Wall clock time and date at job start Sat Apr 11 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00000 * 2 1 4 4 H 1.48507 * 109.47115 * 270.00539 * 3 2 1 5 5 H 1.48497 * 109.47111 * 30.00280 * 3 2 1 6 6 H 1.48498 * 109.47308 * 150.00259 * 3 2 1 7 7 C 1.37877 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47392 * 180.02562 * 9 7 2 11 11 C 1.38230 * 119.99926 * 89.99896 * 10 9 7 12 12 C 1.38232 * 120.00164 * 179.97438 * 11 10 9 13 13 C 1.38239 * 119.99960 * 0.02562 * 12 11 10 14 14 S 1.76200 * 120.00265 * 179.97438 * 13 12 11 15 15 O 1.42106 * 106.39878 * 336.45848 * 14 13 12 16 16 O 1.42095 * 106.40168 * 203.54080 * 14 13 12 17 17 N 1.65594 * 107.21868 * 89.99835 * 14 13 12 18 18 C 1.46505 * 119.99849 * 65.00257 * 17 14 13 19 19 C 1.53005 * 109.47017 * 165.00063 * 18 17 14 20 20 C 1.53001 * 109.46885 * 179.97438 * 19 18 17 21 21 C 1.53781 * 113.61341 * 174.99772 * 20 19 18 22 22 C 1.53781 * 87.08070 * 140.06609 * 21 20 19 23 23 O 1.42905 * 113.61505 * 219.93701 * 22 21 20 24 24 C 1.53786 * 87.17350 * 334.52830 * 22 21 20 25 25 C 1.38232 * 119.99906 * 0.25176 * 13 12 11 26 26 C 1.38236 * 119.99865 * 359.49710 * 25 13 12 27 27 H 0.96998 * 120.00247 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46944 * 60.00031 * 9 7 2 29 29 H 1.09000 * 109.46877 * 300.00251 * 9 7 2 30 30 H 1.07999 * 120.00108 * 0.02562 * 11 10 9 31 31 H 1.08000 * 120.00725 * 180.02562 * 12 11 10 32 32 H 0.97000 * 120.00289 * 245.00474 * 17 14 13 33 33 H 1.09002 * 109.47205 * 45.00067 * 18 17 14 34 34 H 1.08998 * 109.47201 * 284.99857 * 18 17 14 35 35 H 1.09002 * 109.47130 * 59.99958 * 19 18 17 36 36 H 1.08998 * 109.46966 * 299.99937 * 19 18 17 37 37 H 1.09003 * 112.84746 * 43.80403 * 20 19 18 38 38 H 1.08999 * 113.61181 * 25.51665 * 21 20 19 39 39 H 1.08998 * 113.61680 * 254.61217 * 21 20 19 40 40 H 1.09002 * 113.61445 * 89.11830 * 22 21 20 41 41 H 0.96696 * 114.00145 * 178.47219 * 23 22 21 42 42 H 1.08992 * 113.61675 * 140.02412 * 24 22 21 43 43 H 1.09000 * 113.60973 * 270.92699 * 24 22 21 44 44 H 1.07999 * 120.00561 * 179.72279 * 25 13 12 45 45 H 1.08007 * 120.00141 * 180.24927 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6795 -4.1699 1.1966 12 6 3.5774 -5.2210 1.1966 13 6 4.0265 -5.7464 -0.0005 14 16 5.1715 -7.0856 -0.0005 15 8 5.8461 -7.0367 1.2492 16 8 5.8461 -7.0368 -1.2502 17 7 4.2878 -8.4861 -0.0005 18 6 3.4435 -8.8194 -1.1504 19 6 3.0407 -10.2937 -1.0770 20 6 2.1584 -10.6417 -2.2775 21 6 1.7973 -12.1339 -2.3647 22 6 0.3900 -11.6876 -2.7949 23 8 -0.6591 -12.4705 -2.2216 24 6 0.6596 -10.3736 -2.0427 25 6 3.5818 -5.2173 -1.1977 26 6 2.6799 -4.1697 -1.1977 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.3283 -3.7598 2.1319 31 1 3.9280 -5.6317 2.1319 32 1 4.3292 -9.0857 0.7609 33 1 3.9970 -8.6395 -2.0720 34 1 2.5486 -8.1972 -1.1366 35 1 2.4872 -10.4737 -0.1554 36 1 3.9355 -10.9159 -1.0908 37 1 2.5345 -10.2280 -3.2132 38 1 1.8181 -12.6451 -1.4022 39 1 2.3419 -12.6703 -3.1418 40 1 0.2826 -11.5600 -3.8721 41 1 -1.5473 -12.1801 -2.4699 42 1 0.2864 -9.4899 -2.5600 43 1 0.3699 -10.4045 -0.9924 44 1 3.9361 -5.6248 -2.1330 45 1 2.3294 -3.7589 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885142661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:05 Heat of formation + Delta-G solvation = -99.816877 kcal Electronic energy + Delta-G solvation = -26457.762861 eV Core-core repulsion = 22566.984811 eV Total energy + Delta-G solvation = -3890.778050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.83281 -38.81962 -37.18173 -36.40489 -35.76950 -34.98071 -33.69447 -31.57465 -30.59499 -30.26293 -27.44715 -26.13338 -24.64510 -23.74507 -22.39614 -21.96467 -20.91309 -20.03578 -19.34145 -17.98438 -17.68873 -17.23026 -16.47652 -16.38476 -15.87118 -15.29557 -15.18035 -14.93872 -14.81159 -14.38678 -14.34461 -13.82459 -13.64999 -13.13320 -12.89563 -12.85579 -12.81140 -12.40575 -12.24279 -12.12939 -11.99473 -11.91358 -11.75534 -11.70578 -11.50539 -11.28492 -11.01554 -10.97019 -10.92708 -10.60933 -10.51557 -10.49944 -10.11160 -9.81150 -9.70859 -9.55845 -8.60867 -8.55518 -8.40360 -6.18911 -4.23932 0.50201 1.31194 1.77672 3.05870 3.23074 3.29711 3.34166 3.75451 3.80576 4.09490 4.10855 4.20248 4.33656 4.36163 4.49468 4.52901 4.68993 4.89907 4.99418 5.14505 5.17913 5.20675 5.22503 5.29316 5.39610 5.40443 5.45527 5.55293 5.70037 5.70636 5.78719 5.83698 5.89360 5.91101 6.06160 6.23182 6.31318 6.48911 6.80152 6.82313 6.89122 7.27234 7.27235 7.41217 7.56956 7.76233 8.11397 8.80884 9.41149 10.91139 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.002572 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.047064 B =10884.314222 C =12649.200708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.022 4.022 13 C -0.704 4.704 14 S 2.699 3.301 15 O -0.967 6.967 16 O -0.965 6.965 17 N -1.121 6.121 18 C 0.116 3.884 19 C -0.113 4.113 20 C -0.109 4.109 21 C -0.124 4.124 22 C 0.073 3.927 23 O -0.563 6.563 24 C -0.167 4.167 25 C -0.025 4.025 26 C -0.146 4.146 27 H 0.264 0.736 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.416 0.584 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.378 0.622 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -23.481 -4.194 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.026 3.974 11 C -0.165 4.165 12 C -0.041 4.041 13 C -0.793 4.793 14 S 2.791 3.209 15 O -0.957 6.957 16 O -0.955 6.955 17 N -0.880 5.880 18 C -0.010 4.010 19 C -0.152 4.152 20 C -0.128 4.128 21 C -0.161 4.161 22 C 0.014 3.986 23 O -0.368 6.368 24 C -0.205 4.205 25 C -0.044 4.044 26 C -0.165 4.165 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.250 0.750 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.225 0.775 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.997 -23.506 -4.100 24.048 hybrid contribution -0.793 1.515 0.068 1.711 sum 2.204 -21.991 -4.032 22.466 Atomic orbital electron populations 1.69944 1.06071 1.27141 1.49842 1.25003 0.94933 0.99404 0.94804 0.86477 0.79838 0.82759 0.78329 1.20434 1.21018 1.19690 1.20969 0.93103 0.89463 1.52011 0.92289 1.18537 0.92646 0.89536 0.99015 1.21117 0.92204 0.91993 0.92064 1.21250 0.99126 0.97201 0.98905 1.20773 0.93091 0.94483 0.95764 1.30316 1.25202 1.23914 0.99900 1.01521 0.73351 0.72676 0.73313 1.93568 1.71651 1.86536 1.43959 1.93553 1.70959 1.86504 1.44489 1.55570 1.64748 1.39604 1.28074 1.21327 0.94452 0.97091 0.88143 1.21712 1.00059 0.95084 0.98315 1.22347 0.94874 0.96368 0.99233 1.23109 0.93935 0.96329 1.02775 1.23376 0.87820 0.91244 0.96159 1.86515 1.17591 1.58335 1.74404 1.23844 0.96072 0.98369 1.02213 1.20780 0.93281 0.94676 0.95707 1.21244 0.99112 0.97243 0.98864 0.92619 0.94727 0.94729 0.85353 0.85263 0.75027 0.90174 0.91354 0.90862 0.90724 0.88391 0.89123 0.90823 0.90131 0.77464 0.90911 0.89046 0.85287 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.97 9.09 -34.44 -0.31 -14.28 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 10 C 0.03 0.54 5.07 -104.63 -0.53 0.01 16 11 C -0.15 -2.69 9.70 -39.59 -0.38 -3.08 16 12 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 13 C -0.70 -10.87 5.95 -39.58 -0.24 -11.10 16 14 S 2.70 36.44 5.74 -107.50 -0.62 35.82 16 15 O -0.97 -15.40 17.28 -57.17 -0.99 -16.39 16 16 O -0.97 -15.25 16.75 -57.17 -0.96 -16.21 16 17 N -1.12 -10.56 6.00 -10.61 -0.06 -10.63 16 18 C 0.12 0.96 6.21 -4.04 -0.03 0.94 16 19 C -0.11 -0.73 5.20 -26.73 -0.14 -0.87 16 20 C -0.11 -0.67 3.65 -89.67 -0.33 -1.00 16 21 C -0.12 -0.79 7.47 -25.92 -0.19 -0.99 16 22 C 0.07 0.48 5.20 -25.92 -0.13 0.34 16 23 O -0.56 -4.29 13.67 -35.23 -0.48 -4.77 16 24 C -0.17 -1.10 7.48 -25.77 -0.19 -1.29 16 25 C -0.02 -0.40 9.52 -39.58 -0.38 -0.77 16 26 C -0.15 -2.65 9.70 -39.58 -0.38 -3.03 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 29 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 32 H 0.42 3.03 8.65 -34.47 -0.30 2.73 16 33 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.38 1.39 9.12 45.56 0.42 1.80 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.67 7.91 -51.93 -0.41 0.26 16 44 H 0.13 1.73 7.61 -52.49 -0.40 1.33 16 45 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -34.23 389.71 -11.46 -45.70 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.09 Total: 2.72 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: -3.86 Total: -33.47 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.67 Total: -35.30 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -2.43 Total: -37.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 36.44 SS G_CDS: -0.62 Total: 35.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.23 -11.46 -45.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885142661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.118 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds