Wall clock time and date at job start Sat Apr 11 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00180 * 2 1 4 4 H 1.48496 * 109.47058 * 269.99697 * 3 2 1 5 5 H 1.48497 * 109.46917 * 29.99814 * 3 2 1 6 6 H 1.48500 * 109.47027 * 149.99820 * 3 2 1 7 7 C 1.37877 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99822 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00282 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.38238 * 119.99712 * 90.00635 * 10 9 7 12 12 C 1.38237 * 119.99644 * 179.97438 * 11 10 9 13 13 C 1.38240 * 120.00033 * 359.97438 * 12 11 10 14 14 S 1.76196 * 119.99728 * 180.02562 * 13 12 11 15 15 O 1.42102 * 106.40640 * 336.45828 * 14 13 12 16 16 O 1.42101 * 106.40221 * 203.54121 * 14 13 12 17 17 N 1.65597 * 107.22133 * 89.99988 * 14 13 12 18 18 C 1.46506 * 119.99791 * 64.99502 * 17 14 13 19 19 H 1.09000 * 110.01857 * 335.06887 * 18 17 14 20 20 C 1.54266 * 110.02923 * 96.45901 * 18 17 14 21 21 C 1.54888 * 104.19412 * 142.89237 * 20 18 17 22 22 C 1.54890 * 102.75023 * 322.05606 * 21 20 18 23 23 C 1.53878 * 110.03056 * 213.62283 * 18 17 14 24 24 H 1.08994 * 110.02913 * 121.43299 * 23 18 17 25 25 C 1.52999 * 110.03236 * 0.02562 * 23 18 17 26 26 O 1.42901 * 109.47043 * 174.99791 * 25 23 18 27 27 C 1.38229 * 119.99931 * 0.27486 * 13 12 11 28 28 C 1.38235 * 119.99894 * 270.01996 * 10 9 7 29 29 H 0.97000 * 119.99961 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46878 * 60.00391 * 9 7 2 31 31 H 1.09002 * 109.47207 * 300.00180 * 9 7 2 32 32 H 1.07994 * 120.00302 * 359.97438 * 11 10 9 33 33 H 1.08000 * 119.99752 * 179.97438 * 12 11 10 34 34 H 0.96995 * 120.00100 * 245.27417 * 17 14 13 35 35 H 1.09003 * 110.48290 * 261.56997 * 20 18 17 36 36 H 1.09004 * 110.48914 * 24.20998 * 20 18 17 37 37 H 1.09006 * 110.75388 * 80.37462 * 21 20 18 38 38 H 1.08997 * 110.75312 * 203.55369 * 21 20 18 39 39 H 1.08994 * 110.48162 * 156.62157 * 22 21 20 40 40 H 1.08993 * 110.48513 * 279.13099 * 22 21 20 41 41 H 1.09003 * 109.47040 * 295.00073 * 25 23 18 42 42 H 1.09002 * 109.47004 * 55.00082 * 25 23 18 43 43 H 0.96696 * 114.00025 * 179.97438 * 26 25 23 44 44 H 1.08006 * 119.99944 * 179.72774 * 27 13 12 45 45 H 1.07994 * 120.00187 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0023 11 6 4.2446 -3.2674 -1.1944 12 6 4.7058 -4.5705 -1.1934 13 6 4.9366 -5.2211 0.0044 14 16 5.5251 -6.8819 0.0056 15 8 5.1460 -7.4430 -1.2437 16 8 5.1459 -7.4410 1.2558 17 7 7.1798 -6.8157 0.0057 18 6 7.8902 -6.2497 1.1552 19 1 7.2439 -5.5504 1.6858 20 6 8.3410 -7.3781 2.1056 21 6 9.7253 -6.9111 2.6199 22 6 10.3518 -6.2530 1.3654 23 6 9.1687 -5.5343 0.6845 24 1 9.1436 -4.4875 0.9870 25 6 9.2974 -5.6376 -0.8365 26 8 10.4229 -4.8726 -1.2724 27 6 4.7008 -4.5704 1.2009 28 6 4.2432 -3.2660 1.2000 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6802 0.8912 31 1 3.8752 -0.6805 -0.8888 32 1 4.0647 -2.7590 -2.1301 33 1 4.8858 -5.0804 -2.1283 34 1 7.6784 -7.1479 -0.7570 35 1 7.6408 -7.4809 2.9347 36 1 8.4329 -8.3194 1.5637 37 1 9.6134 -6.1828 3.4231 38 1 10.3210 -7.7614 2.9517 39 1 11.1191 -5.5348 1.6545 40 1 10.7706 -7.0123 0.7052 41 1 9.4358 -6.6812 -1.1194 42 1 8.3921 -5.2512 -1.3048 43 1 10.5657 -4.8928 -2.2285 44 1 4.8769 -5.0802 2.1367 45 1 4.0622 -2.7565 2.1348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885224792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:18 Heat of formation + Delta-G solvation = -137.302648 kcal Electronic energy + Delta-G solvation = -27695.277608 eV Core-core repulsion = 23802.874052 eV Total energy + Delta-G solvation = -3892.403555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33362 -40.18456 -38.34828 -37.11199 -36.97962 -35.55928 -34.51021 -33.56245 -31.98989 -30.90513 -29.72736 -28.13919 -25.44957 -25.27284 -23.77662 -22.33684 -21.68845 -20.96460 -20.44771 -19.29136 -19.04138 -18.57797 -17.98190 -17.22103 -16.77210 -16.57230 -16.42947 -15.99934 -15.84304 -15.46339 -15.34006 -15.02678 -14.64229 -14.48549 -14.39117 -14.20088 -13.86709 -13.64285 -13.48026 -13.28333 -13.17177 -13.16762 -13.06988 -12.58226 -12.53829 -12.14117 -12.08824 -11.96134 -11.92289 -11.83055 -11.73130 -11.59411 -11.55009 -11.42164 -10.83951 -10.82700 -10.47289 -9.97903 -9.95344 -8.34854 -6.42230 -0.65986 -0.09931 0.37482 1.35344 1.37108 1.48497 1.96580 2.31518 2.51248 2.77172 2.99616 3.22806 3.29884 3.62568 3.66208 3.83910 3.95243 4.05390 4.06646 4.23159 4.31771 4.42667 4.44410 4.45788 4.54430 4.62274 4.63622 4.74439 4.76965 4.82336 4.83428 4.98148 4.98601 5.07354 5.14295 5.15626 5.25933 5.27124 5.35624 5.42458 5.48101 5.51822 5.76220 5.92043 6.01114 6.17695 6.64429 6.92681 7.21838 8.81635 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.003087 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.917902 B = 9068.726160 C = 9801.701893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.242 1.242 7 C -0.527 4.527 8 H 0.027 0.973 9 C 0.012 3.988 10 C -0.002 4.002 11 C -0.154 4.154 12 C -0.021 4.021 13 C -0.699 4.699 14 S 2.720 3.280 15 O -0.986 6.986 16 O -0.977 6.977 17 N -1.099 6.099 18 C 0.151 3.849 19 H 0.094 0.906 20 C -0.141 4.141 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.098 4.098 24 H 0.081 0.919 25 C 0.075 3.925 26 O -0.590 6.590 27 C -0.023 4.023 28 C -0.153 4.153 29 H 0.269 0.731 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.428 0.572 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.396 0.604 44 H 0.156 0.844 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.119 -13.683 0.731 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.564 4.564 8 H 0.045 0.955 9 C -0.026 4.026 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.040 4.040 13 C -0.786 4.786 14 S 2.811 3.189 15 O -0.976 6.976 16 O -0.967 6.967 17 N -0.863 5.863 18 C 0.044 3.956 19 H 0.112 0.888 20 C -0.181 4.181 21 C -0.160 4.160 22 C -0.146 4.146 23 C -0.119 4.119 24 H 0.099 0.901 25 C -0.003 4.003 26 O -0.398 6.398 27 C -0.042 4.042 28 C -0.172 4.172 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.267 0.733 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.245 0.755 44 H 0.174 0.826 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 24.391 -14.156 1.507 28.242 hybrid contribution -0.578 1.499 -1.022 1.904 sum 23.813 -12.657 0.485 26.972 Atomic orbital electron populations 1.70055 1.08456 1.28494 1.51706 1.26003 0.95602 1.03523 0.93674 0.85619 0.79564 0.77814 0.79458 1.18889 1.20927 1.16505 1.21064 0.90516 0.93128 1.51728 0.95509 1.18826 0.94479 0.90686 0.98565 1.20592 0.88832 0.96824 0.93969 1.21358 1.01810 0.95747 0.98384 1.21029 0.92302 0.93500 0.97182 1.30798 1.22006 1.26270 0.99563 1.00945 0.72621 0.72892 0.72488 1.93543 1.82157 1.77009 1.44911 1.93551 1.82232 1.75859 1.45077 1.55532 1.24376 1.77578 1.28780 1.21624 0.93530 0.95114 0.85287 0.88819 1.22924 0.97820 0.98326 0.99000 1.22502 0.95124 1.00899 0.97491 1.22321 0.96324 0.99274 0.96679 1.21965 0.94403 1.00649 0.94836 0.90095 1.22310 0.88494 0.95188 0.94275 1.86425 1.49804 1.73714 1.29893 1.21064 0.92460 0.93536 0.97160 1.21359 1.01731 0.95743 0.98358 0.92190 0.94096 0.94273 0.84837 0.82726 0.73285 0.90655 0.90058 0.90843 0.90063 0.91464 0.90915 0.91719 0.92988 0.75479 0.82605 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 2 C 0.01 0.55 5.47 84.65 0.46 1.01 16 3 Si 0.95 42.30 27.47 68.60 1.88 44.19 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 7 C -0.53 -29.75 9.65 25.60 0.25 -29.50 16 8 H 0.03 1.71 7.98 -2.91 -0.02 1.69 16 9 C 0.01 0.52 4.17 29.10 0.12 0.64 16 10 C 0.00 -0.07 5.07 -19.86 -0.10 -0.17 16 11 C -0.15 -5.42 9.70 22.27 0.22 -5.20 16 12 C -0.02 -0.63 9.52 22.27 0.21 -0.41 16 13 C -0.70 -19.75 5.84 22.27 0.13 -19.62 16 14 S 2.72 65.47 5.66 -56.49 -0.32 65.15 16 15 O -0.99 -28.42 17.28 -128.00 -2.21 -30.63 16 16 O -0.98 -27.98 17.04 -128.00 -2.18 -30.17 16 17 N -1.10 -17.24 4.62 -166.36 -0.77 -18.01 16 18 C 0.15 2.26 3.42 45.72 0.16 2.42 16 19 H 0.09 1.44 7.32 -2.39 -0.02 1.43 16 20 C -0.14 -1.92 6.53 31.67 0.21 -1.71 16 21 C -0.12 -1.34 6.91 31.88 0.22 -1.12 16 22 C -0.11 -1.30 6.22 31.67 0.20 -1.10 16 23 C -0.10 -1.38 3.19 -10.07 -0.03 -1.41 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 C 0.08 0.95 5.01 71.98 0.36 1.32 16 26 O -0.59 -8.45 13.51 -148.98 -2.01 -10.46 16 27 C -0.02 -0.68 8.95 22.27 0.20 -0.48 16 28 C -0.15 -5.36 9.70 22.27 0.22 -5.14 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.04 1.76 7.14 -2.39 -0.02 1.75 16 31 H 0.04 1.66 7.51 -2.39 -0.02 1.65 16 32 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.16 3.77 7.62 -2.91 -0.02 3.75 16 34 H 0.43 4.75 6.44 -96.75 -0.62 4.12 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.03 8.05 -2.38 -0.02 1.01 16 37 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.81 7.77 -2.39 -0.02 0.79 16 41 H 0.06 0.57 7.05 -2.39 -0.02 0.55 16 42 H 0.05 0.67 7.51 -2.39 -0.02 0.65 16 43 H 0.40 2.42 9.12 -74.06 -0.68 1.75 16 44 H 0.16 3.75 7.61 -2.91 -0.02 3.73 16 45 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -76.19 375.90 -2.84 -79.03 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.34 Total: 19.70 kcal Atomic # 6 Polarization: -63.31 SS G_CDS: 2.81 Total: -60.50 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -0.47 Total: -76.31 kcal Atomic # 8 Polarization: -64.85 SS G_CDS: -6.41 Total: -71.25 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.88 Total: 44.19 kcal Atomic # 16 Polarization: 65.47 SS G_CDS: -0.32 Total: 65.15 kcal Total: -76.19 -2.84 -79.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885224792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.272 kcal (2) G-P(sol) polarization free energy of solvation -76.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds