Wall clock time and date at job start Sat Apr 11 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 11 11 C 1.38241 * 119.99819 * 269.72426 * 10 9 7 12 12 C 1.38234 * 119.99835 * 179.74983 * 11 10 9 13 13 C 1.38243 * 119.99848 * 0.55011 * 12 11 10 14 14 S 1.76201 * 119.99749 * 179.72451 * 13 12 11 15 15 O 1.42097 * 106.40290 * 23.51820 * 14 13 12 16 16 O 1.42098 * 106.40069 * 156.43676 * 14 13 12 17 17 N 1.65596 * 107.21867 * 269.97958 * 14 13 12 18 18 C 1.46497 * 120.00100 * 65.00043 * 17 14 13 19 19 C 1.53000 * 109.47229 * 165.00072 * 18 17 14 20 20 H 1.09006 * 109.52415 * 305.00311 * 19 18 17 21 21 C 1.53171 * 109.52648 * 184.87315 * 19 18 17 22 22 C 1.53188 * 109.03649 * 183.17541 * 21 19 18 23 23 C 1.53089 * 109.21170 * 56.88799 * 22 21 19 24 24 O 1.42908 * 109.41237 * 302.42625 * 23 22 21 25 25 C 1.42898 * 114.09805 * 61.16225 * 24 23 22 26 26 C 1.38234 * 120.00004 * 359.70549 * 13 12 11 27 27 C 1.38236 * 120.00232 * 0.02562 * 26 13 12 28 28 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 30 30 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 31 31 H 1.07997 * 119.99769 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.99983 * 180.27463 * 12 11 10 33 33 H 0.97003 * 119.99677 * 245.00118 * 17 14 13 34 34 H 1.09007 * 109.47359 * 284.99778 * 18 17 14 35 35 H 1.09001 * 109.47200 * 44.99975 * 18 17 14 36 36 H 1.09001 * 109.54515 * 302.98334 * 21 19 18 37 37 H 1.09005 * 109.54246 * 63.24866 * 21 19 18 38 38 H 1.08998 * 109.46535 * 296.98353 * 22 21 19 39 39 H 1.08999 * 109.57696 * 176.85653 * 22 21 19 40 40 H 1.09000 * 109.47750 * 182.44877 * 23 22 21 41 41 H 1.08992 * 109.49037 * 62.41441 * 23 22 21 42 42 H 1.09003 * 109.47917 * 178.85807 * 25 24 23 43 43 H 1.08991 * 109.49265 * 58.82884 * 25 24 23 44 44 H 1.08001 * 119.99896 * 180.02562 * 26 13 12 45 45 H 1.07991 * 120.00330 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6753 -4.1736 -1.1977 12 6 3.5776 -5.2208 -1.1978 13 6 4.0265 -5.7465 -0.0006 14 16 5.1711 -7.0861 -0.0007 15 8 5.8455 -7.0376 -1.2505 16 8 5.8459 -7.0373 1.2489 17 7 4.2870 -8.4863 -0.0004 18 6 3.4424 -8.8194 -1.1501 19 6 3.0392 -10.2935 -1.0766 20 1 3.9334 -10.9124 -1.0009 21 6 2.2585 -10.6743 -2.3382 22 6 1.7924 -12.1285 -2.2175 23 6 0.9554 -12.2853 -0.9453 24 8 1.7315 -11.8859 0.1861 25 6 2.1540 -10.5212 0.1515 26 6 3.5776 -5.2209 1.1966 27 6 2.6795 -4.1700 1.1966 28 1 -0.4849 -0.8401 0.0004 29 1 0.6248 -2.5571 0.8897 30 1 0.6241 -2.5567 -0.8903 31 1 2.3212 -3.7658 -2.1330 32 1 3.9286 -5.6312 -2.1331 33 1 4.3284 -9.0858 0.7610 34 1 2.5476 -8.1970 -1.1362 35 1 3.9958 -8.6396 -2.0718 36 1 1.3915 -10.0218 -2.4414 37 1 2.9023 -10.5681 -3.2114 38 1 2.6608 -12.7852 -2.1654 39 1 1.1883 -12.3917 -3.0858 40 1 0.6577 -13.3278 -0.8323 41 1 0.0662 -11.6589 -1.0156 42 1 2.7198 -10.2928 1.0548 43 1 1.2807 -9.8715 0.0956 44 1 3.9286 -5.6313 2.1319 45 1 2.3285 -3.7597 2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884967224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:47 Heat of formation + Delta-G solvation = -123.441084 kcal Electronic energy + Delta-G solvation = -27029.087701 eV Core-core repulsion = 23137.285229 eV Total energy + Delta-G solvation = -3891.802473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90840 -38.92897 -37.24224 -36.28158 -35.83448 -34.03840 -33.66943 -31.55997 -31.29342 -30.69067 -27.13301 -26.22831 -25.46520 -23.58446 -22.61731 -22.37661 -21.20523 -20.62568 -19.48828 -17.98473 -17.48082 -16.96313 -16.68485 -16.58143 -16.18348 -15.32819 -15.28942 -14.99375 -14.71384 -14.46746 -14.15964 -13.93384 -13.76891 -13.60540 -13.30471 -13.22123 -13.07886 -12.64122 -12.33512 -12.11176 -12.07852 -11.99962 -11.82864 -11.66738 -11.65445 -11.53362 -11.05561 -10.93297 -10.88936 -10.72171 -10.59129 -10.26968 -10.10360 -9.87428 -9.70514 -9.29391 -8.69807 -8.51730 -8.34119 -6.54136 -4.26984 0.41801 1.21659 1.68128 2.97329 3.36349 3.39230 3.45129 3.55457 3.68277 4.01348 4.22695 4.28831 4.31347 4.43479 4.45539 4.50689 4.68251 4.86664 5.00158 5.05838 5.11848 5.13897 5.16931 5.22154 5.23902 5.31355 5.36014 5.48695 5.54692 5.56868 5.62998 5.69648 5.76169 5.78592 5.89690 6.12315 6.20591 6.39111 6.68318 6.69486 6.72977 6.78709 6.93817 7.27013 7.33851 7.90082 8.26417 8.66719 9.44185 10.85404 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002589 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.118060 B =10814.308502 C =11790.047108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.073 2.927 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.597 4.597 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.031 3.969 11 C -0.145 4.145 12 C -0.024 4.024 13 C -0.703 4.703 14 S 2.699 3.301 15 O -0.963 6.963 16 O -0.964 6.964 17 N -1.121 6.121 18 C 0.122 3.878 19 C -0.129 4.129 20 H 0.090 0.910 21 C -0.119 4.119 22 C -0.155 4.155 23 C 0.057 3.943 24 O -0.382 6.382 25 C 0.062 3.938 26 C -0.020 4.020 27 C -0.146 4.146 28 H 0.269 0.731 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.416 0.584 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.131 0.869 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -24.280 -3.100 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.901 3.099 4 H -0.212 1.212 5 H -0.208 1.208 6 H -0.213 1.213 7 C -0.635 4.635 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.031 3.969 11 C -0.164 4.164 12 C -0.043 4.043 13 C -0.792 4.792 14 S 2.792 3.208 15 O -0.953 6.953 16 O -0.955 6.955 17 N -0.881 5.881 18 C -0.004 4.004 19 C -0.149 4.149 20 H 0.108 0.892 21 C -0.157 4.157 22 C -0.193 4.193 23 C -0.019 4.019 24 O -0.300 6.300 25 C -0.014 4.014 26 C -0.040 4.040 27 C -0.164 4.164 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.251 0.749 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.149 0.851 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.772 -22.587 -3.123 23.112 hybrid contribution -0.560 -1.275 0.091 1.396 sum 3.212 -23.863 -3.032 24.268 Atomic orbital electron populations 1.70777 1.06866 1.30674 1.45926 1.25922 0.96448 1.02732 0.93341 0.83470 0.74709 0.74716 0.77011 1.21219 1.20780 1.21295 1.21856 0.94453 0.90401 1.56802 0.92862 1.18656 0.93325 0.91319 0.97722 1.20871 0.92218 0.91575 0.92235 1.21215 0.99227 0.97253 0.98734 1.20782 0.93138 0.94622 0.95782 1.30348 1.25099 1.23944 0.99853 1.01538 0.73293 0.72607 0.73376 1.93559 1.70845 1.86452 1.44464 1.93574 1.71485 1.86472 1.43926 1.55619 1.64716 1.39721 1.28027 1.21312 0.94692 0.95855 0.88563 1.22006 1.00204 0.96023 0.96689 0.89207 1.21617 1.00385 0.96476 0.97253 1.22180 1.01153 0.97235 0.98722 1.22612 0.93072 1.00723 0.85539 1.87952 1.71686 1.27558 1.42824 1.22674 0.97533 0.83242 0.97997 1.20774 0.92947 0.94382 0.95848 1.21223 0.99230 0.97227 0.98767 0.92003 0.95670 0.95655 0.85418 0.85160 0.74946 0.91146 0.89631 0.91163 0.90716 0.90946 0.90609 0.88904 0.93035 0.88717 0.92544 0.85104 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.58 13.65 55.43 0.76 -25.83 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.07 24.71 29.90 -169.99 -5.08 19.63 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.60 -16.32 9.09 -34.44 -0.31 -16.64 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.64 4.42 -29.03 -0.13 0.51 16 10 C 0.03 0.64 5.07 -104.62 -0.53 0.11 16 11 C -0.15 -2.64 9.70 -39.58 -0.38 -3.03 16 12 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 13 C -0.70 -10.64 5.95 -39.58 -0.24 -10.88 16 14 S 2.70 35.52 5.74 -107.50 -0.62 34.90 16 15 O -0.96 -14.94 16.75 -57.17 -0.96 -15.89 16 16 O -0.96 -15.06 17.28 -57.17 -0.99 -16.04 16 17 N -1.12 -10.20 5.88 -10.61 -0.06 -10.26 16 18 C 0.12 0.98 5.62 -4.04 -0.02 0.95 16 19 C -0.13 -0.89 2.49 -90.48 -0.23 -1.12 16 20 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.12 -0.72 5.32 -26.55 -0.14 -0.86 16 22 C -0.16 -0.87 6.13 -26.59 -0.16 -1.04 16 23 C 0.06 0.37 6.84 37.20 0.25 0.63 16 24 O -0.38 -3.42 10.77 -35.23 -0.38 -3.79 16 25 C 0.06 0.47 5.97 37.21 0.22 0.69 16 26 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 27 C -0.15 -2.68 9.70 -39.58 -0.38 -3.06 16 28 H 0.27 7.78 7.22 -40.82 -0.29 7.48 16 29 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 30 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 31 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 32 H 0.13 1.72 7.62 -52.49 -0.40 1.32 16 33 H 0.42 2.97 7.45 -34.47 -0.26 2.72 16 34 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 35 H 0.09 0.69 7.75 -51.93 -0.40 0.28 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.64 6.98 -51.93 -0.36 0.28 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 45 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -34.15 379.77 -11.30 -45.45 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.79 Total: 0.82 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -2.90 Total: -34.70 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.69 Total: -36.09 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -2.33 Total: -35.73 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Atomic # 16 Polarization: 35.52 SS G_CDS: -0.62 Total: 34.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.15 -11.30 -45.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884967224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.988 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds