Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 11 11 C 1.38241 * 119.99819 * 269.72426 * 10 9 7 12 12 C 1.38234 * 119.99835 * 179.74983 * 11 10 9 13 13 C 1.38243 * 119.99848 * 0.55011 * 12 11 10 14 14 S 1.76201 * 119.99749 * 179.72451 * 13 12 11 15 15 O 1.42097 * 106.40290 * 23.51820 * 14 13 12 16 16 O 1.42098 * 106.40069 * 156.43676 * 14 13 12 17 17 N 1.65596 * 107.21867 * 269.97958 * 14 13 12 18 18 C 1.46497 * 120.00100 * 65.00043 * 17 14 13 19 19 C 1.53000 * 109.47229 * 165.00072 * 18 17 14 20 20 H 1.09006 * 109.52415 * 305.00311 * 19 18 17 21 21 C 1.53171 * 109.52648 * 184.87315 * 19 18 17 22 22 C 1.53188 * 109.03649 * 183.17541 * 21 19 18 23 23 C 1.53089 * 109.21170 * 56.88799 * 22 21 19 24 24 O 1.42908 * 109.41237 * 302.42625 * 23 22 21 25 25 C 1.42898 * 114.09805 * 61.16225 * 24 23 22 26 26 C 1.38234 * 120.00004 * 359.70549 * 13 12 11 27 27 C 1.38236 * 120.00232 * 0.02562 * 26 13 12 28 28 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 30 30 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 31 31 H 1.07997 * 119.99769 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.99983 * 180.27463 * 12 11 10 33 33 H 0.97003 * 119.99677 * 245.00118 * 17 14 13 34 34 H 1.09007 * 109.47359 * 284.99778 * 18 17 14 35 35 H 1.09001 * 109.47200 * 44.99975 * 18 17 14 36 36 H 1.09001 * 109.54515 * 302.98334 * 21 19 18 37 37 H 1.09005 * 109.54246 * 63.24866 * 21 19 18 38 38 H 1.08998 * 109.46535 * 296.98353 * 22 21 19 39 39 H 1.08999 * 109.57696 * 176.85653 * 22 21 19 40 40 H 1.09000 * 109.47750 * 182.44877 * 23 22 21 41 41 H 1.08992 * 109.49037 * 62.41441 * 23 22 21 42 42 H 1.09003 * 109.47917 * 178.85807 * 25 24 23 43 43 H 1.08991 * 109.49265 * 58.82884 * 25 24 23 44 44 H 1.08001 * 119.99896 * 180.02562 * 26 13 12 45 45 H 1.07991 * 120.00330 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6753 -4.1736 -1.1977 12 6 3.5776 -5.2208 -1.1978 13 6 4.0265 -5.7465 -0.0006 14 16 5.1711 -7.0861 -0.0007 15 8 5.8455 -7.0376 -1.2505 16 8 5.8459 -7.0373 1.2489 17 7 4.2870 -8.4863 -0.0004 18 6 3.4424 -8.8194 -1.1501 19 6 3.0392 -10.2935 -1.0766 20 1 3.9334 -10.9124 -1.0009 21 6 2.2585 -10.6743 -2.3382 22 6 1.7924 -12.1285 -2.2175 23 6 0.9554 -12.2853 -0.9453 24 8 1.7315 -11.8859 0.1861 25 6 2.1540 -10.5212 0.1515 26 6 3.5776 -5.2209 1.1966 27 6 2.6795 -4.1700 1.1966 28 1 -0.4849 -0.8401 0.0004 29 1 0.6248 -2.5571 0.8897 30 1 0.6241 -2.5567 -0.8903 31 1 2.3212 -3.7658 -2.1330 32 1 3.9286 -5.6312 -2.1331 33 1 4.3284 -9.0858 0.7610 34 1 2.5476 -8.1970 -1.1362 35 1 3.9958 -8.6396 -2.0718 36 1 1.3915 -10.0218 -2.4414 37 1 2.9023 -10.5681 -3.2114 38 1 2.6608 -12.7852 -2.1654 39 1 1.1883 -12.3917 -3.0858 40 1 0.6577 -13.3278 -0.8323 41 1 0.0662 -11.6589 -1.0156 42 1 2.7198 -10.2928 1.0548 43 1 1.2807 -9.8715 0.0956 44 1 3.9286 -5.6313 2.1319 45 1 2.3285 -3.7597 2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884967224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = -146.468557 kcal Electronic energy + Delta-G solvation = -27030.086248 eV Core-core repulsion = 23137.285229 eV Total energy + Delta-G solvation = -3892.801019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46102 -40.32659 -38.39581 -37.03345 -36.95317 -35.97531 -34.23778 -33.26452 -32.04234 -31.88272 -28.92019 -26.85706 -25.98067 -25.52423 -23.83261 -23.06600 -22.74262 -21.19879 -20.49226 -19.18894 -18.97401 -18.45684 -17.46784 -17.25002 -16.89124 -16.56311 -16.38854 -15.86140 -15.69362 -15.65418 -15.47512 -15.22377 -15.07744 -14.59240 -14.53461 -14.23323 -13.85306 -13.62701 -13.55849 -13.55202 -13.41051 -13.25700 -13.18280 -12.76118 -12.57871 -12.51566 -12.20363 -12.12620 -12.02641 -11.98082 -11.69085 -11.58314 -11.22920 -11.14923 -10.64092 -10.57384 -10.37653 -10.03990 -9.98710 -8.75426 -6.49484 -0.67319 -0.14253 0.31743 1.49901 1.57415 1.76178 1.97096 2.43573 2.54552 2.76285 2.93212 3.07008 3.27619 3.72635 3.77091 3.77379 3.85554 3.91230 4.01454 4.04201 4.13445 4.34421 4.37264 4.38255 4.49506 4.53636 4.60029 4.70892 4.71988 4.77173 4.80874 4.82998 4.95227 4.97465 5.01981 5.08310 5.10068 5.13876 5.22526 5.23282 5.40941 5.71741 5.77434 5.89254 6.02130 6.06890 6.25760 6.46819 7.29713 8.63959 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002589 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.118060 B =10814.308502 C =11790.047108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.029 4.029 3 Si 1.117 2.883 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.608 4.608 8 H 0.045 0.955 9 C 0.032 3.968 10 C -0.001 4.001 11 C -0.155 4.155 12 C -0.017 4.017 13 C -0.698 4.698 14 S 2.729 3.271 15 O -0.981 6.981 16 O -0.985 6.985 17 N -1.105 6.105 18 C 0.114 3.886 19 C -0.121 4.121 20 H 0.090 0.910 21 C -0.121 4.121 22 C -0.151 4.151 23 C 0.050 3.950 24 O -0.403 6.403 25 C 0.057 3.943 26 C -0.017 4.017 27 C -0.157 4.157 28 H 0.259 0.741 29 H 0.009 0.991 30 H 0.011 0.989 31 H 0.129 0.871 32 H 0.160 0.840 33 H 0.428 0.572 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.157 0.843 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -25.833 -3.581 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.228 4.228 3 Si 0.938 3.062 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.645 4.645 8 H 0.063 0.937 9 C -0.005 4.005 10 C -0.002 4.002 11 C -0.174 4.174 12 C -0.036 4.036 13 C -0.785 4.785 14 S 2.819 3.181 15 O -0.971 6.971 16 O -0.975 6.975 17 N -0.868 5.868 18 C -0.011 4.011 19 C -0.142 4.142 20 H 0.108 0.892 21 C -0.160 4.160 22 C -0.189 4.189 23 C -0.026 4.026 24 O -0.322 6.322 25 C -0.020 4.020 26 C -0.036 4.036 27 C -0.176 4.176 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.147 0.853 32 H 0.177 0.823 33 H 0.265 0.735 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.074 0.926 44 H 0.174 0.826 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.198 -24.145 -3.593 24.958 hybrid contribution -0.996 -0.985 0.231 1.420 sum 4.202 -25.130 -3.362 25.700 Atomic orbital electron populations 1.70891 1.07762 1.30127 1.48029 1.27348 0.96553 1.06421 0.92470 0.82918 0.74116 0.71174 0.77947 1.19689 1.20390 1.19813 1.22171 0.94252 0.92116 1.56008 0.93705 1.18432 0.93732 0.92204 0.96094 1.20615 0.93377 0.91991 0.94184 1.21283 0.99998 0.98137 0.97942 1.21061 0.91836 0.93357 0.97325 1.30836 1.24075 1.24232 0.99350 1.00693 0.72660 0.72460 0.72332 1.93540 1.71373 1.86839 1.45302 1.93546 1.72201 1.86892 1.44872 1.55259 1.64445 1.38092 1.29028 1.21531 0.94742 0.96761 0.88091 1.21932 1.00176 0.95116 0.96938 0.89172 1.21662 1.00533 0.96775 0.96994 1.22157 1.01100 0.96908 0.98753 1.22782 0.93118 1.01340 0.85381 1.87921 1.72116 1.28149 1.44016 1.22768 0.97762 0.82860 0.98581 1.21028 0.91855 0.93278 0.97414 1.21274 1.00093 0.98190 0.98012 0.93132 0.97310 0.97125 0.85317 0.82252 0.73470 0.90484 0.89115 0.90912 0.89965 0.91218 0.89223 0.88000 0.92780 0.88217 0.92589 0.82565 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 13.65 21.45 0.29 -55.69 16 2 C -0.03 -1.67 5.46 84.65 0.46 -1.21 16 3 Si 1.12 49.72 29.90 68.60 2.05 51.77 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.61 -34.07 9.09 25.60 0.23 -33.84 16 8 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 9 C 0.03 1.63 4.42 29.10 0.13 1.75 16 10 C 0.00 -0.05 5.07 -19.86 -0.10 -0.16 16 11 C -0.15 -5.58 9.70 22.27 0.22 -5.37 16 12 C -0.02 -0.49 9.52 22.27 0.21 -0.28 16 13 C -0.70 -19.58 5.95 22.27 0.13 -19.44 16 14 S 2.73 64.39 5.74 -56.49 -0.32 64.07 16 15 O -0.98 -27.59 16.75 -128.00 -2.14 -29.74 16 16 O -0.98 -28.20 17.28 -128.00 -2.21 -30.41 16 17 N -1.10 -16.96 5.88 -187.49 -1.10 -18.06 16 18 C 0.11 1.51 5.62 86.38 0.49 2.00 16 19 C -0.12 -1.40 2.49 -10.70 -0.03 -1.42 16 20 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 21 C -0.12 -1.19 5.32 30.71 0.16 -1.02 16 22 C -0.15 -1.39 6.13 30.69 0.19 -1.20 16 23 C 0.05 0.58 6.84 72.01 0.49 1.07 16 24 O -0.40 -6.64 10.77 -148.98 -1.60 -8.24 16 25 C 0.06 0.76 5.97 72.01 0.43 1.19 16 26 C -0.02 -0.51 9.52 22.27 0.21 -0.29 16 27 C -0.16 -5.77 9.70 22.27 0.22 -5.56 16 28 H 0.26 15.60 7.22 -92.71 -0.67 14.93 16 29 H 0.01 0.46 7.95 -2.39 -0.02 0.44 16 30 H 0.01 0.55 7.95 -2.39 -0.02 0.53 16 31 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.16 3.72 7.62 -2.91 -0.02 3.69 16 33 H 0.43 4.88 7.45 -96.75 -0.72 4.16 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.09 1.17 7.75 -2.39 -0.02 1.15 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 1.16 6.98 -2.39 -0.02 1.14 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.16 3.89 7.62 -2.91 -0.02 3.87 16 45 H 0.13 4.55 8.06 -2.92 -0.02 4.52 16 Total: -1.00 -73.56 379.77 -1.23 -74.79 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.37 Total: 15.30 kcal Atomic # 6 Polarization: -67.23 SS G_CDS: 3.44 Total: -63.78 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -0.81 Total: -73.75 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: -5.96 Total: -68.39 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.05 Total: 51.77 kcal Atomic # 16 Polarization: 64.39 SS G_CDS: -0.32 Total: 64.07 kcal Total: -73.56 -1.23 -74.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884967224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.677 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds