Wall clock time and date at job start Sat Apr 11 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00000 * 2 1 4 4 H 1.48507 * 109.47115 * 270.00539 * 3 2 1 5 5 H 1.48497 * 109.47111 * 30.00280 * 3 2 1 6 6 H 1.48498 * 109.47308 * 150.00259 * 3 2 1 7 7 C 1.37877 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47392 * 180.02562 * 9 7 2 11 11 C 1.38230 * 119.99926 * 89.99896 * 10 9 7 12 12 C 1.38232 * 120.00164 * 179.97438 * 11 10 9 13 13 C 1.38239 * 119.99960 * 0.02562 * 12 11 10 14 14 S 1.76200 * 120.00265 * 179.97438 * 13 12 11 15 15 O 1.42106 * 106.39878 * 336.45848 * 14 13 12 16 16 O 1.42095 * 106.40168 * 203.54080 * 14 13 12 17 17 N 1.65594 * 107.21868 * 89.99835 * 14 13 12 18 18 C 1.46505 * 119.99849 * 65.00257 * 17 14 13 19 19 C 1.53005 * 109.47017 * 165.00063 * 18 17 14 20 20 C 1.53001 * 109.46885 * 179.97438 * 19 18 17 21 21 C 1.53781 * 113.61341 * 174.99772 * 20 19 18 22 22 C 1.53781 * 87.08070 * 140.06609 * 21 20 19 23 23 O 1.42905 * 113.61505 * 219.93701 * 22 21 20 24 24 C 1.53786 * 87.17350 * 334.52830 * 22 21 20 25 25 C 1.38232 * 119.99906 * 0.25176 * 13 12 11 26 26 C 1.38236 * 119.99865 * 359.49710 * 25 13 12 27 27 H 0.96998 * 120.00247 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46944 * 60.00031 * 9 7 2 29 29 H 1.09000 * 109.46877 * 300.00251 * 9 7 2 30 30 H 1.07999 * 120.00108 * 0.02562 * 11 10 9 31 31 H 1.08000 * 120.00725 * 180.02562 * 12 11 10 32 32 H 0.97000 * 120.00289 * 245.00474 * 17 14 13 33 33 H 1.09002 * 109.47205 * 45.00067 * 18 17 14 34 34 H 1.08998 * 109.47201 * 284.99857 * 18 17 14 35 35 H 1.09002 * 109.47130 * 59.99958 * 19 18 17 36 36 H 1.08998 * 109.46966 * 299.99937 * 19 18 17 37 37 H 1.09003 * 112.84746 * 43.80403 * 20 19 18 38 38 H 1.08999 * 113.61181 * 25.51665 * 21 20 19 39 39 H 1.08998 * 113.61680 * 254.61217 * 21 20 19 40 40 H 1.09002 * 113.61445 * 89.11830 * 22 21 20 41 41 H 0.96696 * 114.00145 * 178.47219 * 23 22 21 42 42 H 1.08992 * 113.61675 * 140.02412 * 24 22 21 43 43 H 1.09000 * 113.60973 * 270.92699 * 24 22 21 44 44 H 1.07999 * 120.00561 * 179.72279 * 25 13 12 45 45 H 1.08007 * 120.00141 * 180.24927 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6795 -4.1699 1.1966 12 6 3.5774 -5.2210 1.1966 13 6 4.0265 -5.7464 -0.0005 14 16 5.1715 -7.0856 -0.0005 15 8 5.8461 -7.0367 1.2492 16 8 5.8461 -7.0368 -1.2502 17 7 4.2878 -8.4861 -0.0005 18 6 3.4435 -8.8194 -1.1504 19 6 3.0407 -10.2937 -1.0770 20 6 2.1584 -10.6417 -2.2775 21 6 1.7973 -12.1339 -2.3647 22 6 0.3900 -11.6876 -2.7949 23 8 -0.6591 -12.4705 -2.2216 24 6 0.6596 -10.3736 -2.0427 25 6 3.5818 -5.2173 -1.1977 26 6 2.6799 -4.1697 -1.1977 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.3283 -3.7598 2.1319 31 1 3.9280 -5.6317 2.1319 32 1 4.3292 -9.0857 0.7609 33 1 3.9970 -8.6395 -2.0720 34 1 2.5486 -8.1972 -1.1366 35 1 2.4872 -10.4737 -0.1554 36 1 3.9355 -10.9159 -1.0908 37 1 2.5345 -10.2280 -3.2132 38 1 1.8181 -12.6451 -1.4022 39 1 2.3419 -12.6703 -3.1418 40 1 0.2826 -11.5600 -3.8721 41 1 -1.5473 -12.1801 -2.4699 42 1 0.2864 -9.4899 -2.5600 43 1 0.3699 -10.4045 -0.9924 44 1 3.9361 -5.6248 -2.1330 45 1 2.3294 -3.7589 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885142661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:04 Heat of formation + Delta-G solvation = -124.467128 kcal Electronic energy + Delta-G solvation = -26458.831776 eV Core-core repulsion = 22566.984811 eV Total energy + Delta-G solvation = -3891.846965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32693 -40.22465 -38.35051 -37.07138 -36.95224 -35.63494 -35.57141 -33.31823 -31.95662 -30.89645 -29.24631 -26.62177 -25.59680 -25.25581 -23.72998 -22.59000 -22.42134 -20.70571 -20.23355 -19.00233 -18.60745 -18.46541 -18.13618 -17.31688 -16.86699 -16.49297 -16.26184 -16.00380 -15.75451 -15.53168 -15.34509 -15.17501 -14.63920 -14.44876 -14.24852 -13.92501 -13.60941 -13.41414 -13.39086 -13.32343 -13.23564 -13.15866 -13.13610 -12.69091 -12.66999 -12.61656 -12.31443 -12.12190 -12.03596 -11.81455 -11.67930 -11.54880 -11.43128 -11.06868 -10.66027 -10.61276 -10.42462 -9.95863 -9.94616 -8.27869 -6.40527 -0.60577 -0.05847 0.40202 1.37811 1.38232 1.49637 2.03870 2.34355 2.57294 2.83703 3.04836 3.30193 3.40007 3.62185 3.72041 3.86055 3.90827 3.98250 4.07712 4.09728 4.16181 4.33797 4.41676 4.48076 4.51457 4.65057 4.72898 4.81902 4.85832 4.89885 4.91580 4.94605 5.04525 5.10967 5.17451 5.24766 5.25661 5.29522 5.33757 5.37309 5.59367 5.66492 5.86422 5.92704 6.09483 6.12441 6.71325 6.92599 7.28607 8.82218 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.002572 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.047064 B =10884.314222 C =12649.200708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.004 4.004 11 C -0.157 4.157 12 C -0.019 4.019 13 C -0.701 4.701 14 S 2.727 3.273 15 O -0.988 6.988 16 O -0.982 6.982 17 N -1.104 6.104 18 C 0.107 3.893 19 C -0.108 4.108 20 C -0.104 4.104 21 C -0.126 4.126 22 C 0.069 3.931 23 O -0.584 6.584 24 C -0.169 4.169 25 C -0.019 4.019 26 C -0.154 4.154 27 H 0.267 0.733 28 H 0.014 0.986 29 H 0.012 0.988 30 H 0.128 0.872 31 H 0.154 0.846 32 H 0.429 0.571 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.392 0.608 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.158 0.842 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -24.852 -4.714 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.012 3.988 10 C -0.004 4.004 11 C -0.176 4.176 12 C -0.039 4.039 13 C -0.787 4.787 14 S 2.817 3.183 15 O -0.978 6.978 16 O -0.972 6.972 17 N -0.867 5.867 18 C -0.018 4.018 19 C -0.147 4.147 20 C -0.123 4.123 21 C -0.163 4.163 22 C 0.010 3.990 23 O -0.392 6.392 24 C -0.207 4.207 25 C -0.038 4.038 26 C -0.173 4.173 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.146 0.854 31 H 0.172 0.828 32 H 0.266 0.734 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.242 0.758 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.175 0.825 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.478 -24.865 -4.612 25.682 hybrid contribution -1.268 1.781 0.217 2.197 sum 3.211 -23.084 -4.395 23.717 Atomic orbital electron populations 1.70051 1.07513 1.28150 1.50754 1.25857 0.95764 1.02941 0.94368 0.85468 0.78563 0.78540 0.78648 1.19593 1.20327 1.19299 1.21288 0.93041 0.91047 1.51742 0.92851 1.18260 0.92988 0.90738 0.96862 1.20816 0.93291 0.92304 0.93974 1.21302 0.99945 0.98112 0.98218 1.21018 0.92094 0.93464 0.97284 1.30807 1.24244 1.24257 0.99437 1.00706 0.72750 0.72569 0.72280 1.93539 1.72384 1.86962 1.44901 1.93534 1.71495 1.86894 1.45310 1.55215 1.64444 1.37956 1.29115 1.21553 0.94287 0.98372 0.87639 1.21685 1.00517 0.93837 0.98662 1.22346 0.94340 0.96160 0.99486 1.23116 0.94111 0.96479 1.02642 1.23504 0.87685 0.90945 0.96821 1.86472 1.18852 1.58970 1.74913 1.23826 0.96656 0.98548 1.01651 1.21052 0.92060 0.93478 0.97194 1.21311 0.99800 0.98049 0.98132 0.92366 0.96749 0.96951 0.85420 0.82808 0.73427 0.89763 0.91205 0.90590 0.89847 0.87432 0.89971 0.89968 0.88806 0.75792 0.90841 0.90057 0.82451 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.01 13.29 21.45 0.28 -53.73 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.53 -29.60 9.09 25.60 0.23 -29.36 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.05 2.47 5.10 29.10 0.15 2.61 16 10 C 0.00 -0.15 5.07 -19.87 -0.10 -0.25 16 11 C -0.16 -5.83 9.70 22.27 0.22 -5.61 16 12 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 13 C -0.70 -20.19 5.95 22.27 0.13 -20.06 16 14 S 2.73 66.42 5.74 -56.49 -0.32 66.09 16 15 O -0.99 -28.97 17.28 -128.00 -2.21 -31.18 16 16 O -0.98 -28.30 16.75 -128.00 -2.14 -30.44 16 17 N -1.10 -17.58 6.00 -187.47 -1.12 -18.71 16 18 C 0.11 1.48 6.21 86.38 0.54 2.01 16 19 C -0.11 -1.12 5.20 30.60 0.16 -0.96 16 20 C -0.10 -1.05 3.65 -10.18 -0.04 -1.08 16 21 C -0.13 -1.39 7.47 31.12 0.23 -1.16 16 22 C 0.07 0.80 5.20 31.12 0.16 0.96 16 23 O -0.58 -8.31 13.67 -148.98 -2.04 -10.34 16 24 C -0.17 -1.99 7.48 31.21 0.23 -1.75 16 25 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 26 C -0.15 -5.59 9.70 22.27 0.22 -5.37 16 27 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.01 0.76 8.09 -2.39 -0.02 0.74 16 29 H 0.01 0.66 8.08 -2.39 -0.02 0.64 16 30 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.15 3.95 7.62 -2.91 -0.02 3.93 16 32 H 0.43 4.91 8.65 -96.75 -0.84 4.08 16 33 H 0.08 1.14 7.75 -2.39 -0.02 1.12 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 0.77 7.85 -2.39 -0.02 0.75 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 0.90 8.13 -2.39 -0.02 0.88 16 38 H 0.08 1.05 8.10 -2.39 -0.02 1.03 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.39 2.54 9.12 -74.06 -0.68 1.86 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.12 7.91 -2.39 -0.02 1.10 16 44 H 0.16 3.78 7.61 -2.91 -0.02 3.76 16 45 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -73.43 389.71 -3.02 -76.45 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.51 Total: 16.12 kcal Atomic # 6 Polarization: -62.78 SS G_CDS: 3.02 Total: -59.76 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -0.84 Total: -72.44 kcal Atomic # 8 Polarization: -65.58 SS G_CDS: -6.39 Total: -71.97 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 66.42 SS G_CDS: -0.32 Total: 66.09 kcal Total: -73.43 -3.02 -76.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885142661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.016 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds