Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47254 * 239.99725 * 3 2 1 5 5 H 1.48498 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47245 * 119.99906 * 3 2 1 7 7 C 1.37878 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00282 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99594 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46918 * 179.97438 * 9 7 2 11 11 C 1.38232 * 119.99741 * 89.99761 * 10 9 7 12 12 C 1.38235 * 119.99457 * 179.97438 * 11 10 9 13 13 C 1.38232 * 120.00588 * 0.02562 * 12 11 10 14 14 S 1.76196 * 120.00267 * 179.97438 * 13 12 11 15 15 O 1.42098 * 106.40346 * 336.45520 * 14 13 12 16 16 O 1.42105 * 106.40005 * 203.54331 * 14 13 12 17 17 N 1.65592 * 107.22072 * 90.00261 * 14 13 12 18 18 C 1.46504 * 120.00236 * 64.99358 * 17 14 13 19 19 H 1.09001 * 109.46891 * 335.00641 * 18 17 14 20 20 C 1.53006 * 109.46883 * 95.00207 * 18 17 14 21 21 C 1.52997 * 109.47127 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47060 * 300.00449 * 21 20 18 23 23 H 1.09001 * 109.47194 * 299.99650 * 22 21 20 24 24 O 1.42903 * 109.46726 * 180.02562 * 22 21 20 25 25 C 1.52996 * 109.47328 * 60.00126 * 22 21 20 26 26 C 1.52997 * 109.47417 * 215.00293 * 18 17 14 27 27 C 1.38241 * 119.99620 * 0.25690 * 13 12 11 28 28 C 1.38228 * 119.99668 * 270.02016 * 10 9 7 29 29 H 0.97001 * 119.99963 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46974 * 60.00157 * 9 7 2 31 31 H 1.09000 * 109.46573 * 299.99674 * 9 7 2 32 32 H 1.07999 * 120.00317 * 0.02562 * 11 10 9 33 33 H 1.08008 * 119.99675 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00302 * 245.00215 * 17 14 13 35 35 H 1.08998 * 109.46505 * 59.99948 * 20 18 17 36 36 H 1.08996 * 109.46884 * 300.00829 * 20 18 17 37 37 H 1.09002 * 109.47153 * 180.02562 * 21 20 18 38 38 H 1.09001 * 109.46832 * 60.00321 * 21 20 18 39 39 H 0.96700 * 113.99509 * 179.97438 * 24 22 21 40 40 H 1.08992 * 109.47554 * 59.99639 * 25 22 21 41 41 H 1.09004 * 109.47108 * 179.97438 * 25 22 21 42 42 H 1.09002 * 109.47045 * 60.00127 * 26 18 17 43 43 H 1.09001 * 109.47375 * 300.00052 * 26 18 17 44 44 H 1.07999 * 119.99652 * 179.72902 * 27 13 12 45 45 H 1.07997 * 120.00461 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6796 -4.1699 1.1977 12 6 3.5775 -5.2209 1.1976 13 6 4.0266 -5.7463 0.0005 14 16 5.1716 -7.0855 0.0005 15 8 5.8463 -7.0366 1.2502 16 8 5.8462 -7.0366 -1.2492 17 7 4.2880 -8.4860 0.0005 18 6 3.4436 -8.8194 -1.1493 19 1 3.1653 -7.9048 -1.6729 20 6 4.2154 -9.7367 -2.1000 21 6 3.3338 -10.0843 -3.3011 22 6 2.0705 -10.7986 -2.8166 23 1 2.3484 -11.7134 -2.2931 24 8 1.2474 -11.1239 -3.9386 25 6 1.2986 -9.8813 -1.8661 26 6 2.1806 -9.5339 -0.6644 27 6 3.5819 -5.2171 -1.1966 28 6 2.6798 -4.1696 -1.1966 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 2.3284 -3.7597 2.1330 33 1 3.9281 -5.6316 2.1330 34 1 4.3294 -9.0856 0.7619 35 1 4.4938 -10.6511 -1.5762 36 1 5.1152 -9.2276 -2.4453 37 1 3.8835 -10.7382 -3.9781 38 1 3.0559 -9.1696 -3.8246 39 1 0.4272 -11.5801 -3.7055 40 1 1.0207 -8.9666 -2.3895 41 1 0.3984 -10.3901 -1.5213 42 1 1.6307 -8.8804 0.0129 43 1 2.4589 -10.4485 -0.1407 44 1 3.9362 -5.6248 -2.1319 45 1 2.3288 -3.7593 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885075311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -153.651455 kcal Electronic energy + Delta-G solvation = -27400.194545 eV Core-core repulsion = 23507.082053 eV Total energy + Delta-G solvation = -3893.112493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.28058 -40.11140 -38.33252 -37.24232 -36.96154 -35.60758 -34.11261 -33.33037 -31.97658 -31.76084 -29.25829 -28.80584 -25.60398 -23.78797 -23.72808 -23.05597 -22.49130 -21.16126 -20.40033 -18.97158 -18.59929 -18.40622 -18.11519 -17.57032 -16.86320 -16.61749 -16.02894 -15.97596 -15.50663 -15.43347 -15.26842 -14.86256 -14.62976 -14.46919 -14.30981 -13.94262 -13.69451 -13.41904 -13.40107 -13.32667 -13.25606 -13.15827 -13.09685 -12.80073 -12.68400 -12.66451 -12.23953 -12.08029 -12.05994 -12.04461 -11.73600 -11.70205 -11.47475 -11.16432 -10.75270 -10.65972 -10.37429 -9.97386 -9.96032 -8.27998 -6.40896 -0.62741 -0.07623 0.38281 1.37974 1.39425 1.47932 1.98940 2.33955 2.55514 2.81342 3.04659 3.31000 3.36357 3.66622 3.75466 3.86340 3.95681 4.09152 4.14736 4.18128 4.19778 4.32191 4.43133 4.46459 4.47537 4.53689 4.55648 4.80372 4.84150 4.89761 5.00701 5.09044 5.12975 5.15894 5.22584 5.23403 5.24915 5.26270 5.32241 5.37878 5.49470 5.65954 5.85240 5.91161 6.08762 6.13556 6.70706 6.96318 7.28242 8.81877 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.002890 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.533273 B = 9686.880453 C =10853.810073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.002 4.002 11 C -0.155 4.155 12 C -0.018 4.018 13 C -0.701 4.701 14 S 2.723 3.277 15 O -0.986 6.986 16 O -0.980 6.980 17 N -1.096 6.096 18 C 0.144 3.856 19 H 0.079 0.921 20 C -0.132 4.132 21 C -0.115 4.115 22 C 0.104 3.896 23 H 0.073 0.927 24 O -0.589 6.589 25 C -0.149 4.149 26 C -0.118 4.118 27 C -0.021 4.021 28 C -0.154 4.154 29 H 0.268 0.732 30 H 0.013 0.987 31 H 0.014 0.986 32 H 0.130 0.870 33 H 0.156 0.844 34 H 0.431 0.569 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.394 0.606 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.154 0.846 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 -25.495 -1.658 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.012 3.988 10 C -0.003 4.003 11 C -0.174 4.174 12 C -0.037 4.037 13 C -0.787 4.787 14 S 2.813 3.187 15 O -0.976 6.976 16 O -0.969 6.969 17 N -0.858 5.858 18 C 0.038 3.962 19 H 0.097 0.903 20 C -0.171 4.171 21 C -0.153 4.153 22 C 0.046 3.954 23 H 0.091 0.909 24 O -0.398 6.398 25 C -0.187 4.187 26 C -0.157 4.157 27 C -0.040 4.040 28 C -0.173 4.173 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.148 0.852 33 H 0.174 0.826 34 H 0.268 0.732 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.243 0.757 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.171 0.829 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.397 -24.896 -2.116 25.562 hybrid contribution -1.142 1.348 0.572 1.857 sum 4.255 -23.548 -1.543 23.979 Atomic orbital electron populations 1.70043 1.07520 1.28231 1.50623 1.25853 0.95762 1.02927 0.94314 0.85528 0.78365 0.78232 0.79138 1.19396 1.20349 1.19365 1.21269 0.93065 0.91073 1.51952 0.92823 1.18259 0.92982 0.90716 0.96871 1.20809 0.93258 0.92275 0.93924 1.21309 0.99839 0.98024 0.98184 1.21024 0.92011 0.93425 0.97218 1.30808 1.24272 1.24252 0.99410 1.00873 0.72821 0.72633 0.72411 1.93540 1.72282 1.86940 1.44858 1.93547 1.71363 1.86840 1.45189 1.55288 1.64014 1.37852 1.28672 1.21010 0.90648 0.99249 0.85327 0.90318 1.22018 0.98597 1.00847 0.95676 1.21463 0.95149 1.00835 0.97865 1.21887 0.90307 0.96980 0.86231 0.90931 1.86489 1.37335 1.81164 1.34801 1.22244 0.99303 1.00819 0.96361 1.21777 0.94213 1.01737 0.98003 1.21024 0.92257 0.93618 0.97123 1.21293 0.99807 0.98042 0.98177 0.92345 0.96867 0.96813 0.85235 0.82616 0.73153 0.89192 0.91008 0.90792 0.92179 0.75660 0.92195 0.89473 0.90667 0.88813 0.82889 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 13.29 21.45 0.28 -53.87 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -29.85 9.09 25.60 0.23 -29.61 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.05 2.49 5.10 29.11 0.15 2.63 16 10 C 0.00 -0.10 5.07 -19.87 -0.10 -0.20 16 11 C -0.15 -5.70 9.70 22.27 0.22 -5.48 16 12 C -0.02 -0.54 9.52 22.27 0.21 -0.33 16 13 C -0.70 -20.33 5.82 22.27 0.13 -20.20 16 14 S 2.72 66.53 5.65 -56.49 -0.32 66.21 16 15 O -0.99 -28.62 17.28 -128.00 -2.21 -30.83 16 16 O -0.98 -28.42 16.54 -128.00 -2.12 -30.53 16 17 N -1.10 -17.15 5.47 -169.37 -0.93 -18.07 16 18 C 0.14 2.17 2.65 44.99 0.12 2.29 16 19 H 0.08 1.37 7.25 -2.39 -0.02 1.35 16 20 C -0.13 -1.89 5.53 30.60 0.17 -1.73 16 21 C -0.11 -1.72 5.57 30.59 0.17 -1.55 16 22 C 0.10 1.27 3.47 30.59 0.11 1.37 16 23 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 24 O -0.59 -8.49 13.32 -148.98 -1.98 -10.48 16 25 C -0.15 -1.69 5.55 30.61 0.17 -1.52 16 26 C -0.12 -1.30 5.45 30.61 0.17 -1.13 16 27 C -0.02 -0.65 8.92 22.27 0.20 -0.45 16 28 C -0.15 -5.71 9.70 22.27 0.22 -5.50 16 29 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.01 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.01 0.73 8.09 -2.39 -0.02 0.71 16 32 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.16 3.90 7.62 -2.91 -0.02 3.88 16 34 H 0.43 4.37 8.84 -96.75 -0.85 3.51 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.28 7.64 -2.39 -0.02 1.26 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.39 2.33 9.08 -74.06 -0.67 1.65 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.70 8.14 -2.38 -0.02 0.69 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.15 3.93 7.61 -2.91 -0.02 3.91 16 45 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -73.10 380.52 -3.15 -76.26 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.52 Total: 16.05 kcal Atomic # 6 Polarization: -62.96 SS G_CDS: 2.62 Total: -60.35 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -0.64 Total: -71.94 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -6.31 Total: -71.84 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 66.53 SS G_CDS: -0.32 Total: 66.21 kcal Total: -73.10 -3.15 -76.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885075311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.396 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds