Wall clock time and date at job start Sat Apr 11 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47333 * 270.00325 * 3 2 1 5 5 H 1.48502 * 109.46537 * 29.99863 * 3 2 1 6 6 H 1.48497 * 109.46885 * 149.99835 * 3 2 1 7 7 C 1.37883 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99349 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46499 * 179.97438 * 9 7 2 11 11 C 1.38240 * 120.00021 * 90.00223 * 10 9 7 12 12 C 1.38233 * 119.99897 * 180.02562 * 11 10 9 13 13 C 1.38230 * 120.00564 * 359.97438 * 12 11 10 14 14 S 1.76197 * 120.00363 * 179.97438 * 13 12 11 15 15 O 1.42100 * 106.39925 * 336.45775 * 14 13 12 16 16 O 1.42103 * 106.39966 * 203.53891 * 14 13 12 17 17 N 1.65597 * 107.21750 * 89.99871 * 14 13 12 18 18 C 1.46506 * 120.00079 * 65.00357 * 17 14 13 19 19 C 1.52996 * 109.47045 * 164.72323 * 18 17 14 20 20 C 1.53177 * 109.54516 * 294.55134 * 19 18 17 21 21 C 1.53086 * 109.16550 * 183.15623 * 20 19 18 22 22 O 1.42903 * 109.41712 * 57.60760 * 21 20 19 23 23 C 1.42896 * 114.10071 * 298.84536 * 22 21 20 24 24 C 1.53101 * 109.41449 * 61.15244 * 23 22 21 25 25 C 1.38239 * 119.99689 * 0.25312 * 13 12 11 26 26 C 1.38230 * 120.00440 * 270.02016 * 10 9 7 27 27 H 0.96999 * 120.00148 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47018 * 60.00272 * 9 7 2 29 29 H 1.08995 * 109.46845 * 299.99590 * 9 7 2 30 30 H 1.08004 * 119.99632 * 359.97438 * 11 10 9 31 31 H 1.08008 * 119.99674 * 179.97438 * 12 11 10 32 32 H 0.97005 * 120.00050 * 244.72378 * 17 14 13 33 33 H 1.08999 * 109.46682 * 284.72550 * 18 17 14 34 34 H 1.09000 * 109.47243 * 44.71866 * 18 17 14 35 35 H 1.08999 * 109.54679 * 54.82147 * 19 18 17 36 36 H 1.09002 * 109.52321 * 303.06605 * 20 19 18 37 37 H 1.09002 * 109.52083 * 63.25059 * 20 19 18 38 38 H 1.09000 * 109.47812 * 297.62501 * 21 20 19 39 39 H 1.09000 * 109.48062 * 177.59660 * 21 20 19 40 40 H 1.08998 * 109.47868 * 301.17760 * 23 22 21 41 41 H 1.08991 * 109.49651 * 181.14242 * 23 22 21 42 42 H 1.08996 * 109.52098 * 182.48453 * 24 23 22 43 43 H 1.08994 * 109.51967 * 62.30068 * 24 23 22 44 44 H 1.08000 * 120.00209 * 179.72407 * 25 13 12 45 45 H 1.08003 * 119.99688 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2304 -3.6445 -0.0027 11 6 2.6796 -4.1710 1.1940 12 6 3.5783 -5.2213 1.1930 13 6 4.0276 -5.7455 -0.0045 14 16 5.1737 -7.0838 -0.0057 15 8 5.8486 -7.0352 1.2439 16 8 5.8478 -7.0337 -1.2556 17 7 4.2911 -8.4850 -0.0062 18 6 3.4467 -8.8184 -1.1561 19 6 3.0508 -10.2947 -1.0871 20 6 4.2990 -11.1679 -1.2477 21 6 3.8838 -12.6414 -1.2565 22 8 2.9464 -12.8645 -2.3118 23 6 1.7391 -12.1099 -2.1891 24 6 2.0682 -10.6150 -2.2177 25 6 3.5820 -5.2160 -1.2012 26 6 2.6799 -4.1686 -1.2002 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8880 30 1 2.3289 -3.7611 2.1297 31 1 3.9295 -5.6323 2.1280 32 1 4.3363 -9.0870 0.7530 33 1 2.5490 -8.2003 -1.1389 34 1 3.9980 -8.6327 -2.0778 35 1 2.5806 -10.5017 -0.1258 36 1 4.7960 -10.9239 -2.1866 37 1 4.9800 -10.9863 -0.4162 38 1 3.4233 -12.8949 -0.3016 39 1 4.7633 -13.2659 -1.4133 40 1 1.2506 -12.3565 -1.2464 41 1 1.0734 -12.3515 -3.0176 42 1 1.1538 -10.0380 -2.0800 43 1 2.5201 -10.3599 -3.1762 44 1 3.9364 -5.6227 -2.1369 45 1 2.3296 -3.7568 -2.1352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884994351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:55 Heat of formation + Delta-G solvation = -120.117804 kcal Electronic energy + Delta-G solvation = -26893.045599 eV Core-core repulsion = 23001.387234 eV Total energy + Delta-G solvation = -3891.658365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.85197 -38.83450 -37.20730 -36.44140 -35.79241 -33.70691 -33.02959 -31.58906 -31.46098 -30.60904 -27.46049 -27.25493 -23.96672 -23.74450 -23.11520 -22.35514 -20.94742 -20.60249 -19.39753 -17.88972 -17.40387 -16.62554 -16.46689 -16.33651 -16.13119 -15.51873 -15.13679 -15.07344 -15.03400 -14.39633 -14.37070 -13.98513 -13.79134 -13.34358 -13.14977 -13.04481 -12.85513 -12.62658 -12.26306 -12.06921 -11.97632 -11.93789 -11.73081 -11.71845 -11.51379 -11.38308 -11.06691 -10.94993 -10.92803 -10.66853 -10.54627 -10.51075 -9.94690 -9.81093 -9.71689 -9.57351 -8.62334 -8.56122 -8.41761 -6.19407 -4.24478 0.47221 1.29403 1.76143 3.03081 3.22788 3.29416 3.33784 3.51481 3.72428 4.07598 4.20549 4.26874 4.35451 4.38455 4.50328 4.61276 4.82344 4.95693 5.01622 5.03046 5.13536 5.19439 5.20630 5.23920 5.29092 5.32909 5.44153 5.49368 5.62035 5.68181 5.69196 5.74245 5.81340 5.88084 5.97115 6.21692 6.29756 6.47352 6.75651 6.80801 6.81998 6.87893 7.26290 7.40014 7.56025 7.75671 8.10717 8.80318 9.40619 10.90608 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.002414 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.468371 B =11597.346367 C =12504.689952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.022 4.022 13 C -0.704 4.704 14 S 2.699 3.301 15 O -0.966 6.966 16 O -0.964 6.964 17 N -1.120 6.120 18 C 0.122 3.878 19 C -0.095 4.095 20 C -0.154 4.154 21 C 0.060 3.940 22 O -0.384 6.384 23 C 0.061 3.939 24 C -0.153 4.153 25 C -0.025 4.025 26 C -0.145 4.145 27 H 0.264 0.736 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.415 0.585 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 -24.180 -1.748 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.027 3.973 11 C -0.165 4.165 12 C -0.041 4.041 13 C -0.794 4.794 14 S 2.791 3.209 15 O -0.957 6.957 16 O -0.954 6.954 17 N -0.879 5.879 18 C -0.004 4.004 19 C -0.115 4.115 20 C -0.192 4.192 21 C -0.017 4.017 22 O -0.303 6.303 23 C -0.015 4.015 24 C -0.191 4.191 25 C -0.045 4.045 26 C -0.164 4.164 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.595 -24.009 -2.064 24.532 hybrid contribution -0.357 1.427 0.619 1.596 sum 4.238 -22.582 -1.445 23.022 Atomic orbital electron populations 1.69943 1.06070 1.27150 1.49809 1.25006 0.94935 0.99409 0.94796 0.86476 0.79832 0.82753 0.78338 1.20425 1.21014 1.19693 1.20966 0.93097 0.89454 1.52052 0.92291 1.18539 0.92644 0.89530 0.99029 1.21125 0.92190 0.91973 0.92058 1.21255 0.99117 0.97191 0.98916 1.20768 0.93105 0.94517 0.95740 1.30304 1.25229 1.23924 0.99907 1.01534 0.73347 0.72667 0.73332 1.93568 1.71605 1.86525 1.43985 1.93559 1.70938 1.86467 1.44432 1.55567 1.64812 1.39422 1.28086 1.21359 0.94696 0.96037 0.88357 1.21391 0.96296 0.93987 0.99809 1.22292 0.97804 0.95320 1.03775 1.22595 0.92851 0.95759 0.90464 1.87943 1.28337 1.65929 1.48099 1.22571 0.86758 0.90258 1.01948 1.22229 1.00027 0.97398 0.99457 1.20788 0.93272 0.94681 0.95714 1.21248 0.99086 0.97221 0.98884 0.92611 0.94718 0.94714 0.85343 0.85279 0.75073 0.91128 0.89969 0.90149 0.90414 0.90509 0.93211 0.88829 0.93157 0.88696 0.90175 0.90368 0.85273 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 10 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 11 C -0.15 -2.67 9.70 -39.58 -0.38 -3.06 16 12 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 13 C -0.70 -10.75 5.95 -39.58 -0.24 -10.99 16 14 S 2.70 35.77 5.74 -107.50 -0.62 35.15 16 15 O -0.97 -15.14 17.28 -57.17 -0.99 -16.13 16 16 O -0.96 -15.08 16.74 -57.17 -0.96 -16.03 16 17 N -1.12 -10.15 5.58 -10.61 -0.06 -10.21 16 18 C 0.12 0.99 5.62 -4.04 -0.02 0.97 16 19 C -0.09 -0.63 2.30 -90.44 -0.21 -0.83 16 20 C -0.15 -1.05 5.27 -26.60 -0.14 -1.19 16 21 C 0.06 0.40 6.84 37.20 0.25 0.65 16 22 O -0.38 -3.30 10.77 -35.23 -0.38 -3.68 16 23 C 0.06 0.40 6.84 37.21 0.25 0.65 16 24 C -0.15 -0.95 5.42 -26.59 -0.14 -1.10 16 25 C -0.03 -0.40 9.52 -39.58 -0.38 -0.77 16 26 C -0.15 -2.64 9.70 -39.58 -0.38 -3.02 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.13 2.24 8.06 -52.48 -0.42 1.81 16 31 H 0.13 1.78 7.62 -52.48 -0.40 1.38 16 32 H 0.42 2.86 8.42 -34.47 -0.29 2.57 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.71 7.75 -51.93 -0.40 0.30 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.47 7.67 -51.93 -0.40 0.07 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.13 1.73 7.61 -52.49 -0.40 1.33 16 45 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -33.37 382.36 -11.30 -44.67 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.92 Total: 0.38 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: -2.85 Total: -31.28 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.68 Total: -34.86 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -2.32 Total: -35.84 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 35.77 SS G_CDS: -0.62 Total: 35.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.37 -11.30 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884994351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.448 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds