.60 -5.13 16 28 H 0.30 7.74 6.48 -40.82 -0.26 7.47 16 29 H 0.13 3.01 6.94 -52.48 -0.36 2.64 16 30 H 0.14 2.48 8.06 -52.48 -0.42 2.05 16 31 H 0.39 7.09 7.55 -40.82 -0.31 6.78 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.78 7.89 -51.93 -0.41 0.37 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -31.14 381.27 -10.71 -41.86 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.80 Total: 10.62 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.38 Total: -11.00 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.35 Total: -34.22 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.14 Total: -26.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.10 Total: 16.30 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.39 Total: -3.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.14 -10.71 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867925174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.192 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds