Wall clock time and date at job start Sat Apr 11 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47294 * 179.97438 * 9 7 2 11 11 C 1.38234 * 119.99672 * 269.72880 * 10 9 7 12 12 C 1.38241 * 119.99753 * 179.78919 * 11 10 9 13 13 C 1.38229 * 120.00067 * 0.43284 * 12 11 10 14 14 S 1.76198 * 120.00131 * 179.83762 * 13 12 11 15 15 O 1.42100 * 106.39980 * 23.51845 * 14 13 12 16 16 O 1.42107 * 106.40159 * 156.44047 * 14 13 12 17 17 N 1.65603 * 107.21693 * 269.97643 * 14 13 12 18 18 C 1.46507 * 119.99681 * 65.00176 * 17 14 13 19 19 C 1.53002 * 109.46929 * 164.99612 * 18 17 14 20 20 H 1.09007 * 109.47753 * 59.97364 * 19 18 17 21 21 C 1.53091 * 109.48050 * 179.97438 * 19 18 17 22 22 C 1.53179 * 109.16435 * 177.59111 * 21 19 18 23 23 C 1.53176 * 109.03515 * 303.02535 * 22 21 19 24 24 C 1.53090 * 109.16422 * 56.98086 * 23 22 21 25 25 O 1.42899 * 109.41310 * 302.38464 * 24 23 22 26 26 C 1.38239 * 120.00012 * 359.81591 * 13 12 11 27 27 C 1.38235 * 120.00081 * 359.97438 * 26 13 12 28 28 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 30 30 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 31 31 H 1.07997 * 119.99931 * 359.97438 * 11 10 9 32 32 H 1.08001 * 119.99585 * 180.27169 * 12 11 10 33 33 H 0.97001 * 120.00157 * 244.99505 * 17 14 13 34 34 H 1.08998 * 109.47068 * 284.99482 * 18 17 14 35 35 H 1.08996 * 109.47363 * 44.99746 * 18 17 14 36 36 H 1.08994 * 109.52291 * 297.50077 * 21 19 18 37 37 H 1.09000 * 109.51651 * 57.62673 * 21 19 18 38 38 H 1.09004 * 109.54015 * 62.88771 * 22 21 19 39 39 H 1.08993 * 109.54202 * 183.15629 * 22 21 19 40 40 H 1.09003 * 109.51660 * 176.88495 * 23 22 21 41 41 H 1.08997 * 109.52266 * 297.07017 * 23 22 21 42 42 H 1.08999 * 109.48593 * 62.37346 * 24 23 22 43 43 H 1.09009 * 109.47954 * 182.39532 * 24 23 22 44 44 H 1.07996 * 120.00182 * 179.97438 * 26 13 12 45 45 H 1.08004 * 120.00311 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6752 -4.1736 -1.1966 12 6 3.5769 -5.2214 -1.1967 13 6 4.0269 -5.7461 0.0004 14 16 5.1728 -7.0845 0.0004 15 8 5.8466 -7.0358 -1.2498 16 8 5.8482 -7.0346 1.2497 17 7 4.2901 -8.4857 0.0017 18 6 3.4452 -8.8202 -1.1475 19 6 3.0437 -10.2947 -1.0732 20 1 2.4912 -10.4749 -0.1510 21 6 2.1603 -10.6444 -2.2737 22 6 1.8122 -12.1353 -2.2245 23 6 3.1088 -12.9504 -2.1997 24 6 3.9554 -12.5117 -1.0020 25 8 4.2172 -11.1099 -1.0935 26 6 3.5781 -5.2205 1.1976 27 6 2.6798 -4.1698 1.1977 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6242 -2.5567 0.8904 30 1 0.6248 -2.5571 -0.8896 31 1 2.3206 -3.7662 -2.1319 32 1 3.9278 -5.6318 -2.1321 33 1 4.3325 -9.0849 0.7633 34 1 2.5500 -8.1986 -1.1335 35 1 3.9980 -8.6402 -2.0695 36 1 1.2442 -10.0550 -2.2358 37 1 2.6968 -10.4249 -3.1968 38 1 1.2325 -12.3449 -1.3255 39 1 1.2300 -12.4030 -3.1062 40 1 2.8709 -14.0103 -2.1089 41 1 3.6648 -12.7786 -3.1213 42 1 3.4154 -12.7212 -0.0787 43 1 4.8984 -13.0586 -1.0036 44 1 3.9293 -5.6307 2.1329 45 1 2.3288 -3.7594 2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884977429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:52 Heat of formation + Delta-G solvation = -145.525114 kcal Electronic energy + Delta-G solvation = -26949.467940 eV Core-core repulsion = 23056.707832 eV Total energy + Delta-G solvation = -3892.760108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42630 -40.32381 -38.37401 -36.99583 -36.33841 -35.96137 -34.53236 -33.25818 -32.14495 -32.03738 -28.91085 -27.59399 -25.51542 -24.95909 -23.83681 -23.19005 -22.72924 -21.30878 -20.44884 -19.17177 -18.94905 -18.47952 -17.60316 -17.23161 -16.77857 -16.56556 -16.34355 -15.78669 -15.67604 -15.48710 -15.40734 -15.27284 -15.04494 -14.53262 -14.48650 -14.01308 -13.82275 -13.77613 -13.55868 -13.54447 -13.50864 -13.24939 -13.17799 -12.79632 -12.56279 -12.52168 -12.18797 -12.11915 -11.98839 -11.95573 -11.68507 -11.57632 -11.19070 -11.14349 -10.63205 -10.55730 -10.35751 -10.03634 -9.98152 -8.74378 -6.48382 -0.66455 -0.14064 0.32116 1.50879 1.57488 1.77782 1.98895 2.44799 2.55529 2.71205 2.85587 3.07846 3.27803 3.70512 3.81786 3.89048 3.92260 3.96194 4.02027 4.05162 4.18887 4.19853 4.37787 4.38985 4.47250 4.54543 4.66364 4.70488 4.71617 4.78144 4.82206 4.92764 4.96255 4.99676 5.03140 5.09462 5.10154 5.17718 5.22086 5.22953 5.41772 5.72221 5.78278 5.89790 6.05672 6.07609 6.32169 6.47675 7.30598 8.64909 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.002432 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.372426 B =11508.736222 C =12378.333907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.030 4.030 3 Si 1.115 2.885 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.608 4.608 8 H 0.045 0.955 9 C 0.033 3.967 10 C -0.001 4.001 11 C -0.154 4.154 12 C -0.017 4.017 13 C -0.698 4.698 14 S 2.728 3.272 15 O -0.983 6.983 16 O -0.986 6.986 17 N -1.099 6.099 18 C 0.114 3.886 19 C 0.085 3.915 20 H 0.079 0.921 21 C -0.153 4.153 22 C -0.122 4.122 23 C -0.156 4.156 24 C 0.053 3.947 25 O -0.396 6.396 26 C -0.016 4.016 27 C -0.156 4.156 28 H 0.259 0.741 29 H 0.010 0.990 30 H 0.011 0.989 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.428 0.572 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.157 0.843 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 -27.762 -2.682 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.228 4.228 3 Si 0.936 3.064 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.646 4.646 8 H 0.063 0.937 9 C -0.004 4.004 10 C -0.001 4.001 11 C -0.172 4.172 12 C -0.036 4.036 13 C -0.785 4.785 14 S 2.818 3.182 15 O -0.973 6.973 16 O -0.976 6.976 17 N -0.862 5.862 18 C -0.012 4.012 19 C 0.026 3.974 20 H 0.097 0.903 21 C -0.191 4.191 22 C -0.159 4.159 23 C -0.194 4.194 24 C -0.023 4.023 25 O -0.316 6.316 26 C -0.035 4.035 27 C -0.175 4.175 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.265 0.735 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.174 0.826 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.174 -25.873 -2.859 26.540 hybrid contribution -1.076 -1.349 0.333 1.757 sum 4.098 -27.222 -2.526 27.645 Atomic orbital electron populations 1.70919 1.07741 1.30090 1.47974 1.27346 0.96566 1.06411 0.92500 0.82953 0.74192 0.71262 0.78012 1.20493 1.19558 1.19609 1.22151 0.94265 0.92133 1.56043 0.93694 1.18427 0.93714 0.92128 0.96145 1.20621 0.93375 0.92000 0.94144 1.21281 0.99934 0.98034 0.97999 1.21055 0.91897 0.93424 0.97263 1.30812 1.24050 1.24145 0.99447 1.00694 0.72764 0.72479 0.72297 1.93536 1.71504 1.86879 1.45384 1.93537 1.72221 1.86963 1.44888 1.55054 1.64567 1.37779 1.28764 1.21636 0.95526 0.95614 0.88401 1.22333 0.86855 0.89028 0.99166 0.90299 1.22203 1.00585 0.97955 0.98401 1.21591 0.97312 0.93828 1.03179 1.22196 0.96868 1.01069 0.99270 1.22757 1.01042 0.80927 0.97619 1.87972 1.31137 1.17656 1.94837 1.21025 0.91875 0.93299 0.97342 1.21280 1.00028 0.98115 0.98066 0.93166 0.97226 0.97089 0.85229 0.82381 0.73469 0.88397 0.89876 0.89243 0.91091 0.91055 0.90578 0.89489 0.91799 0.92184 0.88304 0.82582 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.65 21.45 0.29 -55.71 16 2 C -0.03 -1.69 5.46 84.65 0.46 -1.23 16 3 Si 1.11 49.77 29.90 68.60 2.05 51.82 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.61 -34.16 9.09 25.60 0.23 -33.93 16 8 H 0.04 2.54 7.74 -2.91 -0.02 2.51 16 9 C 0.03 1.65 4.42 29.10 0.13 1.78 16 10 C 0.00 -0.04 5.07 -19.86 -0.10 -0.14 16 11 C -0.15 -5.61 9.70 22.27 0.22 -5.40 16 12 C -0.02 -0.53 9.52 22.27 0.21 -0.31 16 13 C -0.70 -20.36 5.95 22.27 0.13 -20.23 16 14 S 2.73 70.57 5.74 -56.49 -0.32 70.24 16 15 O -0.98 -30.43 16.75 -128.00 -2.14 -32.58 16 16 O -0.99 -30.19 17.28 -128.00 -2.21 -32.40 16 17 N -1.10 -20.10 5.86 -187.48 -1.10 -21.20 16 18 C 0.11 1.81 5.92 86.38 0.51 2.32 16 19 C 0.09 1.14 2.73 30.63 0.08 1.23 16 20 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 21 C -0.15 -1.67 5.42 30.68 0.17 -1.51 16 22 C -0.12 -1.09 6.03 30.71 0.19 -0.90 16 23 C -0.16 -1.46 6.14 30.68 0.19 -1.27 16 24 C 0.05 0.60 6.84 72.01 0.49 1.09 16 25 O -0.40 -6.67 10.27 -148.98 -1.53 -8.20 16 26 C -0.02 -0.51 9.52 22.27 0.21 -0.29 16 27 C -0.16 -5.79 9.70 22.27 0.22 -5.58 16 28 H 0.26 15.59 7.22 -92.71 -0.67 14.92 16 29 H 0.01 0.50 7.95 -2.39 -0.02 0.48 16 30 H 0.01 0.57 7.95 -2.39 -0.02 0.55 16 31 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.16 3.89 7.62 -2.91 -0.02 3.87 16 33 H 0.43 6.29 8.65 -96.74 -0.84 5.45 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.44 7.75 -2.39 -0.02 1.42 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.16 4.00 7.62 -2.91 -0.02 3.98 16 45 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -74.09 382.33 -1.38 -75.47 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.25 Total: 16.92 kcal Atomic # 6 Polarization: -67.71 SS G_CDS: 3.34 Total: -64.37 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -0.81 Total: -76.91 kcal Atomic # 8 Polarization: -67.29 SS G_CDS: -5.89 Total: -73.17 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.82 kcal Atomic # 16 Polarization: 70.57 SS G_CDS: -0.32 Total: 70.24 kcal Total: -74.09 -1.38 -75.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884977429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.059 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds