Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99690 * 3 2 1 6 6 H 1.48498 * 109.47360 * 59.99443 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38233 * 120.00109 * 269.72485 * 10 9 7 12 12 C 1.38239 * 119.99759 * 179.74218 * 11 10 9 13 13 C 1.38234 * 119.99962 * 0.55517 * 12 11 10 14 14 S 1.76199 * 120.00018 * 179.71951 * 13 12 11 15 15 O 1.42102 * 106.39930 * 23.52299 * 14 13 12 16 16 O 1.42109 * 106.40165 * 156.43872 * 14 13 12 17 17 N 1.65596 * 107.22174 * 269.97659 * 14 13 12 18 18 C 1.46506 * 119.99651 * 65.00135 * 17 14 13 19 19 H 1.09003 * 109.46897 * 334.99718 * 18 17 14 20 20 C 1.52991 * 109.47074 * 94.99773 * 18 17 14 21 21 O 1.42906 * 109.47154 * 64.99990 * 20 18 17 22 22 C 1.52999 * 109.46972 * 215.00014 * 18 17 14 23 23 C 1.53009 * 109.47170 * 65.00002 * 22 18 17 24 24 C 1.52998 * 117.49878 * 243.62231 * 23 22 18 25 25 C 1.52995 * 117.49755 * 175.00028 * 23 22 18 26 26 C 1.38238 * 120.00082 * 359.69846 * 13 12 11 27 27 C 1.38235 * 120.00108 * 0.02562 * 26 13 12 28 28 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 30 30 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 31 31 H 1.08004 * 119.99934 * 0.02562 * 11 10 9 32 32 H 1.07999 * 119.99953 * 180.27297 * 12 11 10 33 33 H 0.96996 * 120.00240 * 244.99968 * 17 14 13 34 34 H 1.08999 * 109.47176 * 184.99578 * 20 18 17 35 35 H 1.08996 * 109.47604 * 304.99799 * 20 18 17 36 36 H 0.96699 * 114.00253 * 179.97438 * 21 20 18 37 37 H 1.09001 * 109.47215 * 184.99708 * 22 18 17 38 38 H 1.08998 * 109.47071 * 305.00056 * 22 18 17 39 39 H 1.09002 * 115.54755 * 29.32683 * 23 22 18 40 40 H 1.09000 * 117.49784 * 359.97438 * 24 23 22 41 41 H 1.08996 * 117.49752 * 145.01897 * 24 23 22 42 42 H 1.09000 * 117.49581 * 214.98193 * 25 23 22 43 43 H 1.08999 * 117.50017 * 359.97438 * 25 23 22 44 44 H 1.08000 * 120.00578 * 179.97438 * 26 13 12 45 45 H 1.07999 * 120.00165 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6751 -4.1737 -1.1966 12 6 3.5775 -5.2209 -1.1965 13 6 4.0263 -5.7465 0.0006 14 16 5.1709 -7.0862 0.0007 15 8 5.8453 -7.0376 -1.2491 16 8 5.8456 -7.0374 1.2505 17 7 4.2868 -8.4864 0.0011 18 6 3.4422 -8.8196 -1.1487 19 1 3.1641 -7.9050 -1.6724 20 6 4.2136 -9.7372 -2.0992 21 8 4.4769 -10.9827 -1.4499 22 6 2.1790 -9.5337 -0.6636 23 6 1.3448 -8.5733 0.1866 24 6 1.1389 -8.9308 1.6599 25 6 -0.0212 -9.0633 0.6712 26 6 3.5775 -5.2208 1.1978 27 6 2.6795 -4.1699 1.1978 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8904 31 1 2.3211 -3.7659 -2.1319 32 1 3.9285 -5.6314 -2.1318 33 1 4.3281 -9.0859 0.7625 34 1 3.6196 -9.9135 -2.9960 35 1 5.1564 -9.2648 -2.3750 36 1 4.9640 -11.6154 -1.9954 37 1 1.5934 -9.8602 -1.5231 38 1 2.4588 -10.4000 -0.0643 39 1 1.4399 -7.5174 -0.0669 40 1 1.5974 -9.8505 2.0234 41 1 1.0986 -8.1102 2.3761 42 1 -0.8247 -8.3297 0.7369 43 1 -0.3258 -10.0697 0.3840 44 1 3.9277 -5.6317 2.1332 45 1 2.3285 -3.7595 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885075204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = -92.548566 kcal Electronic energy + Delta-G solvation = -27797.342115 eV Core-core repulsion = 23906.879242 eV Total energy + Delta-G solvation = -3890.462873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.90087 -38.67414 -37.14688 -36.88035 -35.73701 -34.85752 -33.69255 -31.57352 -30.60037 -30.14764 -27.44802 -26.90039 -23.74317 -22.45670 -22.41181 -21.73513 -20.93346 -20.68275 -19.47844 -18.04684 -17.47133 -17.14794 -16.66200 -16.45761 -15.49306 -15.23396 -15.03975 -14.81622 -14.55259 -14.38801 -14.29639 -13.80888 -13.54951 -13.45683 -13.12740 -12.85360 -12.55681 -12.25806 -12.01247 -11.91240 -11.80704 -11.72766 -11.64441 -11.55652 -11.50678 -11.27670 -10.95110 -10.94209 -10.58215 -10.50756 -10.45644 -10.13839 -10.02477 -9.77213 -9.68561 -9.50939 -8.60818 -8.55718 -8.39757 -6.18858 -4.23813 0.53078 1.31608 1.77466 3.07492 3.22055 3.30246 3.35504 3.70554 3.78114 3.99283 4.10474 4.30754 4.36311 4.47453 4.69197 4.84521 4.92579 4.95014 5.04178 5.13952 5.18775 5.21902 5.24199 5.31829 5.44583 5.56192 5.63609 5.70404 5.73560 5.80190 5.85761 5.89346 5.99660 6.06472 6.22988 6.25788 6.31178 6.49288 6.82055 6.88346 6.93381 7.27391 7.35576 7.41153 7.57097 7.76481 8.11539 8.81310 9.41407 10.91190 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003197 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.121000 B = 8755.133002 C = 9668.711766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.145 4.145 12 C -0.028 4.028 13 C -0.702 4.702 14 S 2.695 3.305 15 O -0.967 6.967 16 O -0.967 6.967 17 N -1.104 6.104 18 C 0.162 3.838 19 H 0.098 0.902 20 C 0.055 3.945 21 O -0.568 6.568 22 C -0.087 4.087 23 C -0.153 4.153 24 C -0.179 4.179 25 C -0.182 4.182 26 C -0.018 4.018 27 C -0.145 4.145 28 H 0.263 0.737 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.419 0.581 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.377 0.623 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 -22.196 -2.496 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.047 4.047 13 C -0.792 4.792 14 S 2.788 3.212 15 O -0.957 6.957 16 O -0.957 6.957 17 N -0.862 5.862 18 C 0.054 3.946 19 H 0.116 0.884 20 C -0.025 4.025 21 O -0.373 6.373 22 C -0.125 4.125 23 C -0.172 4.172 24 C -0.216 4.216 25 C -0.219 4.219 26 C -0.038 4.038 27 C -0.164 4.164 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.224 0.776 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.064 -21.611 -2.168 22.097 hybrid contribution -0.042 0.984 -0.139 0.994 sum 4.023 -20.628 -2.307 21.142 Atomic orbital electron populations 1.69957 1.06065 1.27021 1.49925 1.25003 0.94928 0.99407 0.94812 0.86430 0.80162 0.83109 0.77757 1.19561 1.20790 1.20799 1.21010 0.93140 0.89463 1.51884 0.92237 1.18540 0.92646 0.89575 0.98989 1.21104 0.92191 0.91981 0.92043 1.21232 0.99113 0.97185 0.98848 1.20770 0.93447 0.94878 0.95619 1.30330 1.25113 1.23862 0.99874 1.01648 0.73494 0.72721 0.73383 1.93549 1.71023 1.86635 1.44512 1.93565 1.71708 1.86535 1.43919 1.55494 1.63891 1.39000 1.27837 1.20854 0.89991 0.97860 0.85894 0.88422 1.22822 0.99906 0.85270 0.94483 1.86451 1.79396 1.26317 1.45099 1.21365 0.93683 0.97631 0.99870 1.22355 0.98221 1.00335 0.96243 1.23011 1.02809 1.03093 0.92650 1.22938 0.91970 1.02351 1.04605 1.20749 0.92965 0.94340 0.95748 1.21242 0.99125 0.97176 0.98856 0.92683 0.94749 0.94759 0.85407 0.85385 0.74603 0.92662 0.91823 0.77610 0.90476 0.90144 0.87409 0.88955 0.88831 0.88844 0.89076 0.85332 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.92 9.09 -34.44 -0.31 -14.24 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.04 0.95 5.11 -29.03 -0.15 0.80 16 10 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 11 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 12 C -0.03 -0.43 8.90 -39.58 -0.35 -0.78 16 13 C -0.70 -10.68 5.82 -39.58 -0.23 -10.91 16 14 S 2.70 37.06 5.65 -107.50 -0.61 36.45 16 15 O -0.97 -15.11 16.49 -57.17 -0.94 -16.05 16 16 O -0.97 -15.88 17.28 -57.17 -0.99 -16.87 16 17 N -1.10 -11.29 5.14 -4.89 -0.03 -11.31 16 18 C 0.16 1.46 2.53 -67.93 -0.17 1.29 16 19 H 0.10 0.86 7.23 -51.93 -0.38 0.48 16 20 C 0.05 0.44 6.88 37.15 0.26 0.70 16 21 O -0.57 -4.37 12.83 -35.23 -0.45 -4.82 16 22 C -0.09 -0.71 4.81 -26.73 -0.13 -0.84 16 23 C -0.15 -1.47 5.47 -90.62 -0.50 -1.96 16 24 C -0.18 -1.67 10.18 -26.73 -0.27 -1.94 16 25 C -0.18 -1.65 10.25 -26.73 -0.27 -1.93 16 26 C -0.02 -0.30 9.52 -39.58 -0.38 -0.67 16 27 C -0.15 -2.64 9.70 -39.58 -0.38 -3.02 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 32 H 0.13 1.67 7.62 -52.49 -0.40 1.27 16 33 H 0.42 3.79 8.84 -34.47 -0.30 3.49 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.59 7.59 -51.93 -0.39 0.19 16 36 H 0.38 1.42 9.12 45.56 0.42 1.83 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.68 7.46 -51.93 -0.39 0.29 16 39 H 0.11 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 45 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -33.27 390.65 -11.34 -44.61 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.02 Total: 5.63 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: -3.90 Total: -34.91 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.71 Total: -35.96 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -2.38 Total: -37.74 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 37.06 SS G_CDS: -0.61 Total: 36.45 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.27 -11.34 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885075204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.941 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds