Wall clock time and date at job start Sat Apr 11 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86796 * 120.00235 * 2 1 4 4 H 1.48503 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47055 * 299.99724 * 3 2 1 6 6 H 1.48505 * 109.47241 * 59.99688 * 3 2 1 7 7 C 1.38655 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99878 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99835 * 185.05845 * 9 7 2 11 11 C 1.38878 * 120.06984 * 354.46212 * 10 9 7 12 12 C 1.38102 * 119.93360 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06275 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.92770 * 180.02562 * 13 12 11 15 15 N 1.46895 * 109.47250 * 89.99438 * 14 13 12 16 16 C 1.46901 * 111.00055 * 179.97438 * 15 14 13 17 17 H 1.09003 * 108.70223 * 35.00542 * 16 15 14 18 18 C 1.44345 * 108.74083 * 153.23588 * 16 15 14 19 19 C 1.53982 * 113.19336 * 186.53441 * 18 16 15 20 20 C 1.50783 * 108.42091 * 273.73861 * 19 18 16 21 21 S 1.82249 * 111.27795 * 96.36284 * 20 19 18 22 22 O 1.42109 * 108.16697 * 73.97325 * 21 20 19 23 23 O 1.42103 * 108.16834 * 203.86763 * 21 20 19 24 24 C 1.82255 * 104.44688 * 318.92167 * 21 20 19 25 25 C 1.50903 * 111.18079 * 318.91218 * 24 21 20 26 26 C 1.38299 * 120.13958 * 0.29174 * 13 12 11 27 27 C 1.38093 * 120.06953 * 359.45600 * 26 13 12 28 28 H 0.97004 * 119.99525 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.03611 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96808 * 180.02562 * 12 11 10 31 31 H 1.08992 * 109.47377 * 209.99870 * 14 13 12 32 32 H 1.09001 * 109.47298 * 329.99829 * 14 13 12 33 33 H 1.00894 * 111.00573 * 303.96026 * 15 14 13 34 34 H 1.08998 * 108.73906 * 307.49722 * 18 16 15 35 35 H 1.09006 * 108.73800 * 65.70190 * 18 16 15 36 36 H 1.09007 * 109.67069 * 33.46809 * 19 18 16 37 37 H 1.09000 * 109.67674 * 153.96659 * 19 18 16 38 38 H 1.09000 * 109.11315 * 216.82643 * 20 19 18 39 39 H 1.08998 * 109.11733 * 335.96059 * 20 19 18 40 40 H 1.08998 * 109.11695 * 79.38337 * 24 21 20 41 41 H 1.09007 * 109.11662 * 198.51634 * 24 21 20 42 42 H 1.08998 * 109.75843 * 336.78065 * 25 24 21 43 43 H 1.09006 * 109.59496 * 216.10791 * 25 24 21 44 44 H 1.08005 * 119.96050 * 179.70549 * 26 13 12 45 45 H 1.08005 * 120.03360 * 180.26705 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8909 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4570 -3.4395 0.0953 12 6 4.2022 -4.5972 0.2040 13 6 3.5683 -5.8204 0.3257 14 6 4.3844 -7.0816 0.4447 15 7 4.6558 -7.3574 1.8617 16 6 5.4508 -8.5830 2.0167 17 1 6.1463 -8.6565 1.1806 18 6 6.2074 -8.4931 3.2427 19 6 7.2004 -9.6551 3.4291 20 6 6.4731 -10.8032 4.0821 21 16 5.8948 -12.0095 2.8443 22 8 7.0206 -12.7418 2.3797 23 8 4.7965 -12.7208 3.3983 24 6 5.2745 -10.9875 1.4687 25 6 4.5026 -9.7958 1.9797 26 6 2.1870 -5.8890 0.3329 27 6 1.4363 -4.7345 0.2298 28 1 -0.4849 0.8401 -0.0004 29 1 3.9526 -2.4846 0.0007 30 1 5.2810 -4.5472 0.1948 31 1 3.8308 -7.9148 0.0119 32 1 5.3271 -6.9561 -0.0880 33 1 5.1115 -6.5723 2.3021 34 1 6.7620 -7.5548 3.2439 35 1 5.5132 -8.4898 4.0832 36 1 7.5847 -9.9686 2.4584 37 1 8.0259 -9.3340 4.0644 38 1 7.1464 -11.3019 4.7793 39 1 5.6142 -10.4162 4.6304 40 1 6.1188 -10.6389 0.8740 41 1 4.6213 -11.5931 0.8404 42 1 4.1305 -10.0007 2.9835 43 1 3.6671 -9.5874 1.3114 44 1 1.6950 -6.8462 0.4233 45 1 0.3577 -4.7883 0.2398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873044793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:21 Heat of formation + Delta-G solvation = -96.763083 kcal Electronic energy + Delta-G solvation = -26573.513506 eV Core-core repulsion = 22682.867878 eV Total energy + Delta-G solvation = -3890.645628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80843 -39.92174 -38.33797 -38.01728 -37.06537 -35.44397 -34.26487 -33.51343 -31.76797 -31.53092 -29.17877 -27.44241 -26.09989 -25.01183 -23.57480 -23.02514 -21.85428 -21.40742 -19.82419 -19.61067 -18.84172 -17.95955 -17.83530 -16.82385 -16.72384 -16.40498 -16.31694 -16.20251 -15.67358 -15.50555 -15.34057 -15.06562 -14.67600 -14.44776 -14.34611 -14.07080 -13.86561 -13.74599 -13.59059 -13.42379 -13.22886 -13.10525 -13.03466 -12.95488 -12.60474 -12.46915 -12.28356 -12.17766 -12.09772 -11.98305 -11.81193 -11.48343 -11.29728 -11.14565 -11.03464 -10.79038 -9.74277 -9.27915 -8.87088 -8.46527 -6.14505 -0.94426 0.64022 0.71190 1.35248 1.43610 1.53541 1.80992 2.17934 2.73625 2.78998 2.97178 3.13708 3.40365 3.55536 3.66578 3.72451 3.83258 3.89878 4.03593 4.09581 4.15309 4.25864 4.32648 4.42411 4.51314 4.59156 4.64591 4.66182 4.67819 4.83290 4.84560 4.88416 5.02107 5.13169 5.13457 5.17505 5.18451 5.32606 5.35307 5.36908 5.61703 5.74577 5.85043 6.04553 6.17155 6.29670 6.56756 6.98489 7.80751 8.77094 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.001860 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.949488 B =15051.848660 C =15478.882387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.019 2.981 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.411 4.411 8 H 0.102 0.898 9 O -0.235 6.235 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.061 4.061 13 C -0.156 4.156 14 C 0.120 3.880 15 N -0.691 5.691 16 C 0.081 3.919 17 H 0.062 0.938 18 C -0.139 4.139 19 C -0.100 4.100 20 C -0.584 4.584 21 S 2.395 3.605 22 O -0.987 6.987 23 O -0.991 6.991 24 C -0.584 4.584 25 C -0.100 4.100 26 C -0.048 4.048 27 C -0.209 4.209 28 H 0.272 0.728 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.347 0.653 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.144 0.856 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.744 -19.920 6.035 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.487 4.487 8 H 0.119 0.881 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.263 4.263 12 C -0.080 4.080 13 C -0.157 4.157 14 C -0.008 4.008 15 N -0.324 5.324 16 C -0.028 4.028 17 H 0.080 0.920 18 C -0.176 4.176 19 C -0.139 4.139 20 C -0.716 4.716 21 S 2.583 3.417 22 O -0.985 6.985 23 O -0.988 6.988 24 C -0.716 4.716 25 C -0.139 4.139 26 C -0.066 4.066 27 C -0.228 4.228 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.167 0.833 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.173 0.827 41 H 0.164 0.836 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.161 0.839 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.764 -21.016 6.168 27.581 hybrid contribution 0.418 2.002 -0.430 2.089 sum 17.181 -19.014 5.738 26.261 Atomic orbital electron populations 1.70199 1.08053 1.28669 1.49130 1.26609 0.96868 1.02814 0.96017 0.84517 0.78270 0.74832 0.78499 1.17345 1.19444 1.19425 1.21850 0.92482 0.81437 1.52919 0.88058 1.83944 1.36088 1.12671 1.81528 1.19972 0.91765 0.87880 0.94243 1.21234 0.92966 1.00136 1.11984 1.20964 0.99699 0.90931 0.96383 1.19660 0.93510 0.94898 1.07633 1.20700 0.97411 0.93603 0.89121 1.60548 1.51626 1.06055 1.14173 1.20351 0.93226 0.90249 0.98975 0.92022 1.20598 0.98441 0.99996 0.98582 1.21107 0.98428 0.92462 1.01869 1.29962 1.12570 1.13394 1.15665 1.08761 0.74582 0.78823 0.79520 1.93525 1.53036 1.70318 1.81583 1.93528 1.55142 1.71347 1.78810 1.29941 1.12448 1.11655 1.17553 1.21235 0.98693 0.91087 1.02912 1.20854 0.93646 0.96531 0.95605 1.20478 0.99836 0.90822 1.11646 0.91909 0.86619 0.84205 0.89607 0.93381 0.83328 0.89941 0.89982 0.89814 0.87602 0.83265 0.83067 0.82694 0.83648 0.90030 0.89060 0.83861 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.58 13.67 21.61 0.30 -56.29 16 2 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 3 Si 1.02 42.42 29.55 68.60 2.03 44.45 16 4 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.41 -23.73 9.49 67.92 0.64 -23.09 16 8 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 9 O -0.24 -14.13 9.76 -22.74 -0.22 -14.35 16 10 C 0.11 5.46 6.65 22.58 0.15 5.61 16 11 C -0.24 -10.15 9.17 22.39 0.21 -9.95 16 12 C -0.06 -1.89 9.69 22.25 0.22 -1.68 16 13 C -0.16 -4.25 5.40 -19.83 -0.11 -4.36 16 14 C 0.12 2.11 5.53 85.56 0.47 2.58 16 15 N -0.69 -10.25 6.23 -507.52 -3.16 -13.41 16 16 C 0.08 0.73 1.94 42.64 0.08 0.82 16 17 H 0.06 0.42 6.82 -2.39 -0.02 0.41 16 18 C -0.14 -0.87 4.43 28.32 0.13 -0.74 16 19 C -0.10 -0.41 5.60 30.21 0.17 -0.24 16 20 C -0.58 -3.35 5.65 71.26 0.40 -2.95 16 21 S 2.39 30.07 4.98 -56.49 -0.28 29.79 16 22 O -0.99 -19.83 18.08 -127.31 -2.30 -22.13 16 23 O -0.99 -21.36 18.08 -127.31 -2.30 -23.67 16 24 C -0.58 -4.46 5.66 71.30 0.40 -4.06 16 25 C -0.10 -0.95 5.17 30.25 0.16 -0.80 16 26 C -0.05 -1.51 9.69 22.25 0.22 -1.30 16 27 C -0.21 -8.70 9.99 22.39 0.22 -8.48 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 29 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 30 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.09 1.36 7.17 -2.39 -0.02 1.34 16 32 H 0.05 0.72 7.98 -2.39 -0.02 0.70 16 33 H 0.35 5.15 8.04 -89.70 -0.72 4.43 16 34 H 0.08 0.46 7.78 -2.39 -0.02 0.44 16 35 H 0.08 0.56 7.20 -2.38 -0.02 0.54 16 36 H 0.08 0.21 6.93 -2.38 -0.02 0.19 16 37 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.15 0.56 6.77 -2.39 -0.02 0.54 16 40 H 0.16 0.56 6.79 -2.39 -0.02 0.54 16 41 H 0.15 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.08 0.71 6.90 -2.39 -0.02 0.70 16 43 H 0.09 1.02 7.07 -2.38 -0.02 1.00 16 44 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 45 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -83.85 368.41 -1.82 -85.67 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.30 Total: 19.55 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 3.83 Total: -49.61 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -2.87 Total: -69.70 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -4.83 Total: -60.15 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 30.07 SS G_CDS: -0.28 Total: 29.79 kcal Total: -83.85 -1.82 -85.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873044793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.089 kcal (2) G-P(sol) polarization free energy of solvation -83.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds