Wall clock time and date at job start Sat Apr 11 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48503 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47320 * 300.00553 * 3 2 1 6 6 H 1.48500 * 109.47351 * 60.00381 * 3 2 1 7 7 C 1.37878 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99690 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47261 * 180.02562 * 9 7 2 11 11 C 1.38229 * 120.00230 * 270.27992 * 10 9 7 12 12 C 1.38238 * 120.00124 * 180.28369 * 11 10 9 13 13 C 1.38234 * 119.99675 * 359.45911 * 12 11 10 14 14 S 1.76201 * 120.00103 * 180.27958 * 13 12 11 15 15 O 1.42095 * 106.40682 * 203.54258 * 14 13 12 16 16 O 1.42098 * 106.40259 * 336.46585 * 14 13 12 17 17 N 1.65604 * 107.21824 * 90.00267 * 14 13 12 18 18 C 1.46509 * 119.99844 * 64.99985 * 17 14 13 19 19 C 1.52990 * 109.47003 * 165.00356 * 18 17 14 20 20 C 1.52998 * 109.47345 * 180.02562 * 19 18 17 21 21 H 1.09009 * 110.80030 * 305.69831 * 20 19 18 22 22 C 1.54808 * 110.91068 * 182.07397 * 20 19 18 23 23 C 1.54102 * 104.18588 * 220.91877 * 22 20 19 24 24 O 1.43745 * 107.29599 * 357.96722 * 23 22 20 25 25 C 1.44423 * 106.99728 * 26.48985 * 24 23 22 26 26 C 1.38234 * 120.00240 * 0.26327 * 13 12 11 27 27 C 1.38234 * 119.99755 * 90.00358 * 10 9 7 28 28 H 0.97003 * 120.00412 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46663 * 60.00529 * 9 7 2 30 30 H 1.08998 * 109.47798 * 300.00968 * 9 7 2 31 31 H 1.08004 * 120.00244 * 0.02562 * 11 10 9 32 32 H 1.08002 * 120.00519 * 179.74530 * 12 11 10 33 33 H 0.96997 * 120.00257 * 245.00412 * 17 14 13 34 34 H 1.08999 * 109.46851 * 285.00010 * 18 17 14 35 35 H 1.08993 * 109.46673 * 45.00244 * 18 17 14 36 36 H 1.09004 * 109.47123 * 300.00027 * 19 18 17 37 37 H 1.09000 * 109.47553 * 59.99967 * 19 18 17 38 38 H 1.08995 * 110.48852 * 339.59301 * 22 20 19 39 39 H 1.08994 * 110.49134 * 102.24436 * 22 20 19 40 40 H 1.08997 * 109.88194 * 117.39381 * 23 22 20 41 41 H 1.09002 * 109.87927 * 238.39587 * 23 22 20 42 42 H 1.09001 * 110.65267 * 201.48202 * 25 24 23 43 43 H 1.08996 * 110.60533 * 78.47413 * 25 24 23 44 44 H 1.07997 * 120.00460 * 180.02562 * 26 13 12 45 45 H 1.08001 * 120.00274 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6841 -4.1661 -1.1976 12 6 3.5779 -5.2206 -1.1976 13 6 4.0267 -5.7462 -0.0004 14 16 5.1716 -7.0855 -0.0003 15 8 5.0182 -7.7446 1.2491 16 8 5.0191 -7.7439 -1.2502 17 7 6.6925 -6.4302 0.0004 18 6 7.1527 -5.6481 1.1506 19 6 8.6715 -5.4794 1.0778 20 6 9.1522 -4.6633 2.2794 21 1 8.6154 -3.7167 2.3441 22 6 10.6808 -4.4280 2.2116 23 6 11.1570 -4.6182 3.6648 24 8 9.9923 -4.8813 4.4652 25 6 9.0054 -5.4733 3.5927 26 6 3.5775 -5.2209 1.1967 27 6 2.6795 -4.1698 1.1966 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8895 31 1 2.3370 -3.7524 -2.1330 32 1 3.9292 -5.6308 -2.1329 33 1 7.2787 -6.5641 -0.7608 34 1 6.6771 -4.6675 1.1368 35 1 6.8885 -6.1672 2.0719 36 1 9.1471 -6.4601 1.0916 37 1 8.9357 -4.9604 0.1565 38 1 11.1510 -5.1616 1.5569 39 1 10.8962 -3.4160 1.8690 40 1 11.8445 -5.4620 3.7221 41 1 11.6525 -3.7123 4.0140 42 1 8.0045 -5.3538 4.0074 43 1 9.2275 -6.5264 3.4209 44 1 3.9284 -5.6312 2.1320 45 1 2.3282 -3.7597 2.1320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885102397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:40 Heat of formation + Delta-G solvation = -117.634421 kcal Electronic energy + Delta-G solvation = -26786.238725 eV Core-core repulsion = 22894.688048 eV Total energy + Delta-G solvation = -3891.550677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83112 -38.83064 -37.21777 -36.38449 -35.80017 -33.71192 -33.32783 -31.58815 -30.60496 -30.32865 -27.64065 -27.46119 -23.98867 -23.75384 -22.46636 -22.26578 -21.01365 -20.80474 -19.41001 -17.90621 -17.37012 -16.97429 -16.48701 -16.21156 -15.94227 -15.74828 -15.23257 -15.03623 -14.80427 -14.39857 -14.34552 -13.95265 -13.76203 -13.32543 -13.13825 -12.89845 -12.68424 -12.48809 -12.24609 -12.09913 -12.01182 -11.96561 -11.84666 -11.78745 -11.51714 -11.24953 -11.10776 -10.96350 -10.95180 -10.88865 -10.55076 -10.51781 -9.99677 -9.87271 -9.69068 -9.58549 -8.62178 -8.57405 -8.41130 -6.20312 -4.25637 0.47588 1.30034 1.76763 3.02151 3.19495 3.27676 3.31193 3.60014 3.72649 4.07165 4.09904 4.30100 4.33844 4.43276 4.53278 4.65825 4.72792 4.85648 4.92929 5.09681 5.13584 5.19061 5.20746 5.27383 5.34244 5.34582 5.43499 5.46665 5.60063 5.65384 5.69728 5.75390 5.82952 5.88501 5.89604 6.22167 6.30161 6.47838 6.53116 6.77750 6.81379 6.88601 7.27032 7.40819 7.56755 7.74317 8.09748 8.79123 9.39280 10.89817 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008681 B = 0.003212 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.813352 B = 8715.668170 C =11133.055900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.022 4.022 13 C -0.705 4.705 14 S 2.699 3.301 15 O -0.965 6.965 16 O -0.967 6.967 17 N -1.120 6.120 18 C 0.112 3.888 19 C -0.115 4.115 20 C -0.123 4.123 21 H 0.093 0.907 22 C -0.152 4.152 23 C 0.046 3.954 24 O -0.379 6.379 25 C 0.046 3.954 26 C -0.025 4.025 27 C -0.145 4.145 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.416 0.584 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.424 -11.119 2.276 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.001 3.999 10 C 0.027 3.973 11 C -0.165 4.165 12 C -0.041 4.041 13 C -0.794 4.794 14 S 2.792 3.208 15 O -0.955 6.955 16 O -0.957 6.957 17 N -0.879 5.879 18 C -0.014 4.014 19 C -0.154 4.154 20 C -0.142 4.142 21 H 0.112 0.888 22 C -0.190 4.190 23 C -0.031 4.031 24 O -0.298 6.298 25 C -0.030 4.030 26 C -0.045 4.045 27 C -0.164 4.164 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.250 0.750 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.938 -11.835 2.672 22.491 hybrid contribution 0.434 1.742 -0.646 1.908 sum 19.372 -10.093 2.027 21.937 Atomic orbital electron populations 1.69954 1.06084 1.27048 1.49774 1.25013 0.94923 0.99405 0.94850 0.86431 0.80022 0.83175 0.77794 1.19649 1.20802 1.20774 1.20981 0.93042 0.89437 1.52018 0.92281 1.18552 0.92667 0.89548 0.99108 1.21120 0.91984 0.92163 0.92062 1.21252 0.99249 0.97053 0.98918 1.20769 0.94023 0.93595 0.95746 1.30305 1.23676 1.25529 0.99913 1.01501 0.72368 0.73635 0.73302 1.93554 1.85662 1.71793 1.44477 1.93565 1.85586 1.72646 1.43944 1.55550 1.33192 1.71177 1.28005 1.21375 0.95650 0.96112 0.88231 1.21733 0.94463 1.00788 0.98382 1.22749 0.96116 1.00273 0.95093 0.88829 1.22996 0.95333 1.03210 0.97415 1.23145 0.88917 1.00940 0.90113 1.88898 1.25140 1.82014 1.33709 1.23757 0.93519 0.96609 0.89141 1.20786 0.94252 0.93733 0.95699 1.21249 0.99174 0.97085 0.98894 0.92640 0.94684 0.94671 0.85343 0.85271 0.74993 0.91019 0.90102 0.90696 0.90466 0.90439 0.90252 0.92507 0.89928 0.88448 0.91794 0.85264 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.68 9.09 -34.44 -0.31 -13.99 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.92 5.10 -29.04 -0.15 0.77 16 10 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 11 C -0.15 -2.67 9.70 -39.58 -0.38 -3.05 16 12 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 13 C -0.70 -10.70 5.95 -39.58 -0.24 -10.93 16 14 S 2.70 35.45 5.74 -107.50 -0.62 34.83 16 15 O -0.96 -14.76 16.75 -57.17 -0.96 -15.72 16 16 O -0.97 -14.91 17.28 -57.17 -0.99 -15.90 16 17 N -1.12 -10.42 6.00 -10.61 -0.06 -10.48 16 18 C 0.11 0.95 6.10 -4.04 -0.02 0.92 16 19 C -0.11 -0.73 4.75 -26.74 -0.13 -0.86 16 20 C -0.12 -0.86 3.12 -88.61 -0.28 -1.13 16 21 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 22 C -0.15 -0.92 6.60 -25.20 -0.17 -1.09 16 23 C 0.05 0.33 7.70 37.73 0.29 0.62 16 24 O -0.38 -3.86 11.52 -35.23 -0.41 -4.26 16 25 C 0.05 0.37 6.49 38.21 0.25 0.62 16 26 C -0.03 -0.40 9.52 -39.58 -0.38 -0.77 16 27 C -0.15 -2.63 9.70 -39.58 -0.38 -3.01 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 32 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 33 H 0.42 2.93 8.65 -34.48 -0.30 2.63 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.68 7.19 -51.93 -0.37 0.31 16 36 H 0.07 0.42 8.05 -51.93 -0.42 0.01 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.39 7.86 -51.93 -0.41 -0.02 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.76 8.11 -51.93 -0.42 0.33 16 43 H 0.06 0.47 7.98 -51.93 -0.41 0.05 16 44 H 0.13 1.71 7.62 -52.49 -0.40 1.31 16 45 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -33.23 385.58 -11.30 -44.54 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.90 Total: 1.18 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -2.90 Total: -31.07 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.67 Total: -35.00 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -2.35 Total: -35.88 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 35.45 SS G_CDS: -0.62 Total: 34.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.23 -11.30 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.096 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds