Wall clock time and date at job start Sat Apr 11 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38234 * 119.99770 * 269.72517 * 10 9 7 12 12 C 1.38235 * 119.99869 * 179.74639 * 11 10 9 13 13 C 1.38240 * 119.99660 * 0.52476 * 12 11 10 14 14 S 1.76211 * 119.99743 * 179.77043 * 13 12 11 15 15 O 1.42104 * 106.40205 * 23.52048 * 14 13 12 16 16 O 1.42093 * 106.39858 * 156.44280 * 14 13 12 17 17 N 1.65598 * 107.21463 * 269.98157 * 14 13 12 18 18 C 1.46495 * 120.00485 * 65.00421 * 17 14 13 19 19 C 1.53001 * 109.47373 * 164.99448 * 18 17 14 20 20 H 1.08994 * 109.48279 * 305.00144 * 19 18 17 21 21 C 1.53094 * 109.47752 * 184.97348 * 19 18 17 22 22 C 1.53179 * 109.15624 * 182.42342 * 21 19 18 23 23 C 1.53178 * 109.05135 * 56.96605 * 22 21 19 24 24 C 1.53092 * 109.16064 * 303.02652 * 23 22 21 25 25 O 1.42897 * 109.41843 * 57.60466 * 24 23 22 26 26 C 1.38225 * 120.00345 * 359.74955 * 13 12 11 27 27 C 1.38232 * 119.99860 * 89.99959 * 10 9 7 28 28 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 1.08001 * 120.00330 * 359.97438 * 11 10 9 32 32 H 1.08003 * 120.00521 * 180.29802 * 12 11 10 33 33 H 0.97006 * 119.99676 * 245.00127 * 17 14 13 34 34 H 1.09008 * 109.46938 * 284.99676 * 18 17 14 35 35 H 1.08999 * 109.47413 * 44.99403 * 18 17 14 36 36 H 1.08998 * 109.52343 * 302.31277 * 21 19 18 37 37 H 1.08993 * 109.52382 * 62.51038 * 21 19 18 38 38 H 1.09000 * 109.53792 * 297.09287 * 22 21 19 39 39 H 1.09008 * 109.61794 * 176.88333 * 22 21 19 40 40 H 1.08993 * 109.52569 * 183.11623 * 23 22 21 41 41 H 1.09002 * 109.52007 * 62.92963 * 23 22 21 42 42 H 1.09005 * 109.47726 * 297.62180 * 24 23 22 43 43 H 1.08999 * 109.48969 * 177.59723 * 24 23 22 44 44 H 1.07998 * 120.00220 * 179.97438 * 26 13 12 45 45 H 1.07998 * 120.00407 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6749 -4.1737 -1.1966 12 6 3.5772 -5.2210 -1.1967 13 6 4.0264 -5.7463 0.0005 14 16 5.1719 -7.0853 0.0005 15 8 5.8463 -7.0364 -1.2494 16 8 5.8466 -7.0361 1.2501 17 7 4.2886 -8.4860 0.0007 18 6 3.4442 -8.8198 -1.1489 19 6 3.0420 -10.2941 -1.0754 20 1 3.9369 -10.9117 -0.9997 21 6 2.2642 -10.6747 -2.3379 22 6 1.8132 -12.1345 -2.2295 23 6 0.9772 -12.3064 -0.9576 24 6 1.8048 -11.8628 0.2515 25 8 2.2178 -10.5066 0.0727 26 6 3.5774 -5.2210 1.1976 27 6 2.6793 -4.1700 1.1977 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 0.8903 30 1 0.6246 -2.5571 -0.8897 31 1 2.3203 -3.7665 -2.1319 32 1 3.9284 -5.6312 -2.1320 33 1 4.3303 -9.0855 0.7622 34 1 2.5491 -8.1978 -1.1350 35 1 3.9975 -8.6397 -2.0706 36 1 1.3907 -10.0301 -2.4358 37 1 2.9059 -10.5554 -3.2108 38 1 2.6875 -12.7836 -2.1817 39 1 1.2114 -12.3972 -3.0997 40 1 0.6984 -13.3539 -0.8437 41 1 0.0777 -11.6947 -1.0275 42 1 2.6835 -12.5011 0.3444 43 1 1.2004 -11.9426 1.1550 44 1 3.9280 -5.6317 2.1329 45 1 2.3281 -3.7598 2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884977428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:50 Heat of formation + Delta-G solvation = -141.480744 kcal Electronic energy + Delta-G solvation = -26985.704485 eV Core-core repulsion = 23093.119754 eV Total energy + Delta-G solvation = -3892.584731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40772 -40.21810 -38.34425 -36.96990 -36.30784 -35.59221 -34.51807 -33.31457 -32.12430 -31.95090 -29.24265 -27.56497 -25.59030 -24.95014 -23.75390 -23.16053 -22.46679 -21.24347 -20.42161 -18.99549 -18.59802 -18.44452 -17.44726 -17.36860 -16.85718 -16.77333 -16.37253 -15.98463 -15.66927 -15.38767 -15.28322 -15.19439 -14.63364 -14.44554 -14.33322 -14.09605 -13.92212 -13.69419 -13.50418 -13.40922 -13.38157 -13.21456 -13.14531 -12.73116 -12.65641 -12.65247 -12.19080 -12.12591 -12.03092 -11.96810 -11.69607 -11.58579 -11.43439 -11.21330 -10.65247 -10.49964 -10.35436 -9.95186 -9.94039 -8.27125 -6.40019 -0.61316 -0.05080 0.40861 1.38356 1.40114 1.48580 2.00937 2.34828 2.57040 2.78187 2.85411 3.05397 3.32462 3.72945 3.86793 3.94024 3.98137 3.98729 4.06141 4.16586 4.18191 4.25398 4.45451 4.48369 4.50720 4.54738 4.69643 4.76198 4.82629 4.84414 4.91878 4.94322 5.02394 5.11123 5.11783 5.19660 5.24204 5.25145 5.25789 5.34172 5.43836 5.66800 5.86730 5.93253 6.07475 6.10013 6.32711 6.71548 7.28965 8.82842 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.002584 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.201406 B =10833.800673 C =11791.020400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.004 4.004 11 C -0.154 4.154 12 C -0.019 4.019 13 C -0.701 4.701 14 S 2.729 3.271 15 O -0.979 6.979 16 O -0.986 6.986 17 N -1.101 6.101 18 C 0.114 3.886 19 C 0.085 3.915 20 H 0.079 0.921 21 C -0.153 4.153 22 C -0.121 4.121 23 C -0.157 4.157 24 C 0.054 3.946 25 O -0.397 6.397 26 C -0.020 4.020 27 C -0.157 4.157 28 H 0.268 0.732 29 H 0.012 0.988 30 H 0.014 0.986 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.428 0.572 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.153 0.847 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -27.514 -3.457 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.012 3.988 10 C -0.004 4.004 11 C -0.173 4.173 12 C -0.038 4.038 13 C -0.788 4.788 14 S 2.819 3.181 15 O -0.969 6.969 16 O -0.977 6.977 17 N -0.864 5.864 18 C -0.012 4.012 19 C 0.026 3.974 20 H 0.097 0.903 21 C -0.191 4.191 22 C -0.159 4.159 23 C -0.195 4.195 24 C -0.022 4.022 25 O -0.317 6.317 26 C -0.039 4.039 27 C -0.176 4.176 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.149 0.851 32 H 0.178 0.822 33 H 0.265 0.735 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.171 0.829 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.540 -27.062 -3.495 27.844 hybrid contribution -0.824 1.234 0.334 1.521 sum 4.716 -25.829 -3.160 26.445 Atomic orbital electron populations 1.70049 1.07552 1.28222 1.50669 1.25872 0.95774 1.02983 0.94333 0.85513 0.78343 0.78153 0.79157 1.19288 1.20359 1.19410 1.21262 0.93057 0.91028 1.51882 0.92797 1.18256 0.92969 0.90768 0.96818 1.20820 0.93284 0.92343 0.93978 1.21314 0.99829 0.98050 0.98123 1.21071 0.92045 0.93495 0.97195 1.30808 1.24294 1.24215 0.99472 1.00679 0.72687 0.72391 0.72362 1.93536 1.71397 1.86842 1.45125 1.93536 1.72351 1.86878 1.44906 1.55147 1.64036 1.38189 1.29006 1.21617 0.94807 0.96159 0.88580 1.22321 0.93597 0.94874 0.86589 0.90340 1.22206 1.01312 0.97842 0.97778 1.21592 1.00380 0.95706 0.98196 1.22199 0.99172 1.02640 0.95480 1.22739 0.98435 0.82404 0.98631 1.87949 1.69446 1.28521 1.45786 1.21010 0.92129 0.93432 0.97295 1.21296 0.99945 0.98113 0.98229 0.92359 0.97014 0.96784 0.85069 0.82240 0.73479 0.90858 0.87422 0.91256 0.88957 0.90911 0.90572 0.89505 0.92017 0.92092 0.88409 0.82940 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 13.29 21.45 0.28 -54.36 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -30.03 9.09 25.60 0.23 -29.80 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.05 2.53 5.10 29.10 0.15 2.68 16 10 C 0.00 -0.17 5.07 -19.87 -0.10 -0.27 16 11 C -0.15 -5.75 9.70 22.27 0.22 -5.54 16 12 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 13 C -0.70 -21.09 5.95 22.27 0.13 -20.96 16 14 S 2.73 69.39 5.74 -56.49 -0.32 69.07 16 15 O -0.98 -28.33 16.75 -128.00 -2.14 -30.47 16 16 O -0.99 -30.02 17.28 -128.00 -2.21 -32.24 16 17 N -1.10 -20.30 5.96 -187.49 -1.12 -21.41 16 18 C 0.11 1.84 5.89 86.38 0.51 2.35 16 19 C 0.09 1.16 2.74 30.63 0.08 1.25 16 20 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 21 C -0.15 -1.69 5.42 30.69 0.17 -1.52 16 22 C -0.12 -1.10 6.03 30.71 0.19 -0.91 16 23 C -0.16 -1.56 6.14 30.68 0.19 -1.37 16 24 C 0.05 0.63 6.84 72.01 0.49 1.13 16 25 O -0.40 -6.70 10.21 -148.98 -1.52 -8.22 16 26 C -0.02 -0.63 9.52 22.27 0.21 -0.42 16 27 C -0.16 -6.04 9.70 22.27 0.22 -5.82 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.01 0.64 8.09 -2.39 -0.02 0.62 16 30 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.16 3.90 7.62 -2.91 -0.02 3.87 16 33 H 0.43 6.70 8.51 -96.74 -0.82 5.88 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.11 1.46 7.75 -2.39 -0.02 1.44 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.15 4.18 7.62 -2.91 -0.02 4.16 16 45 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -71.83 383.51 -1.49 -73.32 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.16 Total: 17.02 kcal Atomic # 6 Polarization: -61.95 SS G_CDS: 3.36 Total: -58.59 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -0.83 Total: -75.77 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -5.88 Total: -70.93 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 69.39 SS G_CDS: -0.32 Total: 69.07 kcal Total: -71.83 -1.49 -73.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884977428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.157 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds