Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86796 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47281 * 299.99694 * 3 2 1 6 6 H 1.48499 * 109.47278 * 59.99654 * 3 2 1 7 7 C 1.38659 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00157 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99552 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99912 * 185.05573 * 9 7 2 11 11 C 1.38880 * 120.06310 * 354.46010 * 10 9 7 12 12 C 1.38106 * 119.92712 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.06724 * 0.02939 * 12 11 10 14 14 C 1.50704 * 119.93019 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47298 * 89.99638 * 14 13 12 16 16 S 1.65603 * 120.00058 * 165.00289 * 15 14 13 17 17 O 1.42103 * 104.27442 * 308.92636 * 16 15 14 18 18 O 1.42094 * 104.28001 * 181.07124 * 16 15 14 19 19 C 1.81400 * 104.45207 * 64.99674 * 16 15 14 20 20 C 1.52993 * 109.47479 * 180.02562 * 19 16 15 21 21 C 1.52998 * 109.47423 * 180.02562 * 20 19 16 22 22 C 1.52998 * 109.47171 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.49948 * 243.74248 * 22 21 20 24 24 C 1.52996 * 117.49815 * 175.08495 * 22 21 20 25 25 C 1.38303 * 120.14192 * 0.24709 * 13 12 11 26 26 C 1.38100 * 120.06579 * 359.45007 * 25 13 12 27 27 H 0.97004 * 120.00312 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.03981 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96228 * 179.97438 * 12 11 10 30 30 H 1.09004 * 109.46996 * 329.99499 * 14 13 12 31 31 H 1.09006 * 109.46774 * 209.99895 * 14 13 12 32 32 H 0.96996 * 120.00101 * 345.00428 * 15 14 13 33 33 H 1.09000 * 109.46938 * 60.00004 * 19 16 15 34 34 H 1.09001 * 109.46897 * 300.00450 * 19 16 15 35 35 H 1.09001 * 109.46743 * 300.00272 * 20 19 16 36 36 H 1.09000 * 109.47260 * 59.99922 * 20 19 16 37 37 H 1.09001 * 109.46681 * 300.00005 * 21 20 19 38 38 H 1.09000 * 109.47210 * 59.99593 * 21 20 19 39 39 H 1.08997 * 115.54904 * 29.41464 * 22 21 20 40 40 H 1.09000 * 117.49617 * 0.02562 * 23 22 21 41 41 H 1.09000 * 117.49973 * 145.02190 * 23 22 21 42 42 H 1.09001 * 117.50326 * 214.98178 * 24 22 21 43 43 H 1.09002 * 117.50296 * 0.02562 * 24 22 21 44 44 H 1.07999 * 119.96849 * 179.70758 * 25 13 12 45 45 H 1.08003 * 120.03622 * 180.27218 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0951 12 6 4.2022 -4.5971 0.2037 13 6 3.5684 -5.8204 0.3243 14 6 4.3846 -7.0818 0.4421 15 7 4.6553 -7.3582 1.8551 16 16 5.2016 -8.8518 2.3167 17 8 4.2863 -9.7597 1.7192 18 8 5.3245 -8.7588 3.7293 19 6 6.8363 -8.9948 1.5436 20 6 7.4521 -10.3494 1.8994 21 6 8.8312 -10.4697 1.2478 22 6 9.4472 -11.8241 1.6042 23 6 10.7304 -11.8193 2.4372 24 6 10.7830 -12.1862 0.9521 25 6 2.1871 -5.8891 0.3314 26 6 1.4364 -4.7345 0.2294 27 1 -0.4851 0.8401 -0.0004 28 1 3.9526 -2.4846 0.0005 29 1 5.2810 -4.5472 0.1936 30 1 5.3272 -6.9557 -0.0906 31 1 3.8308 -7.9146 0.0085 32 1 4.5146 -6.6663 2.5202 33 1 7.4815 -8.1952 1.9075 34 1 6.7345 -8.9153 0.4613 35 1 7.5538 -10.4292 2.9817 36 1 6.8068 -11.1488 1.5352 37 1 8.7298 -10.3897 0.1655 38 1 9.4763 -9.6704 1.6124 39 1 8.7369 -12.6323 1.7786 40 1 11.1356 -10.8513 2.7317 41 1 10.8646 -12.6246 3.1595 42 1 10.9518 -13.2326 0.6978 43 1 11.2233 -11.4593 0.2695 44 1 1.6950 -6.8463 0.4210 45 1 0.3577 -4.7883 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884997692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -66.439419 kcal Electronic energy + Delta-G solvation = -25721.715996 eV Core-core repulsion = 21832.385301 eV Total energy + Delta-G solvation = -3889.330695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.19232 -38.26224 -37.28155 -37.01200 -36.04104 -34.68774 -34.56505 -32.35309 -30.28340 -29.52311 -28.29717 -25.80432 -24.54146 -22.96275 -22.64521 -22.06541 -20.96490 -20.71083 -19.38395 -18.10905 -17.77048 -17.13210 -16.67817 -16.52533 -15.96191 -15.59840 -14.99770 -14.76298 -14.73059 -14.55661 -14.14193 -13.83008 -13.65811 -13.36832 -13.08357 -12.93639 -12.80857 -12.71733 -12.56013 -12.22597 -12.15517 -12.07656 -11.98233 -11.72946 -11.65767 -11.49535 -11.34566 -11.10179 -10.90018 -10.75647 -10.71601 -10.52438 -10.48026 -10.31607 -9.50601 -9.39273 -8.92497 -8.28832 -7.32985 -6.53585 -4.12386 0.11544 2.06013 2.12774 2.77011 3.07394 3.08802 3.14249 3.33491 3.61295 3.89486 3.99068 4.06188 4.33315 4.42649 4.45900 4.49381 4.55635 4.75546 4.95220 4.97096 5.01284 5.09531 5.18797 5.20337 5.23711 5.26972 5.29076 5.47616 5.52510 5.56195 5.62152 5.63326 5.68538 5.75958 5.85885 5.94652 6.12483 6.32911 6.59969 6.79973 6.91976 7.01353 7.15834 7.25556 7.34580 7.71317 7.91061 8.91742 9.60310 10.64004 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.001845 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.840829 B =15175.916209 C =15897.178041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.054 4.054 13 C -0.206 4.206 14 C 0.173 3.827 15 N -1.113 6.113 16 S 2.609 3.391 17 O -0.957 6.957 18 O -0.962 6.962 19 C -0.633 4.633 20 C -0.109 4.109 21 C -0.081 4.081 22 C -0.158 4.158 23 C -0.182 4.182 24 C -0.181 4.181 25 C -0.054 4.054 26 C -0.194 4.194 27 H 0.271 0.729 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.420 0.580 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.648 -19.201 1.533 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.105 3.895 11 C -0.257 4.257 12 C -0.073 4.073 13 C -0.208 4.208 14 C 0.049 3.951 15 N -0.874 5.874 16 S 2.702 3.298 17 O -0.947 6.947 18 O -0.952 6.952 19 C -0.762 4.762 20 C -0.148 4.148 21 C -0.120 4.120 22 C -0.176 4.176 23 C -0.219 4.219 24 C -0.218 4.218 25 C -0.073 4.073 26 C -0.214 4.214 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.255 0.745 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.133 0.867 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.768 -19.735 1.905 26.623 hybrid contribution 1.007 1.536 -0.185 1.846 sum 18.776 -18.199 1.720 26.204 Atomic orbital electron populations 1.70045 1.06006 1.27760 1.45472 1.25325 0.95865 0.98945 0.96381 0.85624 0.79105 0.80222 0.78328 1.19076 1.20080 1.20073 1.21401 0.91878 0.80724 1.52932 0.88873 1.83982 1.34531 1.11569 1.77556 1.19446 0.90343 0.88052 0.91650 1.21151 0.93791 0.98943 1.11802 1.20615 0.98292 0.91647 0.96760 1.19073 0.93559 0.93319 1.14887 1.20001 0.98316 0.96944 0.79881 1.55748 1.82502 1.33003 1.16120 1.04966 0.76796 0.73670 0.74394 1.93598 1.58737 1.63357 1.79015 1.93599 1.87367 1.85714 1.28566 1.30668 1.24353 1.06444 1.14719 1.21298 0.97829 0.93497 1.02200 1.21137 0.94874 0.95147 1.00807 1.22389 0.90969 0.99246 1.05032 1.23073 1.01472 1.03235 0.94082 1.22980 1.00709 1.02277 0.95863 1.20577 0.92853 0.97000 0.96843 1.20237 0.99752 0.90242 1.11153 0.91923 0.85433 0.87380 0.92057 0.90292 0.74481 0.84848 0.84924 0.90191 0.90181 0.90995 0.91307 0.87528 0.88699 0.88821 0.88798 0.88759 0.86715 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.95 29.55 -169.99 -5.02 14.92 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.82 9.76 0.03 0.00 -4.82 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.24 -4.82 9.17 -39.39 -0.36 -5.18 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.21 -3.15 5.28 -104.57 -0.55 -3.70 16 14 C 0.17 1.98 6.25 -5.19 -0.03 1.95 16 15 N -1.11 -12.04 5.88 -11.65 -0.07 -12.11 16 16 S 2.61 27.18 5.46 -107.50 -0.59 26.59 16 17 O -0.96 -13.07 17.50 -57.54 -1.01 -14.08 16 18 O -0.96 -13.14 18.08 -57.54 -1.04 -14.18 16 19 C -0.63 -4.17 6.07 37.15 0.23 -3.95 16 20 C -0.11 -0.74 5.18 -26.74 -0.14 -0.88 16 21 C -0.08 -0.49 5.50 -26.73 -0.15 -0.63 16 22 C -0.16 -0.96 5.73 -90.62 -0.52 -1.48 16 23 C -0.18 -1.04 10.18 -26.70 -0.27 -1.31 16 24 C -0.18 -1.01 10.25 -26.70 -0.27 -1.28 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 26 C -0.19 -3.94 9.99 -39.40 -0.39 -4.34 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.08 0.88 7.63 -51.93 -0.40 0.48 16 32 H 0.42 4.62 8.61 -34.47 -0.30 4.33 16 33 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 39 H 0.11 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -34.15 392.60 -11.06 -45.21 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.71 Total: 5.75 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -3.30 Total: -29.33 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.69 Total: -35.98 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -2.05 Total: -33.07 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 27.18 SS G_CDS: -0.59 Total: 26.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.15 -11.06 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.234 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds