Wall clock time and date at job start Sat Apr 11 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86796 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47281 * 299.99694 * 3 2 1 6 6 H 1.48499 * 109.47278 * 59.99654 * 3 2 1 7 7 C 1.38659 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00157 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99552 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99912 * 185.05573 * 9 7 2 11 11 C 1.38880 * 120.06310 * 354.46010 * 10 9 7 12 12 C 1.38106 * 119.92712 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.06724 * 0.02939 * 12 11 10 14 14 C 1.50704 * 119.93019 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47298 * 89.99638 * 14 13 12 16 16 S 1.65603 * 120.00058 * 165.00289 * 15 14 13 17 17 O 1.42103 * 104.27442 * 308.92636 * 16 15 14 18 18 O 1.42094 * 104.28001 * 181.07124 * 16 15 14 19 19 C 1.81400 * 104.45207 * 64.99674 * 16 15 14 20 20 C 1.52993 * 109.47479 * 180.02562 * 19 16 15 21 21 C 1.52998 * 109.47423 * 180.02562 * 20 19 16 22 22 C 1.52998 * 109.47171 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.49948 * 243.74248 * 22 21 20 24 24 C 1.52996 * 117.49815 * 175.08495 * 22 21 20 25 25 C 1.38303 * 120.14192 * 0.24709 * 13 12 11 26 26 C 1.38100 * 120.06579 * 359.45007 * 25 13 12 27 27 H 0.97004 * 120.00312 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.03981 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96228 * 179.97438 * 12 11 10 30 30 H 1.09004 * 109.46996 * 329.99499 * 14 13 12 31 31 H 1.09006 * 109.46774 * 209.99895 * 14 13 12 32 32 H 0.96996 * 120.00101 * 345.00428 * 15 14 13 33 33 H 1.09000 * 109.46938 * 60.00004 * 19 16 15 34 34 H 1.09001 * 109.46897 * 300.00450 * 19 16 15 35 35 H 1.09001 * 109.46743 * 300.00272 * 20 19 16 36 36 H 1.09000 * 109.47260 * 59.99922 * 20 19 16 37 37 H 1.09001 * 109.46681 * 300.00005 * 21 20 19 38 38 H 1.09000 * 109.47210 * 59.99593 * 21 20 19 39 39 H 1.08997 * 115.54904 * 29.41464 * 22 21 20 40 40 H 1.09000 * 117.49617 * 0.02562 * 23 22 21 41 41 H 1.09000 * 117.49973 * 145.02190 * 23 22 21 42 42 H 1.09001 * 117.50326 * 214.98178 * 24 22 21 43 43 H 1.09002 * 117.50296 * 0.02562 * 24 22 21 44 44 H 1.07999 * 119.96849 * 179.70758 * 25 13 12 45 45 H 1.08003 * 120.03622 * 180.27218 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0951 12 6 4.2022 -4.5971 0.2037 13 6 3.5684 -5.8204 0.3243 14 6 4.3846 -7.0818 0.4421 15 7 4.6553 -7.3582 1.8551 16 16 5.2016 -8.8518 2.3167 17 8 4.2863 -9.7597 1.7192 18 8 5.3245 -8.7588 3.7293 19 6 6.8363 -8.9948 1.5436 20 6 7.4521 -10.3494 1.8994 21 6 8.8312 -10.4697 1.2478 22 6 9.4472 -11.8241 1.6042 23 6 10.7304 -11.8193 2.4372 24 6 10.7830 -12.1862 0.9521 25 6 2.1871 -5.8891 0.3314 26 6 1.4364 -4.7345 0.2294 27 1 -0.4851 0.8401 -0.0004 28 1 3.9526 -2.4846 0.0005 29 1 5.2810 -4.5472 0.1936 30 1 5.3272 -6.9557 -0.0906 31 1 3.8308 -7.9146 0.0085 32 1 4.5146 -6.6663 2.5202 33 1 7.4815 -8.1952 1.9075 34 1 6.7345 -8.9153 0.4613 35 1 7.5538 -10.4292 2.9817 36 1 6.8068 -11.1488 1.5352 37 1 8.7298 -10.3897 0.1655 38 1 9.4763 -9.6704 1.6124 39 1 8.7369 -12.6323 1.7786 40 1 11.1356 -10.8513 2.7317 41 1 10.8646 -12.6246 3.1595 42 1 10.9518 -13.2326 0.6978 43 1 11.2233 -11.4593 0.2695 44 1 1.6950 -6.8463 0.4210 45 1 0.3577 -4.7883 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884997692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:56 Heat of formation + Delta-G solvation = -89.814846 kcal Electronic energy + Delta-G solvation = -25722.729631 eV Core-core repulsion = 21832.385301 eV Total energy + Delta-G solvation = -3890.344330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80783 -38.67964 -38.67553 -38.09249 -36.96976 -35.81851 -35.06101 -34.24163 -31.79714 -30.90791 -28.79007 -27.57693 -25.86295 -23.62120 -23.42667 -23.08954 -22.17169 -21.38778 -20.21360 -19.85177 -18.95294 -18.50658 -17.61125 -17.26732 -16.57697 -16.43362 -16.37268 -16.17248 -15.77450 -15.53722 -15.34329 -15.18358 -15.08199 -14.42863 -14.30808 -13.96173 -13.76643 -13.48125 -13.44406 -13.41452 -13.24133 -13.12899 -13.03976 -12.93307 -12.43627 -12.37392 -12.33274 -12.12806 -12.09847 -12.03682 -11.93534 -11.68628 -11.18132 -11.01590 -10.81147 -10.73702 -10.28238 -9.77892 -8.97611 -8.47564 -6.15866 -0.67335 0.60319 0.62725 1.35966 1.43762 1.54252 1.89448 2.17509 2.81655 2.88105 2.94755 3.17265 3.31559 3.51070 3.53861 3.84700 3.88572 3.93949 4.06053 4.08324 4.10990 4.21560 4.32928 4.48371 4.51545 4.55377 4.61325 4.65931 4.80263 4.82479 4.83217 4.84295 5.04161 5.08275 5.08799 5.13356 5.16214 5.19768 5.29167 5.31063 5.44864 5.57103 5.71663 5.78684 6.02801 6.11246 6.21969 6.97288 7.78067 8.75791 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.001845 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.840829 B =15175.916209 C =15897.178041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.248 1.248 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.412 4.412 8 H 0.106 0.894 9 O -0.234 6.234 10 C 0.118 3.882 11 C -0.245 4.245 12 C -0.045 4.045 13 C -0.175 4.175 14 C 0.169 3.831 15 N -1.116 6.116 16 S 2.614 3.386 17 O -0.996 6.996 18 O -1.001 7.001 19 C -0.605 4.605 20 C -0.120 4.120 21 C -0.078 4.078 22 C -0.167 4.167 23 C -0.188 4.188 24 C -0.181 4.181 25 C -0.054 4.054 26 C -0.210 4.210 27 H 0.272 0.728 28 H 0.121 0.879 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.420 0.580 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.141 0.859 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.855 -20.835 0.963 30.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.171 1.171 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.123 0.877 9 O -0.140 6.140 10 C 0.067 3.933 11 C -0.265 4.265 12 C -0.064 4.064 13 C -0.177 4.177 14 C 0.045 3.955 15 N -0.876 5.876 16 S 2.712 3.288 17 O -0.986 6.986 18 O -0.991 6.991 19 C -0.738 4.738 20 C -0.160 4.160 21 C -0.117 4.117 22 C -0.186 4.186 23 C -0.225 4.225 24 C -0.218 4.218 25 C -0.073 4.073 26 C -0.230 4.230 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.172 0.828 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.254 0.746 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.158 0.842 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.962 -21.422 1.355 30.709 hybrid contribution -0.097 1.573 0.020 1.576 sum 21.865 -19.848 1.375 29.563 Atomic orbital electron populations 1.70196 1.08119 1.28737 1.48870 1.26622 0.96838 1.02863 0.95881 0.84508 0.78380 0.74756 0.78430 1.17133 1.19448 1.19602 1.21899 0.92634 0.81298 1.53004 0.87700 1.83950 1.36228 1.12745 1.81078 1.20004 0.91939 0.87763 0.93605 1.21306 0.92789 1.00457 1.11909 1.21060 1.00381 0.90266 0.94676 1.19603 0.93179 0.95002 1.09925 1.20204 0.99987 0.94678 0.80665 1.55555 1.83400 1.32872 1.15738 1.04625 0.77978 0.72656 0.73522 1.93550 1.61573 1.64246 1.79215 1.93551 1.88322 1.85946 1.31317 1.30426 1.20156 1.07307 1.15903 1.21432 0.98530 0.93642 1.02352 1.21129 0.94153 0.95140 1.01257 1.22462 0.91160 0.99539 1.05411 1.23147 1.01468 1.03515 0.94361 1.23047 1.00299 1.02679 0.95789 1.20956 0.93952 0.96701 0.95668 1.20443 0.99896 0.90765 1.11850 0.91886 0.86078 0.82781 0.87466 0.89506 0.74573 0.82329 0.82042 0.90505 0.90080 0.90083 0.90653 0.87717 0.88407 0.88713 0.88484 0.88260 0.84170 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.20 13.67 21.61 0.30 -55.90 16 2 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 3 Si 1.02 42.00 29.55 68.60 2.03 44.03 16 4 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.41 -23.49 9.49 67.92 0.64 -22.85 16 8 H 0.11 5.40 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -13.86 9.76 -22.80 -0.22 -14.09 16 10 C 0.12 5.67 6.65 22.58 0.15 5.82 16 11 C -0.25 -9.85 9.17 22.39 0.21 -9.64 16 12 C -0.05 -1.32 9.69 22.25 0.22 -1.10 16 13 C -0.17 -4.67 5.28 -19.83 -0.10 -4.78 16 14 C 0.17 2.95 6.25 85.64 0.54 3.48 16 15 N -1.12 -19.64 5.88 -190.78 -1.12 -20.76 16 16 S 2.61 46.57 5.46 -56.49 -0.31 46.26 16 17 O -1.00 -24.92 17.50 -127.65 -2.23 -27.15 16 18 O -1.00 -25.67 18.08 -127.65 -2.31 -27.98 16 19 C -0.60 -4.91 6.07 71.98 0.44 -4.47 16 20 C -0.12 -1.20 5.18 30.59 0.16 -1.04 16 21 C -0.08 -0.64 5.50 30.59 0.17 -0.47 16 22 C -0.17 -1.61 5.73 -10.80 -0.06 -1.68 16 23 C -0.19 -1.77 10.18 30.62 0.31 -1.45 16 24 C -0.18 -1.59 10.25 30.62 0.31 -1.28 16 25 C -0.05 -1.74 9.69 22.25 0.22 -1.52 16 26 C -0.21 -8.77 9.99 22.39 0.22 -8.54 16 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 29 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 30 H 0.11 1.01 8.08 -2.38 -0.02 0.99 16 31 H 0.09 1.48 7.63 -2.38 -0.02 1.46 16 32 H 0.42 7.82 8.61 -96.75 -0.83 6.99 16 33 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.07 0.53 7.87 -2.39 -0.02 0.51 16 39 H 0.10 1.02 8.08 -2.39 -0.02 1.00 16 40 H 0.10 0.84 8.03 -2.39 -0.02 0.82 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 45 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -81.38 392.60 0.17 -81.20 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.17 Total: 24.82 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 3.88 Total: -50.43 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -0.83 Total: -76.66 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -4.76 Total: -69.22 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 46.57 SS G_CDS: -0.31 Total: 46.26 kcal Total: -81.38 0.17 -81.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.613 kcal (2) G-P(sol) polarization free energy of solvation -81.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds