Wall clock time and date at job start Sat Apr 11 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.33718 * 2 1 4 4 N 1.46500 * 109.46764 * 304.99689 * 3 2 1 5 5 S 1.65608 * 119.99645 * 165.00200 * 4 3 2 6 6 O 1.42102 * 104.27540 * 308.92809 * 5 4 3 7 7 O 1.42095 * 104.27707 * 181.07170 * 5 4 3 8 8 C 1.81396 * 104.44869 * 64.99969 * 5 4 3 9 9 C 1.53004 * 109.47142 * 180.02562 * 8 5 4 10 10 C 1.50701 * 109.47211 * 180.02562 * 9 8 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 8 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 O 1.42723 * 109.33917 * 240.32374 * 2 1 3 19 19 C 1.43164 * 113.17220 * 291.85130 * 18 2 1 20 20 C 1.52966 * 108.33577 * 289.09905 * 19 18 2 21 21 C 1.50749 * 109.76470 * 49.26997 * 20 19 18 22 22 C 1.38586 * 118.76594 * 163.21251 * 21 20 19 23 23 C 1.38070 * 120.27634 * 179.52386 * 22 21 20 24 24 C 1.38262 * 119.86003 * 0.02562 * 23 22 21 25 25 C 1.38050 * 119.89946 * 0.09198 * 24 23 22 26 26 C 1.37907 * 121.34470 * 342.91496 * 21 20 19 27 27 H 1.09000 * 109.46658 * 59.99805 * 1 2 3 28 28 H 1.08996 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47218 * 300.00416 * 1 2 3 30 30 H 1.08998 * 109.46746 * 184.99882 * 3 2 1 31 31 H 1.09000 * 109.46916 * 64.99988 * 3 2 1 32 32 H 0.96992 * 120.00581 * 344.99962 * 4 3 2 33 33 H 1.09000 * 109.47615 * 59.99959 * 8 5 4 34 34 H 1.09007 * 109.47380 * 299.99639 * 8 5 4 35 35 H 1.09000 * 109.47211 * 59.99329 * 9 8 5 36 36 H 1.09007 * 109.46376 * 299.99872 * 9 8 5 37 37 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 38 38 H 1.08993 * 109.66956 * 169.46551 * 19 18 2 39 39 H 1.09002 * 109.73763 * 48.77392 * 19 18 2 40 40 H 1.09000 * 109.42487 * 289.17500 * 20 19 18 41 41 H 1.08997 * 109.42327 * 169.35436 * 20 19 18 42 42 H 1.07996 * 119.86725 * 359.52525 * 22 21 20 43 43 H 1.08002 * 120.07030 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.04955 * 180.11264 * 24 23 22 45 45 H 1.08001 * 119.85137 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0367 1.4437 0.0000 4 7 1.4508 2.1667 -1.1315 5 16 1.5153 3.8208 -1.1799 6 8 1.0114 4.2283 0.0848 7 8 0.8397 4.1628 -2.3823 8 6 3.2839 4.2012 -1.3130 9 6 3.4767 5.7181 -1.3660 10 6 4.9460 6.0342 -1.4773 11 1 5.6699 5.2332 -1.5068 12 6 5.3665 7.3459 -1.5352 13 7 4.4850 8.3213 -1.4989 14 14 7.1883 7.7378 -1.6652 15 1 7.5782 7.8098 -3.0963 16 1 7.4618 9.0429 -1.0115 17 1 7.9732 6.6725 -0.9914 18 8 2.0027 -0.6667 -1.1701 19 6 1.7270 -2.0716 -1.1680 20 6 2.6257 -2.7368 -0.1241 21 6 2.5355 -1.9852 1.1795 22 6 2.9796 -2.6032 2.3377 23 6 2.9205 -1.9399 3.5472 24 6 2.4157 -0.6539 3.6031 25 6 1.9709 -0.0385 2.4502 26 6 2.0289 -0.7038 1.2352 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.1230 1.4475 -0.0895 31 1 1.7472 1.9303 0.9314 32 1 1.0253 1.6767 -1.8523 33 1 3.6849 3.7517 -2.2214 34 1 3.8084 3.7988 -0.4463 35 1 3.0758 6.1674 -0.4574 36 1 2.9521 6.1209 -2.2325 37 1 4.7809 9.2441 -1.5393 38 1 1.9387 -2.4884 -2.1526 39 1 0.6810 -2.2411 -0.9124 40 1 3.6572 -2.7294 -0.4762 41 1 2.3032 -3.7668 0.0283 42 1 3.3735 -3.6078 2.2942 43 1 3.2679 -2.4245 4.4477 44 1 2.3698 -0.1315 4.5473 45 1 1.5764 0.9659 2.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882735007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:39 Heat of formation + Delta-G solvation = -102.277126 kcal Electronic energy + Delta-G solvation = -27735.229777 eV Core-core repulsion = 23844.345042 eV Total energy + Delta-G solvation = -3890.884735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02253 -38.06994 -36.58584 -35.83211 -35.37921 -33.86081 -33.05907 -32.33659 -31.12970 -29.99935 -28.71145 -26.33855 -25.56373 -24.13207 -23.48394 -21.63106 -21.44931 -19.75895 -18.96495 -17.74303 -17.32894 -16.87554 -16.27422 -16.00235 -15.86693 -15.45671 -15.31774 -14.89521 -14.65863 -14.51819 -14.23799 -13.97383 -13.67078 -13.44944 -13.32985 -13.03850 -12.61210 -12.47168 -12.28802 -12.12446 -12.11211 -11.91988 -11.70947 -11.59266 -11.55317 -11.47817 -11.06027 -10.98116 -10.93274 -10.68127 -10.39719 -10.34965 -9.89747 -9.76134 -9.45925 -9.07857 -8.97632 -8.87691 -8.47892 -6.10080 -4.15377 0.82102 1.03930 1.09695 3.13818 3.28027 3.34133 3.36169 3.37108 3.51360 4.22036 4.26697 4.31555 4.39924 4.46340 4.53272 4.67634 4.80260 4.80477 4.84654 4.87231 5.11784 5.13186 5.21426 5.25159 5.32421 5.36848 5.44145 5.51350 5.56216 5.62139 5.70102 5.72387 5.73186 5.78686 5.93580 5.98594 6.16533 6.25642 6.28794 6.53209 6.70142 6.88454 7.16295 7.33146 7.39460 7.83276 8.20509 8.88121 9.49271 11.00994 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.002974 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.049158 B = 9412.576132 C =10181.471253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.153 3.847 3 C 0.133 3.867 4 N -1.122 6.122 5 S 2.593 3.407 6 O -0.968 6.968 7 O -0.966 6.966 8 C -0.590 4.590 9 C 0.028 3.972 10 C -0.519 4.519 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.891 5.891 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 O -0.359 6.359 19 C 0.055 3.945 20 C -0.116 4.116 21 C -0.070 4.070 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.108 4.108 26 C -0.105 4.105 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.416 0.584 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 -25.614 6.769 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.112 3.888 3 C 0.006 3.994 4 N -0.880 5.880 5 S 2.691 3.309 6 O -0.958 6.958 7 O -0.957 6.957 8 C -0.724 4.724 9 C -0.011 4.011 10 C -0.559 4.559 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 O -0.278 6.278 19 C -0.022 4.022 20 C -0.153 4.153 21 C -0.070 4.070 22 C -0.139 4.139 23 C -0.134 4.134 24 C -0.138 4.138 25 C -0.126 4.126 26 C -0.106 4.106 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.251 0.749 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.564 -24.661 6.811 26.413 hybrid contribution 1.466 -0.420 -0.093 1.528 sum -5.097 -25.081 6.718 26.461 Atomic orbital electron populations 1.22384 0.93931 1.02554 1.04048 1.20338 0.93803 0.91419 0.83202 1.21356 0.98528 0.89333 0.90140 1.55715 1.74075 1.26694 1.31532 1.05520 0.79136 0.72075 0.74179 1.93531 1.78400 1.80426 1.43438 1.93553 1.72824 1.81471 1.47832 1.30449 1.20915 1.10752 1.10240 1.18966 0.99854 0.83443 0.98860 1.21014 0.91032 0.92176 1.51667 0.92035 1.25064 0.98151 0.96317 0.94961 1.69954 1.33738 0.99603 1.49610 0.86474 0.84699 0.77835 0.78298 1.20472 1.21027 1.19766 1.88144 1.80332 1.19996 1.39283 1.22669 0.98307 0.81584 0.99617 1.21150 1.02187 0.99129 0.92858 1.19477 0.98518 0.93791 0.95203 1.21043 1.00633 1.00047 0.92156 1.21146 0.99374 0.95123 0.97725 1.21143 0.98958 0.95257 0.98423 1.21222 0.99361 1.00179 0.91825 1.19961 1.00795 0.94633 0.95230 0.90691 0.92007 0.90710 0.90618 0.88690 0.74930 0.85971 0.86361 0.94821 0.94838 0.92556 0.88128 0.92251 0.89516 0.89832 0.86046 0.85962 0.85643 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 8.16 37.16 0.30 -1.36 16 2 C 0.15 1.64 0.64 -91.79 -0.06 1.58 16 3 C 0.13 1.62 4.99 -4.04 -0.02 1.60 16 4 N -1.12 -15.13 5.28 -10.61 -0.06 -15.19 16 5 S 2.59 46.57 5.46 -107.50 -0.59 45.98 16 6 O -0.97 -19.72 17.50 -57.54 -1.01 -20.73 16 7 O -0.97 -20.24 18.08 -57.54 -1.04 -21.28 16 8 C -0.59 -11.46 6.01 37.16 0.22 -11.23 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 14 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 O -0.36 -3.90 9.96 -35.23 -0.35 -4.25 16 19 C 0.05 0.43 6.73 37.14 0.25 0.68 16 20 C -0.12 -0.86 6.00 -27.88 -0.17 -1.03 16 21 C -0.07 -0.65 5.78 -104.59 -0.60 -1.26 16 22 C -0.12 -1.01 9.67 -39.51 -0.38 -1.39 16 23 C -0.12 -0.95 10.05 -39.63 -0.40 -1.35 16 24 C -0.12 -1.06 10.05 -39.64 -0.40 -1.46 16 25 C -0.11 -1.08 8.94 -39.50 -0.35 -1.43 16 26 C -0.11 -1.09 4.75 -104.61 -0.50 -1.59 16 27 H 0.07 0.73 6.88 -51.93 -0.36 0.37 16 28 H 0.06 0.52 6.48 -51.93 -0.34 0.18 16 29 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.12 5.86 -51.93 -0.30 0.81 16 32 H 0.42 5.02 7.52 -34.47 -0.26 4.76 16 33 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 34 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.42 6.21 -51.93 -0.32 0.10 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.22 6.45 -52.49 -0.34 0.88 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -35.67 374.56 -10.86 -46.54 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.53 Total: 3.78 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: -2.65 Total: -30.92 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.68 Total: -41.11 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -2.40 Total: -46.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 46.57 SS G_CDS: -0.59 Total: 45.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.67 -10.86 -46.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882735007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.741 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds