Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48493 * 109.46919 * 239.99858 * 3 2 1 5 5 H 1.48505 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46913 * 119.99711 * 3 2 1 7 7 C 1.37875 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47224 * 179.97438 * 9 7 2 11 11 C 1.38237 * 120.00127 * 89.99742 * 10 9 7 12 12 C 1.38234 * 120.00256 * 179.97438 * 11 10 9 13 13 C 1.38235 * 119.99563 * 0.02562 * 12 11 10 14 14 S 1.76207 * 119.99554 * 179.97438 * 13 12 11 15 15 O 1.42097 * 106.40015 * 336.45346 * 14 13 12 16 16 O 1.42102 * 106.39905 * 203.54157 * 14 13 12 17 17 N 1.65599 * 107.21714 * 89.99944 * 14 13 12 18 18 C 1.46499 * 120.00012 * 65.00092 * 17 14 13 19 19 C 1.53000 * 109.46840 * 165.00017 * 18 17 14 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 17 21 21 O 1.42898 * 112.85457 * 53.79921 * 20 19 18 22 22 C 1.53785 * 113.61129 * 282.49141 * 20 19 18 23 23 C 1.53782 * 87.08416 * 220.01965 * 22 20 19 24 24 C 1.53781 * 113.61359 * 184.99815 * 20 19 18 25 25 C 1.38236 * 120.00290 * 0.25399 * 13 12 11 26 26 C 1.38234 * 119.99978 * 270.02169 * 10 9 7 27 27 H 0.97000 * 119.99485 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47244 * 59.99689 * 9 7 2 29 29 H 1.08997 * 109.46724 * 299.99354 * 9 7 2 30 30 H 1.08006 * 120.00043 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.99856 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99797 * 244.99292 * 17 14 13 33 33 H 1.09002 * 109.47391 * 44.99686 * 18 17 14 34 34 H 1.09001 * 109.46813 * 284.99743 * 18 17 14 35 35 H 1.09001 * 109.47194 * 299.99493 * 19 18 17 36 36 H 1.08992 * 109.47399 * 59.99666 * 19 18 17 37 37 H 0.96707 * 113.99846 * 309.66943 * 21 20 19 38 38 H 1.09001 * 113.61633 * 334.57474 * 22 20 19 39 39 H 1.09000 * 113.61144 * 105.46830 * 22 20 19 40 40 H 1.09004 * 113.61448 * 270.88673 * 23 22 20 41 41 H 1.09002 * 113.61332 * 139.98082 * 23 22 20 42 42 H 1.08993 * 113.61692 * 254.52688 * 24 20 19 43 43 H 1.09002 * 113.61799 * 25.43079 * 24 20 19 44 44 H 1.08003 * 119.99947 * 179.72890 * 25 13 12 45 45 H 1.07997 * 120.00282 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6795 -4.1700 1.1977 12 6 3.5774 -5.2210 1.1977 13 6 4.0265 -5.7464 0.0005 14 16 5.1715 -7.0857 0.0006 15 8 5.8461 -7.0367 1.2502 16 8 5.8460 -7.0369 -1.2492 17 7 4.2877 -8.4861 0.0007 18 6 3.4433 -8.8195 -1.1491 19 6 3.0406 -10.2937 -1.0757 20 6 2.1593 -10.6421 -2.2768 21 8 2.7632 -10.3003 -3.5260 22 6 0.7077 -10.1534 -2.1381 23 6 0.2807 -11.4886 -2.7704 24 6 1.5984 -12.0733 -2.2349 25 6 3.5817 -5.2172 -1.1966 26 6 2.6798 -4.1697 -1.1966 27 1 -0.4849 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.3290 -3.7592 2.1331 31 1 3.9280 -5.6316 2.1330 32 1 4.3292 -9.0857 0.7620 33 1 3.9968 -8.6395 -2.0708 34 1 2.5485 -8.1972 -1.1353 35 1 3.9354 -10.9160 -1.0895 36 1 2.4872 -10.4737 -0.1541 37 1 3.0970 -9.3936 -3.5665 38 1 0.3833 -10.0364 -1.1041 39 1 0.4786 -9.2848 -2.7555 40 1 0.2266 -11.4589 -3.8587 41 1 -0.6079 -11.9239 -2.3131 42 1 2.0882 -12.7548 -2.9304 43 1 1.5175 -12.4813 -1.2273 44 1 3.9360 -5.6249 -2.1319 45 1 2.3289 -3.7593 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885175055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = -94.256592 kcal Electronic energy + Delta-G solvation = -26939.381315 eV Core-core repulsion = 23048.844377 eV Total energy + Delta-G solvation = -3890.536938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15962 -38.85027 -37.21707 -35.92912 -35.79977 -34.91864 -33.71121 -31.59529 -30.62713 -30.47946 -27.46799 -26.20797 -24.97252 -23.76371 -22.44860 -22.10642 -20.94294 -20.03209 -19.55484 -18.01581 -17.36639 -16.89307 -16.48070 -16.34470 -15.76349 -15.37146 -15.23668 -15.14723 -14.77281 -14.40891 -14.36986 -13.94157 -13.81932 -13.16051 -12.94673 -12.87416 -12.70975 -12.41839 -12.27074 -12.08403 -12.05986 -11.98143 -11.76600 -11.71064 -11.51885 -11.42747 -11.19452 -10.99776 -10.93220 -10.57250 -10.51518 -10.46464 -9.99446 -9.86136 -9.75117 -9.61286 -8.63856 -8.56143 -8.43180 -6.19640 -4.24900 0.44140 1.27596 1.74595 2.98643 3.24370 3.28656 3.32048 3.65573 3.70986 4.06267 4.06301 4.21155 4.34587 4.37707 4.46260 4.49925 4.65392 4.79933 4.99601 5.10466 5.13757 5.18832 5.19689 5.31006 5.41049 5.41878 5.48880 5.59457 5.67176 5.67982 5.72705 5.79263 5.86724 5.91709 6.00535 6.20164 6.28097 6.45738 6.72064 6.79377 6.86759 7.25273 7.29611 7.38818 7.55149 7.75177 8.10182 8.79616 9.40230 10.90345 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.002723 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.212335 B =10281.967758 C =11659.058495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.040 3.960 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.022 4.022 13 C -0.704 4.704 14 S 2.698 3.302 15 O -0.965 6.965 16 O -0.964 6.964 17 N -1.119 6.119 18 C 0.112 3.888 19 C -0.144 4.144 20 C 0.109 3.891 21 O -0.542 6.542 22 C -0.168 4.168 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.026 4.026 26 C -0.145 4.145 27 H 0.265 0.735 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.417 0.583 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.381 0.619 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 -23.164 -2.107 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.041 4.041 13 C -0.794 4.794 14 S 2.791 3.209 15 O -0.956 6.956 16 O -0.954 6.954 17 N -0.878 5.878 18 C -0.015 4.015 19 C -0.183 4.183 20 C 0.067 3.933 21 O -0.349 6.349 22 C -0.206 4.206 23 C -0.173 4.173 24 C -0.164 4.164 25 C -0.045 4.045 26 C -0.164 4.164 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.251 0.749 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.929 -23.480 -2.420 23.786 hybrid contribution -0.142 1.763 0.533 1.847 sum 2.787 -21.717 -1.887 21.976 Atomic orbital electron populations 1.69938 1.06070 1.27270 1.49692 1.25001 0.94935 0.99395 0.94765 0.86534 0.79519 0.82405 0.78907 1.20022 1.21083 1.20024 1.20927 0.93063 0.89469 1.52228 0.92341 1.18535 0.92636 0.89509 0.99033 1.21129 0.92162 0.91959 0.92054 1.21258 0.99095 0.97170 0.98925 1.20771 0.93087 0.94510 0.95750 1.30298 1.25243 1.23925 0.99933 1.01560 0.73342 0.72649 0.73363 1.93570 1.71561 1.86482 1.43952 1.93559 1.70894 1.86461 1.44458 1.55544 1.64645 1.39740 1.27837 1.21274 0.94677 0.96972 0.88527 1.22331 1.01236 0.95596 0.99143 1.22173 0.90722 0.96968 0.83442 1.86490 1.79124 1.35655 1.33656 1.23670 0.96351 0.98554 1.02026 1.22755 0.97086 0.96428 1.01050 1.23024 0.96429 0.94831 1.02129 1.20780 0.93311 0.94745 0.95677 1.21249 0.99058 0.97197 0.98897 0.92546 0.94712 0.94721 0.85331 0.85258 0.74934 0.90284 0.91052 0.90100 0.89760 0.76968 0.89166 0.90591 0.89791 0.91350 0.90565 0.88859 0.85273 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.93 9.09 -34.44 -0.31 -14.24 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 10 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 11 C -0.15 -2.64 9.70 -39.58 -0.38 -3.02 16 12 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 13 C -0.70 -10.54 5.95 -39.58 -0.24 -10.78 16 14 S 2.70 35.19 5.74 -107.50 -0.62 34.57 16 15 O -0.97 -15.02 17.28 -57.17 -0.99 -16.01 16 16 O -0.96 -14.79 16.75 -57.17 -0.96 -15.75 16 17 N -1.12 -9.92 6.00 -10.61 -0.06 -9.98 16 18 C 0.11 0.86 5.79 -4.04 -0.02 0.84 16 19 C -0.14 -0.92 4.99 -26.73 -0.13 -1.05 16 20 C 0.11 0.79 1.38 -89.81 -0.12 0.66 16 21 O -0.54 -4.67 13.39 -35.23 -0.47 -5.14 16 22 C -0.17 -1.18 7.32 -25.92 -0.19 -1.37 16 23 C -0.14 -0.93 8.02 -25.91 -0.21 -1.14 16 24 C -0.13 -0.84 7.47 -25.91 -0.19 -1.03 16 25 C -0.03 -0.39 9.52 -39.58 -0.38 -0.77 16 26 C -0.15 -2.59 9.70 -39.58 -0.38 -2.97 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 31 H 0.13 1.75 7.62 -52.49 -0.40 1.35 16 32 H 0.42 2.80 8.65 -34.47 -0.30 2.50 16 33 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 34 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.44 8.05 -51.93 -0.42 0.02 16 37 H 0.38 2.33 7.18 45.56 0.33 2.66 16 38 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.13 1.66 7.61 -52.48 -0.40 1.26 16 45 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -33.62 386.10 -11.40 -45.02 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.12 Total: 3.28 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -3.72 Total: -33.19 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.67 Total: -34.56 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -2.42 Total: -36.90 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 35.19 SS G_CDS: -0.62 Total: 34.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.62 -11.40 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885175055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.237 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds