Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47254 * 239.99725 * 3 2 1 5 5 H 1.48498 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47245 * 119.99906 * 3 2 1 7 7 C 1.37878 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00282 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99594 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46918 * 179.97438 * 9 7 2 11 11 C 1.38232 * 119.99741 * 89.99761 * 10 9 7 12 12 C 1.38235 * 119.99457 * 179.97438 * 11 10 9 13 13 C 1.38232 * 120.00588 * 0.02562 * 12 11 10 14 14 S 1.76196 * 120.00267 * 179.97438 * 13 12 11 15 15 O 1.42098 * 106.40346 * 336.45520 * 14 13 12 16 16 O 1.42105 * 106.40005 * 203.54331 * 14 13 12 17 17 N 1.65592 * 107.22072 * 90.00261 * 14 13 12 18 18 C 1.46504 * 120.00236 * 64.99358 * 17 14 13 19 19 H 1.09001 * 109.46891 * 335.00641 * 18 17 14 20 20 C 1.53006 * 109.46883 * 95.00207 * 18 17 14 21 21 C 1.52997 * 109.47127 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47060 * 300.00449 * 21 20 18 23 23 H 1.09001 * 109.47194 * 299.99650 * 22 21 20 24 24 O 1.42903 * 109.46726 * 180.02562 * 22 21 20 25 25 C 1.52996 * 109.47328 * 60.00126 * 22 21 20 26 26 C 1.52997 * 109.47417 * 215.00293 * 18 17 14 27 27 C 1.38241 * 119.99620 * 0.25690 * 13 12 11 28 28 C 1.38228 * 119.99668 * 270.02016 * 10 9 7 29 29 H 0.97001 * 119.99963 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46974 * 60.00157 * 9 7 2 31 31 H 1.09000 * 109.46573 * 299.99674 * 9 7 2 32 32 H 1.07999 * 120.00317 * 0.02562 * 11 10 9 33 33 H 1.08008 * 119.99675 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00302 * 245.00215 * 17 14 13 35 35 H 1.08998 * 109.46505 * 59.99948 * 20 18 17 36 36 H 1.08996 * 109.46884 * 300.00829 * 20 18 17 37 37 H 1.09002 * 109.47153 * 180.02562 * 21 20 18 38 38 H 1.09001 * 109.46832 * 60.00321 * 21 20 18 39 39 H 0.96700 * 113.99509 * 179.97438 * 24 22 21 40 40 H 1.08992 * 109.47554 * 59.99639 * 25 22 21 41 41 H 1.09004 * 109.47108 * 179.97438 * 25 22 21 42 42 H 1.09002 * 109.47045 * 60.00127 * 26 18 17 43 43 H 1.09001 * 109.47375 * 300.00052 * 26 18 17 44 44 H 1.07999 * 119.99652 * 179.72902 * 27 13 12 45 45 H 1.07997 * 120.00461 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6796 -4.1699 1.1977 12 6 3.5775 -5.2209 1.1976 13 6 4.0266 -5.7463 0.0005 14 16 5.1716 -7.0855 0.0005 15 8 5.8463 -7.0366 1.2502 16 8 5.8462 -7.0366 -1.2492 17 7 4.2880 -8.4860 0.0005 18 6 3.4436 -8.8194 -1.1493 19 1 3.1653 -7.9048 -1.6729 20 6 4.2154 -9.7367 -2.1000 21 6 3.3338 -10.0843 -3.3011 22 6 2.0705 -10.7986 -2.8166 23 1 2.3484 -11.7134 -2.2931 24 8 1.2474 -11.1239 -3.9386 25 6 1.2986 -9.8813 -1.8661 26 6 2.1806 -9.5339 -0.6644 27 6 3.5819 -5.2171 -1.1966 28 6 2.6798 -4.1696 -1.1966 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 2.3284 -3.7597 2.1330 33 1 3.9281 -5.6316 2.1330 34 1 4.3294 -9.0856 0.7619 35 1 4.4938 -10.6511 -1.5762 36 1 5.1152 -9.2276 -2.4453 37 1 3.8835 -10.7382 -3.9781 38 1 3.0559 -9.1696 -3.8246 39 1 0.4272 -11.5801 -3.7055 40 1 1.0207 -8.9666 -2.3895 41 1 0.3984 -10.3901 -1.5213 42 1 1.6307 -8.8804 0.0129 43 1 2.4589 -10.4485 -0.1407 44 1 3.9362 -5.6248 -2.1319 45 1 2.3288 -3.7593 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885075311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -129.104370 kcal Electronic energy + Delta-G solvation = -27399.130104 eV Core-core repulsion = 23507.082053 eV Total energy + Delta-G solvation = -3892.048051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.54023 -38.82834 -37.18524 -36.57534 -35.77768 -33.70399 -33.39199 -31.58402 -31.18144 -30.60895 -28.13982 -27.45468 -23.75096 -23.14584 -22.56333 -22.27023 -20.95343 -20.46922 -19.37509 -17.83967 -17.56216 -17.38471 -16.71020 -16.45283 -15.57089 -15.15963 -15.02979 -14.86852 -14.40654 -14.36351 -14.27601 -13.85495 -13.57440 -13.15190 -13.04151 -12.85867 -12.59861 -12.48754 -12.24096 -12.15015 -12.03457 -11.94433 -11.72691 -11.52388 -11.50482 -11.46700 -11.09819 -10.98584 -10.91849 -10.66151 -10.50016 -10.47912 -10.19252 -9.79961 -9.72008 -9.55558 -8.61870 -8.55109 -8.41388 -6.18584 -4.23802 0.47923 1.29686 1.76323 3.00458 3.25205 3.29422 3.32885 3.73247 3.85041 4.08605 4.27299 4.33189 4.36511 4.44021 4.69354 4.76921 4.80194 4.94508 5.06194 5.09354 5.12186 5.15418 5.20719 5.22535 5.42635 5.55870 5.67020 5.69625 5.74467 5.77975 5.81808 5.88428 5.88495 5.99077 6.09906 6.22032 6.29971 6.47788 6.78505 6.81411 6.88465 7.26743 7.31780 7.40442 7.56630 7.76244 8.11399 8.80720 9.41268 10.91407 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.002890 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.533273 B = 9686.880453 C =10853.810073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.040 3.960 10 C 0.027 3.973 11 C -0.145 4.145 12 C -0.022 4.022 13 C -0.704 4.704 14 S 2.696 3.304 15 O -0.967 6.967 16 O -0.962 6.962 17 N -1.116 6.116 18 C 0.153 3.847 19 H 0.089 0.911 20 C -0.136 4.136 21 C -0.112 4.112 22 C 0.103 3.897 23 H 0.055 0.945 24 O -0.568 6.568 25 C -0.151 4.151 26 C -0.122 4.122 27 C -0.026 4.026 28 C -0.145 4.145 29 H 0.265 0.735 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.416 0.584 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.377 0.623 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -23.486 -2.103 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.041 4.041 13 C -0.794 4.794 14 S 2.789 3.211 15 O -0.957 6.957 16 O -0.952 6.952 17 N -0.873 5.873 18 C 0.045 3.955 19 H 0.107 0.893 20 C -0.175 4.175 21 C -0.150 4.150 22 C 0.044 3.956 23 H 0.073 0.927 24 O -0.374 6.374 25 C -0.190 4.190 26 C -0.161 4.161 27 C -0.046 4.046 28 C -0.164 4.164 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.224 0.776 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.220 -22.891 -2.575 23.419 hybrid contribution -0.779 0.887 0.749 1.398 sum 3.441 -22.004 -1.826 22.346 Atomic orbital electron populations 1.69933 1.06074 1.27263 1.49707 1.24998 0.94930 0.99388 0.94769 0.86535 0.79519 0.82408 0.78906 1.20016 1.21091 1.20032 1.20932 0.93072 0.89479 1.52211 0.92334 1.18536 0.92638 0.89510 0.99025 1.21121 0.92181 0.91974 0.92047 1.21251 0.99102 0.97179 0.98904 1.20766 0.93107 0.94513 0.95732 1.30314 1.25243 1.23906 0.99913 1.01643 0.73408 0.72685 0.73403 1.93566 1.71629 1.86522 1.44016 1.93563 1.70827 1.86461 1.44329 1.55689 1.64409 1.39446 1.27746 1.20825 0.89873 0.99174 0.85580 0.89293 1.22067 0.99391 1.00337 0.95713 1.21456 0.94357 1.01312 0.97909 1.21882 0.90913 0.96392 0.86405 0.92727 1.86532 1.36163 1.80737 1.33959 1.22267 0.98647 1.01446 0.96637 1.21787 0.95365 1.01034 0.97949 1.20797 0.93350 0.94739 0.95685 1.21249 0.99036 0.97180 0.98902 0.92551 0.94713 0.94725 0.85343 0.85280 0.75039 0.91142 0.89441 0.90792 0.90654 0.77610 0.90446 0.91209 0.90412 0.91075 0.85272 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.02 9.09 -34.44 -0.31 -14.33 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 10 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 11 C -0.15 -2.66 9.70 -39.58 -0.38 -3.05 16 12 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 13 C -0.70 -10.79 5.82 -39.58 -0.23 -11.02 16 14 S 2.70 35.98 5.65 -107.50 -0.61 35.38 16 15 O -0.97 -15.26 17.28 -57.17 -0.99 -16.25 16 16 O -0.96 -14.89 16.54 -57.17 -0.95 -15.83 16 17 N -1.12 -10.29 5.47 -4.89 -0.03 -10.32 16 18 C 0.15 1.32 2.65 -67.93 -0.18 1.14 16 19 H 0.09 0.84 7.25 -51.93 -0.38 0.46 16 20 C -0.14 -1.12 5.53 -26.73 -0.15 -1.27 16 21 C -0.11 -0.92 5.57 -26.73 -0.15 -1.07 16 22 C 0.10 0.74 3.47 -26.73 -0.09 0.65 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 24 O -0.57 -4.58 13.32 -35.23 -0.47 -5.04 16 25 C -0.15 -1.03 5.55 -26.71 -0.15 -1.18 16 26 C -0.12 -0.85 5.45 -26.71 -0.15 -0.99 16 27 C -0.03 -0.42 8.92 -39.58 -0.35 -0.77 16 28 C -0.14 -2.64 9.70 -39.58 -0.38 -3.02 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.13 1.78 7.62 -52.48 -0.40 1.38 16 34 H 0.42 2.85 8.84 -34.47 -0.30 2.54 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.85 7.64 -51.93 -0.40 0.45 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.38 1.48 9.08 45.56 0.41 1.90 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.13 1.75 7.61 -52.49 -0.40 1.35 16 45 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -33.70 380.52 -11.34 -45.04 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.07 Total: 3.14 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: -3.68 Total: -33.21 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.71 Total: -35.01 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -2.40 Total: -37.13 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 35.98 SS G_CDS: -0.61 Total: 35.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.70 -11.34 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885075311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.065 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds