Wall clock time and date at job start Sat Apr 11 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47004 * 239.99600 * 3 2 1 5 5 H 1.48507 * 109.47185 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47730 * 119.99257 * 3 2 1 7 7 C 1.40304 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99940 * 156.93360 * 7 2 1 9 9 C 1.40538 * 120.00329 * 336.94168 * 7 2 1 10 10 C 1.44186 * 123.71266 * 335.32864 * 9 7 2 11 11 C 1.32759 * 114.43127 * 179.75979 * 10 9 7 12 12 S 1.75471 * 111.36204 * 0.49036 * 11 10 9 13 13 C 1.39544 * 123.71574 * 155.61898 * 9 7 2 14 14 C 1.46233 * 125.22845 * 0.02904 * 13 9 7 15 15 O 1.21754 * 120.00437 * 359.97438 * 14 13 9 16 16 N 1.34776 * 119.99784 * 179.97438 * 14 13 9 17 17 C 1.46502 * 120.00143 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47356 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47060 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47137 * 179.97438 * 19 18 17 21 21 C 1.42897 * 114.00026 * 179.97438 * 20 19 18 22 22 H 1.08999 * 109.48208 * 310.02805 * 21 20 19 23 23 C 1.53097 * 109.47844 * 190.00086 * 21 20 19 24 24 C 1.53183 * 109.16025 * 182.40965 * 23 21 20 25 25 C 1.53184 * 109.03563 * 56.98218 * 24 23 21 26 26 C 1.53091 * 109.16176 * 303.01927 * 25 24 23 27 27 O 1.42901 * 109.47907 * 70.06276 * 21 20 19 28 28 H 0.97009 * 119.99422 * 174.21538 * 1 2 3 29 29 H 1.08004 * 122.78699 * 359.97325 * 10 9 7 30 30 H 1.08007 * 124.32264 * 180.17770 * 11 10 9 31 31 H 0.97001 * 120.00248 * 0.02562 * 16 14 13 32 32 H 1.09001 * 109.46990 * 300.00288 * 17 16 14 33 33 H 1.09005 * 109.47268 * 59.99478 * 17 16 14 34 34 H 1.08997 * 109.46957 * 299.99877 * 18 17 16 35 35 H 1.09000 * 109.47231 * 60.00482 * 18 17 16 36 36 H 1.09001 * 109.47118 * 300.00260 * 19 18 17 37 37 H 1.08994 * 109.47066 * 59.99877 * 19 18 17 38 38 H 1.08992 * 109.52177 * 302.31564 * 23 21 20 39 39 H 1.09003 * 109.51940 * 62.51113 * 23 21 20 40 40 H 1.08995 * 109.54013 * 176.85087 * 24 23 21 41 41 H 1.09000 * 109.54636 * 297.11491 * 24 23 21 42 42 H 1.09000 * 109.52191 * 62.92252 * 25 24 23 43 43 H 1.08995 * 109.52121 * 183.11284 * 25 24 23 44 44 H 1.09001 * 109.47751 * 177.59182 * 26 25 24 45 45 H 1.08996 * 109.48122 * 297.61135 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0940 1.6967 1.2125 7 6 2.0080 -1.2150 0.0005 8 1 3.0233 -1.2525 -0.3659 9 6 1.3897 -2.3834 0.4777 10 6 0.3011 -2.3837 1.4233 11 6 -0.1472 -3.5914 1.7441 12 16 0.7504 -4.8484 0.9114 13 6 1.7654 -3.6711 0.0931 14 6 2.8394 -3.9912 -0.8463 15 8 3.4856 -3.0964 -1.3603 16 7 3.1140 -5.2768 -1.1431 17 6 4.1896 -5.5976 -2.0846 18 6 4.2925 -7.1159 -2.2435 19 6 5.4162 -7.4508 -3.2264 20 8 5.5127 -8.8689 -3.3744 21 6 6.5373 -9.2907 -4.2766 22 1 6.4468 -8.7398 -5.2127 23 6 6.3911 -10.7899 -4.5502 24 6 7.5280 -11.2464 -5.4698 25 6 8.8692 -10.9032 -4.8142 26 6 8.9197 -9.3997 -4.5303 27 8 7.8180 -9.0366 -3.6957 28 1 -0.4850 -0.8359 -0.0847 29 1 -0.1173 -1.4766 1.8338 30 1 -0.9575 -3.7769 2.4337 31 1 2.5991 -5.9898 -0.7339 32 1 3.9728 -5.1445 -3.0520 33 1 5.1338 -5.2077 -1.7043 34 1 4.5095 -7.5685 -1.2761 35 1 3.3485 -7.5062 -2.6238 36 1 5.1997 -6.9980 -4.1940 37 1 6.3601 -7.0606 -2.8458 38 1 6.4408 -11.3384 -3.6097 39 1 5.4329 -10.9801 -5.0338 40 1 7.4623 -12.3235 -5.6237 41 1 7.4493 -10.7343 -6.4288 42 1 8.9690 -11.4540 -3.8789 43 1 9.6832 -11.1745 -5.4864 44 1 9.8543 -9.1564 -4.0249 45 1 8.8608 -8.8502 -5.4698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867925174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:17 Heat of formation + Delta-G solvation = -155.189430 kcal Electronic energy + Delta-G solvation = -25952.652904 eV Core-core repulsion = 22059.473719 eV Total energy + Delta-G solvation = -3893.179184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71410 -40.26609 -38.47853 -38.13435 -36.11995 -34.90700 -34.69846 -33.02581 -31.22760 -30.69989 -28.12080 -26.42067 -25.40124 -24.27898 -24.11396 -22.79536 -21.89380 -21.23908 -20.91735 -19.47066 -18.46000 -18.17671 -17.88991 -17.05995 -16.76028 -16.45435 -16.33469 -15.80274 -15.69898 -15.53484 -15.49907 -15.23719 -14.93402 -14.60652 -14.29767 -14.05165 -13.80841 -13.74426 -13.69422 -13.26504 -12.99881 -12.78197 -12.68067 -12.50727 -12.43166 -12.19186 -12.05734 -12.02715 -11.89440 -11.88126 -11.53478 -11.50221 -10.97151 -10.87768 -10.52293 -10.48035 -10.03130 -9.66874 -9.25723 -9.13908 -6.54596 0.18419 1.20327 1.38507 1.47147 1.65942 1.79502 1.89396 2.07074 2.25206 2.48362 2.58453 2.97355 3.13756 3.74840 3.81209 3.86918 3.89254 3.94839 3.96885 4.06462 4.19293 4.21076 4.38240 4.42850 4.47707 4.51052 4.62243 4.63053 4.76230 4.81917 4.88499 4.98771 5.01928 5.05113 5.07387 5.10960 5.18472 5.31337 5.33716 5.36089 5.62961 5.85863 5.92346 5.95324 6.25083 6.48709 6.61050 6.88758 7.65562 7.80562 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.001932 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.435505 B =14490.510196 C =15690.943989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.002 3.998 3 Si 1.118 2.882 4 H -0.269 1.269 5 H -0.257 1.257 6 H -0.258 1.258 7 C -0.465 4.465 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.170 4.170 11 C -0.168 4.168 12 S 0.028 5.972 13 C -0.474 4.474 14 C 0.589 3.411 15 O -0.605 6.605 16 N -0.737 5.737 17 C 0.133 3.867 18 C -0.113 4.113 19 C 0.071 3.929 20 O -0.382 6.382 21 C 0.247 3.753 22 H 0.063 0.937 23 C -0.139 4.139 24 C -0.118 4.118 25 C -0.157 4.157 26 C 0.061 3.939 27 O -0.433 6.433 28 H 0.289 0.711 29 H 0.128 0.872 30 H 0.185 0.815 31 H 0.400 0.600 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 -18.433 -8.474 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.218 4.218 3 Si 0.934 3.066 4 H -0.193 1.193 5 H -0.181 1.181 6 H -0.182 1.182 7 C -0.496 4.496 8 H 0.099 0.901 9 C 0.077 3.923 10 C -0.204 4.204 11 C -0.302 4.302 12 S 0.284 5.716 13 C -0.592 4.592 14 C 0.385 3.615 15 O -0.491 6.491 16 N -0.389 5.389 17 C 0.009 3.991 18 C -0.151 4.151 19 C -0.006 4.006 20 O -0.302 6.302 21 C 0.152 3.848 22 H 0.081 0.919 23 C -0.177 4.177 24 C -0.155 4.155 25 C -0.195 4.195 26 C -0.014 4.014 27 O -0.355 6.355 28 H 0.102 0.898 29 H 0.146 0.854 30 H 0.202 0.798 31 H 0.235 0.765 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.845 -17.849 -8.522 22.557 hybrid contribution -0.034 -0.361 -0.064 0.368 sum 10.811 -18.210 -8.586 22.851 Atomic orbital electron populations 1.70531 1.08554 1.33651 1.27665 1.28766 0.95779 1.07547 0.89678 0.82989 0.74911 0.69516 0.79166 1.19345 1.18092 1.18229 1.20942 1.02311 0.93517 1.32815 0.90108 1.18371 0.90587 0.92725 0.90609 1.21431 0.99776 0.98179 1.00989 1.25486 1.04470 0.95591 1.04667 1.82379 1.32110 1.10205 1.46879 1.22947 1.17368 0.96074 1.22858 1.17031 0.82212 0.82003 0.80218 1.90620 1.54025 1.47770 1.56678 1.45609 1.38057 1.06791 1.48480 1.21001 0.90087 0.95261 0.92716 1.21505 0.99758 0.93114 1.00683 1.22305 0.98327 0.80780 0.99154 1.87953 1.51412 1.23098 1.67688 1.23200 0.77414 0.95527 0.88675 0.91943 1.22054 1.01235 0.92922 1.01474 1.21625 0.92779 1.02927 0.98165 1.22241 0.98911 0.96176 1.02147 1.22772 0.88433 0.95322 0.94908 1.87794 1.15712 1.85355 1.46663 0.89770 0.85401 0.79816 0.76482 0.92687 0.92965 0.90320 0.89712 0.91780 0.92638 0.91280 0.89341 0.89239 0.90493 0.91545 0.88302 0.87750 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.30 12.50 21.89 0.27 -40.02 16 2 C 0.00 0.12 5.19 85.37 0.44 0.56 16 3 Si 1.12 43.79 29.99 68.60 2.06 45.85 16 4 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.47 -26.47 8.42 23.33 0.20 -26.28 16 8 H 0.08 4.97 6.16 -2.91 -0.02 4.95 16 9 C 0.09 4.80 5.37 -20.89 -0.11 4.69 16 10 C -0.17 -8.08 8.24 22.61 0.19 -7.89 16 11 C -0.17 -6.70 11.07 66.64 0.74 -5.96 16 12 S 0.03 1.12 22.25 -56.49 -1.26 -0.14 16 13 C -0.47 -24.44 6.51 24.66 0.16 -24.28 16 14 C 0.59 30.22 7.76 86.32 0.67 30.89 16 15 O -0.60 -35.42 14.46 -4.52 -0.07 -35.48 16 16 N -0.74 -29.30 5.55 -467.48 -2.59 -31.90 16 17 C 0.13 4.43 5.67 86.38 0.49 4.92 16 18 C -0.11 -2.86 5.70 30.60 0.17 -2.69 16 19 C 0.07 1.69 5.81 71.98 0.42 2.10 16 20 O -0.38 -9.37 10.25 -126.21 -1.29 -10.67 16 21 C 0.25 4.90 3.16 72.01 0.23 5.13 16 22 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 23 C -0.14 -2.08 5.79 30.69 0.18 -1.91 16 24 C -0.12 -1.14 6.03 30.72 0.19 -0.95 16 25 C -0.16 -1.56 6.14 30.69 0.19 -1.37 16 26 C 0.06 0.83 6.84 72.01 0.49 1.32 16 27 O -0.43 -9.44 10.25 -126.21 -1.29 -10.74 16 28 H 0.29 15.30 6.48 -92.70 -0.60 14.70 16 29 H 0.13 6.00 6.94 -2.91 -0.02 5.98 16 30 H 0.18 5.68 8.06 -2.91 -0.02 5.66 16 31 H 0.40 14.09 7.55 -92.71 -0.70 13.39 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.38 7.89 -2.39 -0.02 1.36 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.09 381.27 0.93 -69.16 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.47 Total: 35.65 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 4.64 Total: -21.72 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -2.32 Total: -71.92 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -2.65 Total: -56.89 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.06 Total: 45.85 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -1.26 Total: -0.14 kcal Total: -70.09 0.93 -69.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867925174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.030 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds