Wall clock time and date at job start Sat Apr 11 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86796 * 120.00235 * 2 1 4 4 H 1.48503 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47055 * 299.99724 * 3 2 1 6 6 H 1.48505 * 109.47241 * 59.99688 * 3 2 1 7 7 C 1.38655 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99878 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99835 * 185.05845 * 9 7 2 11 11 C 1.38878 * 120.06984 * 354.46212 * 10 9 7 12 12 C 1.38102 * 119.93360 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06275 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.92770 * 180.02562 * 13 12 11 15 15 N 1.46895 * 109.47250 * 89.99438 * 14 13 12 16 16 C 1.46901 * 111.00055 * 179.97438 * 15 14 13 17 17 H 1.09003 * 108.70223 * 35.00542 * 16 15 14 18 18 C 1.44345 * 108.74083 * 153.23588 * 16 15 14 19 19 C 1.53982 * 113.19336 * 186.53441 * 18 16 15 20 20 C 1.50783 * 108.42091 * 273.73861 * 19 18 16 21 21 S 1.82249 * 111.27795 * 96.36284 * 20 19 18 22 22 O 1.42109 * 108.16697 * 73.97325 * 21 20 19 23 23 O 1.42103 * 108.16834 * 203.86763 * 21 20 19 24 24 C 1.82255 * 104.44688 * 318.92167 * 21 20 19 25 25 C 1.50903 * 111.18079 * 318.91218 * 24 21 20 26 26 C 1.38299 * 120.13958 * 0.29174 * 13 12 11 27 27 C 1.38093 * 120.06953 * 359.45600 * 26 13 12 28 28 H 0.97004 * 119.99525 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.03611 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96808 * 180.02562 * 12 11 10 31 31 H 1.08992 * 109.47377 * 209.99870 * 14 13 12 32 32 H 1.09001 * 109.47298 * 329.99829 * 14 13 12 33 33 H 1.00894 * 111.00573 * 303.96026 * 15 14 13 34 34 H 1.08998 * 108.73906 * 307.49722 * 18 16 15 35 35 H 1.09006 * 108.73800 * 65.70190 * 18 16 15 36 36 H 1.09007 * 109.67069 * 33.46809 * 19 18 16 37 37 H 1.09000 * 109.67674 * 153.96659 * 19 18 16 38 38 H 1.09000 * 109.11315 * 216.82643 * 20 19 18 39 39 H 1.08998 * 109.11733 * 335.96059 * 20 19 18 40 40 H 1.08998 * 109.11695 * 79.38337 * 24 21 20 41 41 H 1.09007 * 109.11662 * 198.51634 * 24 21 20 42 42 H 1.08998 * 109.75843 * 336.78065 * 25 24 21 43 43 H 1.09006 * 109.59496 * 216.10791 * 25 24 21 44 44 H 1.08005 * 119.96050 * 179.70549 * 26 13 12 45 45 H 1.08005 * 120.03360 * 180.26705 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8909 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4570 -3.4395 0.0953 12 6 4.2022 -4.5972 0.2040 13 6 3.5683 -5.8204 0.3257 14 6 4.3844 -7.0816 0.4447 15 7 4.6558 -7.3574 1.8617 16 6 5.4508 -8.5830 2.0167 17 1 6.1463 -8.6565 1.1806 18 6 6.2074 -8.4931 3.2427 19 6 7.2004 -9.6551 3.4291 20 6 6.4731 -10.8032 4.0821 21 16 5.8948 -12.0095 2.8443 22 8 7.0206 -12.7418 2.3797 23 8 4.7965 -12.7208 3.3983 24 6 5.2745 -10.9875 1.4687 25 6 4.5026 -9.7958 1.9797 26 6 2.1870 -5.8890 0.3329 27 6 1.4363 -4.7345 0.2298 28 1 -0.4849 0.8401 -0.0004 29 1 3.9526 -2.4846 0.0007 30 1 5.2810 -4.5472 0.1948 31 1 3.8308 -7.9148 0.0119 32 1 5.3271 -6.9561 -0.0880 33 1 5.1115 -6.5723 2.3021 34 1 6.7620 -7.5548 3.2439 35 1 5.5132 -8.4898 4.0832 36 1 7.5847 -9.9686 2.4584 37 1 8.0259 -9.3340 4.0644 38 1 7.1464 -11.3019 4.7793 39 1 5.6142 -10.4162 4.6304 40 1 6.1188 -10.6389 0.8740 41 1 4.6213 -11.5931 0.8404 42 1 4.1305 -10.0007 2.9835 43 1 3.6671 -9.5874 1.3114 44 1 1.6950 -6.8462 0.4233 45 1 0.3577 -4.7883 0.2398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873044793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:22 Heat of formation + Delta-G solvation = -69.711033 kcal Electronic energy + Delta-G solvation = -26572.340441 eV Core-core repulsion = 22682.867878 eV Total energy + Delta-G solvation = -3889.472563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -39.58077 -38.92918 -37.35376 -36.81659 -36.40002 -34.65192 -33.03694 -32.31277 -30.56258 -30.20161 -28.24867 -25.82083 -25.26942 -24.03356 -22.47507 -21.99923 -21.02809 -20.37232 -19.07069 -18.03615 -17.47440 -17.30841 -17.01539 -16.21688 -15.83092 -15.66848 -15.07393 -14.75054 -14.58039 -14.35575 -14.06158 -13.93786 -13.63975 -13.57574 -13.32036 -13.27737 -13.02088 -12.74229 -12.56098 -12.45723 -12.34568 -12.29814 -12.05315 -11.80982 -11.64864 -11.40055 -11.31103 -11.16347 -10.88147 -10.75517 -10.66707 -10.62835 -10.53065 -10.45272 -9.37789 -8.88630 -8.54719 -8.22109 -7.23685 -6.49411 -4.08337 -0.43967 2.17714 2.21629 2.28256 3.08448 3.10130 3.15693 3.23803 3.46626 3.86316 3.92693 4.05853 4.12688 4.22054 4.32684 4.44243 4.58203 4.76177 4.79593 4.99010 5.03533 5.06120 5.11596 5.20416 5.24159 5.28552 5.34397 5.39433 5.52706 5.53853 5.65075 5.70091 5.78601 5.83779 5.85823 6.16894 6.37837 6.65711 6.83130 6.90719 7.00997 7.21226 7.25479 7.36720 7.40460 7.78199 7.95565 8.96241 9.66262 10.68577 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.001860 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.949488 B =15051.848660 C =15478.882387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.065 4.065 13 C -0.188 4.188 14 C 0.117 3.883 15 N -0.682 5.682 16 C 0.080 3.920 17 H 0.047 0.953 18 C -0.137 4.137 19 C -0.098 4.098 20 C -0.601 4.601 21 S 2.399 3.601 22 O -0.946 6.946 23 O -0.942 6.942 24 C -0.598 4.598 25 C -0.094 4.094 26 C -0.052 4.052 27 C -0.194 4.194 28 H 0.270 0.730 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.346 0.654 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.370 -18.653 5.622 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.084 4.084 13 C -0.189 4.189 14 C -0.011 4.011 15 N -0.314 5.314 16 C -0.030 4.030 17 H 0.065 0.935 18 C -0.175 4.175 19 C -0.137 4.137 20 C -0.730 4.730 21 S 2.581 3.419 22 O -0.943 6.943 23 O -0.939 6.939 24 C -0.728 4.728 25 C -0.133 4.133 26 C -0.070 4.070 27 C -0.214 4.214 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.165 0.835 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.353 -19.648 5.754 24.443 hybrid contribution 1.328 1.957 -0.346 2.390 sum 14.681 -17.691 5.407 23.617 Atomic orbital electron populations 1.70051 1.05959 1.27606 1.45991 1.25304 0.95857 0.98871 0.96547 0.85643 0.79086 0.80363 0.78289 1.19140 1.20128 1.20111 1.21368 0.91796 0.80809 1.52832 0.89032 1.83982 1.34411 1.11499 1.78158 1.19411 0.90288 0.88073 0.92006 1.21118 0.93833 0.98815 1.11660 1.20576 0.97949 0.91963 0.97931 1.19082 0.93678 0.93363 1.12763 1.20691 0.97137 0.95754 0.87489 1.60642 1.50203 1.04928 1.15621 1.20257 0.93280 0.91875 0.97603 0.93494 1.20600 0.98287 0.99191 0.99384 1.21014 0.98387 0.93340 1.00921 1.30112 1.11706 1.14361 1.16814 1.08900 0.75910 0.78161 0.78887 1.93580 1.52068 1.68012 1.80616 1.93591 1.53746 1.68850 1.77724 1.30101 1.11694 1.12518 1.18504 1.21166 0.98705 0.90805 1.02589 1.20455 0.92826 0.96653 0.97098 1.20234 0.99620 0.90362 1.11152 0.92026 0.85660 0.87998 0.91014 0.95322 0.83483 0.90599 0.89900 0.90881 0.89200 0.84731 0.84331 0.84769 0.84476 0.90459 0.88559 0.87077 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 3 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -10.75 9.49 30.89 0.29 -10.46 16 8 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 9 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.23 -4.89 9.17 -39.39 -0.36 -5.25 16 12 C -0.07 -1.11 9.69 -39.61 -0.38 -1.49 16 13 C -0.19 -2.91 5.40 -104.57 -0.56 -3.47 16 14 C 0.12 1.34 5.53 -4.98 -0.03 1.31 16 15 N -0.68 -6.67 6.23 -111.77 -0.70 -7.37 16 16 C 0.08 0.55 1.94 -71.22 -0.14 0.41 16 17 H 0.05 0.30 6.82 -51.93 -0.35 -0.06 16 18 C -0.14 -0.73 4.43 -30.24 -0.13 -0.87 16 19 C -0.10 -0.41 5.60 -27.33 -0.15 -0.56 16 20 C -0.60 -2.67 5.65 36.05 0.20 -2.47 16 21 S 2.40 17.02 4.98 -107.50 -0.53 16.49 16 22 O -0.95 -9.97 18.08 -57.89 -1.05 -11.02 16 23 O -0.94 -10.34 18.08 -57.89 -1.05 -11.39 16 24 C -0.60 -3.24 5.66 36.10 0.20 -3.04 16 25 C -0.09 -0.62 5.17 -27.27 -0.14 -0.76 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 C -0.19 -3.98 9.99 -39.40 -0.39 -4.38 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 30 H 0.10 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.07 0.77 7.17 -51.93 -0.37 0.40 16 32 H 0.03 0.31 7.98 -51.93 -0.41 -0.11 16 33 H 0.35 3.38 8.04 -39.30 -0.32 3.07 16 34 H 0.08 0.39 7.78 -51.93 -0.40 -0.01 16 35 H 0.08 0.45 7.20 -51.93 -0.37 0.07 16 36 H 0.07 0.25 6.93 -51.93 -0.36 -0.11 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.14 0.49 6.77 -51.93 -0.35 0.13 16 40 H 0.13 0.53 6.79 -51.93 -0.35 0.18 16 41 H 0.14 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.08 0.46 6.90 -51.93 -0.36 0.10 16 43 H 0.10 0.73 7.07 -51.93 -0.37 0.36 16 44 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 45 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -35.48 368.41 -10.64 -46.12 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.26 Total: 3.59 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -2.34 Total: -27.92 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.06 Total: -31.56 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -2.09 Total: -27.39 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 17.02 SS G_CDS: -0.53 Total: 16.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.48 -10.64 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873044793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.596 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds