Wall clock time and date at job start Sat Apr 11 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.33718 * 2 1 4 4 N 1.46500 * 109.46764 * 304.99689 * 3 2 1 5 5 S 1.65608 * 119.99645 * 165.00200 * 4 3 2 6 6 O 1.42102 * 104.27540 * 308.92809 * 5 4 3 7 7 O 1.42095 * 104.27707 * 181.07170 * 5 4 3 8 8 C 1.81396 * 104.44869 * 64.99969 * 5 4 3 9 9 C 1.53004 * 109.47142 * 180.02562 * 8 5 4 10 10 C 1.50701 * 109.47211 * 180.02562 * 9 8 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 8 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 O 1.42723 * 109.33917 * 240.32374 * 2 1 3 19 19 C 1.43164 * 113.17220 * 291.85130 * 18 2 1 20 20 C 1.52966 * 108.33577 * 289.09905 * 19 18 2 21 21 C 1.50749 * 109.76470 * 49.26997 * 20 19 18 22 22 C 1.38586 * 118.76594 * 163.21251 * 21 20 19 23 23 C 1.38070 * 120.27634 * 179.52386 * 22 21 20 24 24 C 1.38262 * 119.86003 * 0.02562 * 23 22 21 25 25 C 1.38050 * 119.89946 * 0.09198 * 24 23 22 26 26 C 1.37907 * 121.34470 * 342.91496 * 21 20 19 27 27 H 1.09000 * 109.46658 * 59.99805 * 1 2 3 28 28 H 1.08996 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47218 * 300.00416 * 1 2 3 30 30 H 1.08998 * 109.46746 * 184.99882 * 3 2 1 31 31 H 1.09000 * 109.46916 * 64.99988 * 3 2 1 32 32 H 0.96992 * 120.00581 * 344.99962 * 4 3 2 33 33 H 1.09000 * 109.47615 * 59.99959 * 8 5 4 34 34 H 1.09007 * 109.47380 * 299.99639 * 8 5 4 35 35 H 1.09000 * 109.47211 * 59.99329 * 9 8 5 36 36 H 1.09007 * 109.46376 * 299.99872 * 9 8 5 37 37 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 38 38 H 1.08993 * 109.66956 * 169.46551 * 19 18 2 39 39 H 1.09002 * 109.73763 * 48.77392 * 19 18 2 40 40 H 1.09000 * 109.42487 * 289.17500 * 20 19 18 41 41 H 1.08997 * 109.42327 * 169.35436 * 20 19 18 42 42 H 1.07996 * 119.86725 * 359.52525 * 22 21 20 43 43 H 1.08002 * 120.07030 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.04955 * 180.11264 * 24 23 22 45 45 H 1.08001 * 119.85137 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0367 1.4437 0.0000 4 7 1.4508 2.1667 -1.1315 5 16 1.5153 3.8208 -1.1799 6 8 1.0114 4.2283 0.0848 7 8 0.8397 4.1628 -2.3823 8 6 3.2839 4.2012 -1.3130 9 6 3.4767 5.7181 -1.3660 10 6 4.9460 6.0342 -1.4773 11 1 5.6699 5.2332 -1.5068 12 6 5.3665 7.3459 -1.5352 13 7 4.4850 8.3213 -1.4989 14 14 7.1883 7.7378 -1.6652 15 1 7.5782 7.8098 -3.0963 16 1 7.4618 9.0429 -1.0115 17 1 7.9732 6.6725 -0.9914 18 8 2.0027 -0.6667 -1.1701 19 6 1.7270 -2.0716 -1.1680 20 6 2.6257 -2.7368 -0.1241 21 6 2.5355 -1.9852 1.1795 22 6 2.9796 -2.6032 2.3377 23 6 2.9205 -1.9399 3.5472 24 6 2.4157 -0.6539 3.6031 25 6 1.9709 -0.0385 2.4502 26 6 2.0289 -0.7038 1.2352 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.1230 1.4475 -0.0895 31 1 1.7472 1.9303 0.9314 32 1 1.0253 1.6767 -1.8523 33 1 3.6849 3.7517 -2.2214 34 1 3.8084 3.7988 -0.4463 35 1 3.0758 6.1674 -0.4574 36 1 2.9521 6.1209 -2.2325 37 1 4.7809 9.2441 -1.5393 38 1 1.9387 -2.4884 -2.1526 39 1 0.6810 -2.2411 -0.9124 40 1 3.6572 -2.7294 -0.4762 41 1 2.3032 -3.7668 0.0283 42 1 3.3735 -3.6078 2.2942 43 1 3.2679 -2.4245 4.4477 44 1 2.3698 -0.1315 4.5473 45 1 1.5764 0.9659 2.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882735007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:38 Heat of formation + Delta-G solvation = -127.222278 kcal Electronic energy + Delta-G solvation = -27736.311480 eV Core-core repulsion = 23844.345042 eV Total energy + Delta-G solvation = -3891.966438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72115 -38.76695 -38.16353 -37.04980 -36.70566 -35.88943 -33.82962 -33.12622 -33.08989 -30.67496 -29.38546 -27.58651 -27.26082 -24.75083 -24.19631 -23.58102 -22.17317 -20.54703 -20.24675 -19.15891 -18.45912 -18.21772 -17.51458 -17.13623 -16.91092 -16.54630 -16.52046 -16.24527 -15.86589 -15.61392 -15.09821 -14.90030 -14.69871 -14.50911 -14.36644 -14.24986 -13.79658 -13.69354 -13.30138 -13.20615 -13.13905 -13.09169 -13.00864 -12.92995 -12.78487 -12.74043 -12.68472 -12.45513 -12.23922 -12.13579 -11.75864 -11.68009 -11.35408 -11.19001 -10.64191 -10.58252 -10.39325 -9.71605 -9.54497 -8.25597 -6.39490 -0.68145 0.36289 0.44518 1.40959 1.42819 1.53986 1.81976 2.38387 2.64962 2.78964 2.84101 3.07723 3.25246 3.51075 3.57563 3.78864 3.93801 3.95308 4.01540 4.12455 4.17376 4.27208 4.29180 4.35004 4.50620 4.54335 4.61887 4.64593 4.72546 4.76249 4.83346 4.84619 4.92696 5.03199 5.08716 5.15740 5.25290 5.27945 5.29187 5.52509 5.61412 5.63223 5.68944 6.06247 6.07447 6.09432 6.19625 6.73935 7.30550 8.86696 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.002974 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.049158 B = 9412.576132 C =10181.471253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.159 3.841 3 C 0.122 3.878 4 N -1.102 6.102 5 S 2.624 3.376 6 O -0.992 6.992 7 O -0.997 6.997 8 C -0.591 4.591 9 C 0.020 3.980 10 C -0.540 4.540 11 H 0.074 0.926 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.258 1.258 18 O -0.377 6.377 19 C 0.048 3.952 20 C -0.113 4.113 21 C -0.082 4.082 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.121 4.121 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.426 0.574 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.009 0.991 36 H 0.007 0.993 37 H 0.267 0.733 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.594 -28.305 7.153 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.118 3.882 3 C -0.005 4.005 4 N -0.864 5.864 5 S 2.720 3.280 6 O -0.982 6.982 7 O -0.987 6.987 8 C -0.723 4.723 9 C -0.018 4.018 10 C -0.579 4.579 11 H 0.092 0.908 12 C -0.202 4.202 13 N -0.573 5.573 14 Si 0.797 3.203 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.182 1.182 18 O -0.297 6.297 19 C -0.028 4.028 20 C -0.150 4.150 21 C -0.082 4.082 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.122 4.122 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.263 0.737 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.027 0.973 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.222 -27.367 7.187 28.772 hybrid contribution 1.009 0.312 -0.172 1.069 sum -4.213 -27.055 7.015 28.265 Atomic orbital electron populations 1.22398 0.93510 1.03380 1.03735 1.20194 0.94084 0.90268 0.83695 1.21612 0.98905 0.90580 0.89364 1.55214 1.73910 1.24838 1.32436 1.04357 0.77875 0.72867 0.72866 1.93498 1.78529 1.81677 1.44503 1.93505 1.73289 1.82810 1.49097 1.30363 1.23165 1.06449 1.12289 1.18827 0.98865 0.87679 0.96476 1.21516 0.92278 0.92852 1.51214 0.90775 1.26106 1.03412 0.96238 0.94427 1.70097 1.36303 1.00117 1.50802 0.85317 0.78438 0.77872 0.78654 1.19627 1.20722 1.18231 1.88102 1.80614 1.21675 1.39262 1.22913 0.98935 0.80146 1.00840 1.21182 1.02104 1.00025 0.91707 1.19785 0.98269 0.93654 0.96495 1.21361 1.00084 1.01020 0.91813 1.21477 0.98626 0.94845 0.98720 1.21392 0.98897 0.95878 0.98658 1.21338 1.00139 1.00382 0.92414 1.20000 1.01914 0.95360 0.94956 0.91046 0.90671 0.90936 0.90078 0.88540 0.73706 0.84121 0.84169 0.97251 0.97497 0.92371 0.86451 0.91565 0.89570 0.87546 0.83823 0.83763 0.84361 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 8.16 71.98 0.59 -2.59 16 2 C 0.16 3.22 0.64 -11.55 -0.01 3.22 16 3 C 0.12 2.87 4.99 86.38 0.43 3.30 16 4 N -1.10 -28.96 5.28 -187.49 -0.99 -29.95 16 5 S 2.62 94.86 5.46 -56.49 -0.31 94.56 16 6 O -0.99 -41.02 17.50 -127.65 -2.23 -43.25 16 7 O -1.00 -42.30 18.08 -127.65 -2.31 -44.61 16 8 C -0.59 -22.88 6.01 71.98 0.43 -22.45 16 9 C 0.02 1.08 4.98 29.85 0.15 1.23 16 10 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 11 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 12 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 13 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 14 Si 0.97 43.72 29.54 68.60 2.03 45.74 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 O -0.38 -7.60 9.96 -148.98 -1.48 -9.08 16 19 C 0.05 0.64 6.73 71.97 0.48 1.13 16 20 C -0.11 -1.39 6.00 29.85 0.18 -1.22 16 21 C -0.08 -1.37 5.78 -19.84 -0.11 -1.49 16 22 C -0.12 -1.78 9.67 22.31 0.22 -1.56 16 23 C -0.12 -1.69 10.05 22.24 0.22 -1.47 16 24 C -0.13 -2.15 10.05 22.23 0.22 -1.93 16 25 C -0.12 -2.41 8.94 22.32 0.20 -2.21 16 26 C -0.12 -2.37 4.75 -19.86 -0.09 -2.47 16 27 H 0.07 1.33 6.88 -2.39 -0.02 1.31 16 28 H 0.07 1.15 6.48 -2.39 -0.02 1.13 16 29 H 0.07 1.34 8.07 -2.39 -0.02 1.32 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 2.25 5.86 -2.39 -0.01 2.24 16 32 H 0.43 9.87 7.52 -96.75 -0.73 9.14 16 33 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16 34 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.01 0.38 8.14 -2.38 -0.02 0.37 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 0.79 6.21 -2.39 -0.01 0.78 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.13 2.39 6.45 -2.91 -0.02 2.38 16 Total: -1.00 -77.38 374.56 -1.13 -78.51 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.28 Total: 23.35 kcal Atomic # 6 Polarization: -61.93 SS G_CDS: 3.60 Total: -58.33 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -0.71 Total: -86.89 kcal Atomic # 8 Polarization: -90.92 SS G_CDS: -6.03 Total: -96.94 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 94.86 SS G_CDS: -0.31 Total: 94.56 kcal Total: -77.38 -1.13 -78.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882735007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.712 kcal (2) G-P(sol) polarization free energy of solvation -77.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds