Wall clock time and date at job start Sat Apr 11 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48503 * 109.46960 * 270.00022 * 3 2 1 5 5 H 1.48494 * 109.47399 * 29.99756 * 3 2 1 6 6 H 1.48504 * 109.47411 * 150.00175 * 3 2 1 7 7 C 1.37877 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00503 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99670 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.38232 * 120.00008 * 90.00107 * 10 9 7 12 12 C 1.38231 * 120.00361 * 179.97438 * 11 10 9 13 13 C 1.38238 * 119.99758 * 0.02562 * 12 11 10 14 14 S 1.76202 * 119.99986 * 179.97438 * 13 12 11 15 15 O 1.42097 * 106.40094 * 336.46563 * 14 13 12 16 16 O 1.42095 * 106.40063 * 203.54296 * 14 13 12 17 17 N 1.65600 * 107.21620 * 89.99990 * 14 13 12 18 18 C 1.46501 * 120.00172 * 65.00363 * 17 14 13 19 19 C 1.52997 * 109.47359 * 164.99829 * 18 17 14 20 20 H 1.08998 * 109.47226 * 304.99800 * 19 18 17 21 21 O 1.42900 * 109.47323 * 65.00025 * 19 18 17 22 22 C 1.53003 * 109.46913 * 184.99785 * 19 18 17 23 23 C 1.53786 * 113.61503 * 80.86227 * 22 19 18 24 24 C 1.54049 * 86.98426 * 140.01654 * 23 22 19 25 25 C 1.53781 * 113.61337 * 178.47021 * 22 19 18 26 26 C 1.38233 * 119.99807 * 0.25764 * 13 12 11 27 27 C 1.38230 * 119.99888 * 359.48587 * 26 13 12 28 28 H 0.96995 * 119.99608 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47446 * 60.00219 * 9 7 2 30 30 H 1.09003 * 109.47353 * 299.99717 * 9 7 2 31 31 H 1.08012 * 119.99854 * 0.02562 * 11 10 9 32 32 H 1.08000 * 120.00057 * 180.02562 * 12 11 10 33 33 H 0.97004 * 120.00517 * 244.99750 * 17 14 13 34 34 H 1.09005 * 109.47098 * 44.99476 * 18 17 14 35 35 H 1.09007 * 109.47021 * 285.00278 * 18 17 14 36 36 H 0.96698 * 114.00069 * 60.00040 * 21 19 18 37 37 H 1.09002 * 112.85017 * 309.66610 * 22 19 18 38 38 H 1.08992 * 113.61675 * 254.61398 * 23 22 19 39 39 H 1.09000 * 113.60973 * 25.51686 * 23 22 19 40 40 H 1.09005 * 113.62125 * 220.02158 * 24 23 22 41 41 H 1.08996 * 113.68970 * 89.12734 * 24 23 22 42 42 H 1.08999 * 113.61567 * 334.48261 * 25 22 19 43 43 H 1.08998 * 113.61196 * 105.38615 * 25 22 19 44 44 H 1.08002 * 119.99538 * 179.73271 * 26 13 12 45 45 H 1.08003 * 119.99901 * 180.25461 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6796 -4.1699 1.1977 12 6 3.5775 -5.2209 1.1977 13 6 4.0266 -5.7463 0.0006 14 16 5.1717 -7.0855 0.0006 15 8 5.8461 -7.0368 1.2504 16 8 5.8463 -7.0366 -1.2490 17 7 4.2879 -8.4860 0.0006 18 6 3.4436 -8.8194 -1.1493 19 6 3.0408 -10.2935 -1.0760 20 1 3.9356 -10.9113 -1.0002 21 8 2.2169 -10.5057 0.0721 22 6 2.2642 -10.6734 -2.3383 23 6 3.1644 -10.9737 -3.5485 24 6 2.1992 -12.1285 -3.8769 25 6 1.8432 -12.1518 -2.3811 26 6 3.5820 -5.2170 -1.1965 27 6 2.6801 -4.1695 -1.1965 28 1 -0.4849 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 2.3283 -3.7597 2.1331 32 1 3.9280 -5.6316 2.1331 33 1 4.3292 -9.0857 0.7619 34 1 3.9972 -8.6393 -2.0709 35 1 2.5487 -8.1970 -1.1356 36 1 1.4010 -9.9867 0.0720 37 1 1.4516 -9.9814 -2.5596 38 1 3.1694 -10.1808 -4.2964 39 1 4.1660 -11.3059 -3.2757 40 1 2.7013 -13.0331 -4.2204 41 1 1.3685 -11.8359 -4.5189 42 1 2.4843 -12.8057 -1.7898 43 1 0.7822 -12.3094 -2.1871 44 1 3.9363 -5.6247 -2.1318 45 1 2.3295 -3.7588 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885226283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:24 Heat of formation + Delta-G solvation = -98.964629 kcal Electronic energy + Delta-G solvation = -26883.957419 eV Core-core repulsion = 22993.216325 eV Total energy + Delta-G solvation = -3890.741094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85549 -38.83184 -37.20440 -36.92386 -35.77876 -34.63981 -33.70026 -31.58183 -30.60650 -29.56500 -27.45513 -26.00089 -25.14429 -23.75282 -22.45195 -22.19989 -20.92345 -20.05140 -19.38480 -17.89373 -17.57156 -17.08929 -16.50198 -16.46273 -15.68882 -15.57576 -15.13493 -15.00639 -14.69233 -14.39178 -14.30595 -13.83939 -13.52877 -13.22518 -13.13383 -12.84784 -12.81193 -12.44990 -12.25013 -12.04569 -12.02431 -11.94432 -11.75660 -11.72216 -11.51216 -11.31539 -10.98047 -10.93350 -10.87340 -10.63122 -10.55215 -10.50895 -10.04919 -9.83048 -9.72521 -9.58017 -8.62098 -8.56015 -8.41455 -6.19364 -4.24410 0.49157 1.29893 1.76399 3.02966 3.22836 3.29517 3.33938 3.74702 3.84907 4.08619 4.12709 4.24569 4.35682 4.39595 4.45301 4.51956 4.65861 4.78347 4.88216 5.13498 5.18288 5.21127 5.22604 5.26812 5.36705 5.38771 5.53762 5.57934 5.61071 5.69368 5.69679 5.81699 5.86778 5.88361 6.09338 6.21961 6.30206 6.47935 6.80633 6.82286 6.88290 7.26354 7.28403 7.40175 7.56089 7.75789 8.10856 8.80409 9.40726 10.90675 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002566 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.716738 B =10909.470922 C =11802.870507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.021 4.021 13 C -0.704 4.704 14 S 2.698 3.302 15 O -0.966 6.966 16 O -0.966 6.966 17 N -1.115 6.115 18 C 0.084 3.916 19 C 0.113 3.887 20 H 0.106 0.894 21 O -0.556 6.556 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.125 4.125 26 C -0.026 4.026 27 C -0.146 4.146 28 H 0.264 0.736 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.420 0.580 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.378 0.622 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -23.659 -4.521 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.026 3.974 11 C -0.165 4.165 12 C -0.040 4.040 13 C -0.794 4.794 14 S 2.791 3.209 15 O -0.956 6.956 16 O -0.956 6.956 17 N -0.875 5.875 18 C -0.043 4.043 19 C 0.052 3.948 20 H 0.124 0.876 21 O -0.361 6.361 22 C -0.166 4.166 23 C -0.174 4.174 24 C -0.182 4.182 25 C -0.162 4.162 26 C -0.045 4.045 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.255 0.745 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.225 0.775 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.283 -23.776 -4.521 24.578 hybrid contribution -0.755 1.639 0.106 1.807 sum 3.528 -22.137 -4.415 22.847 Atomic orbital electron populations 1.69944 1.06070 1.27147 1.49824 1.25004 0.94935 0.99408 0.94795 0.86477 0.79841 0.82755 0.78330 1.20436 1.21011 1.19688 1.20965 0.93101 0.89459 1.52035 0.92292 1.18539 0.92641 0.89534 0.99017 1.21120 0.92206 0.91984 0.92055 1.21258 0.99112 0.97181 0.98916 1.20779 0.93040 0.94437 0.95783 1.30322 1.25204 1.23937 0.99896 1.01545 0.73374 0.72662 0.73322 1.93569 1.71620 1.86484 1.43915 1.93552 1.70964 1.86511 1.44524 1.55478 1.64326 1.39687 1.28019 1.22029 0.95419 0.97763 0.89046 1.22158 0.93703 0.93963 0.84965 0.87575 1.86579 1.36609 1.69848 1.43101 1.23287 0.99727 0.98244 0.95370 1.22964 0.98190 0.98871 0.97345 1.22889 0.99599 0.98930 0.96829 1.22786 1.01638 0.95476 0.96332 1.20777 0.93336 0.94744 0.95684 1.21240 0.99119 0.97239 0.98872 0.92613 0.94739 0.94711 0.85331 0.85235 0.74514 0.89267 0.91103 0.77480 0.88501 0.90910 0.89728 0.91432 0.90152 0.89888 0.91428 0.85327 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.04 0.95 5.10 -29.04 -0.15 0.81 16 10 C 0.03 0.54 5.07 -104.63 -0.53 0.01 16 11 C -0.15 -2.68 9.70 -39.59 -0.38 -3.06 16 12 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 13 C -0.70 -10.82 5.95 -39.58 -0.24 -11.06 16 14 S 2.70 36.61 5.74 -107.50 -0.62 35.99 16 15 O -0.97 -15.60 17.28 -57.17 -0.99 -16.59 16 16 O -0.97 -15.18 16.75 -57.17 -0.96 -16.14 16 17 N -1.12 -10.84 5.96 -10.61 -0.06 -10.90 16 18 C 0.08 0.69 5.84 -4.04 -0.02 0.66 16 19 C 0.11 0.77 2.81 -26.73 -0.07 0.70 16 20 H 0.11 0.74 7.98 -51.93 -0.41 0.33 16 21 O -0.56 -4.15 12.96 -35.23 -0.46 -4.61 16 22 C -0.15 -0.87 3.31 -89.80 -0.30 -1.17 16 23 C -0.14 -0.81 7.59 -25.77 -0.20 -1.00 16 24 C -0.15 -0.81 8.09 -25.78 -0.21 -1.02 16 25 C -0.12 -0.74 7.47 -25.92 -0.19 -0.94 16 26 C -0.03 -0.41 9.52 -39.59 -0.38 -0.78 16 27 C -0.15 -2.63 9.70 -39.59 -0.38 -3.02 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 32 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 33 H 0.42 3.57 8.51 -34.48 -0.29 3.27 16 34 H 0.09 0.73 7.70 -51.93 -0.40 0.33 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.38 1.87 9.05 45.56 0.41 2.28 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.49 7.99 -51.93 -0.41 0.07 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.13 1.71 7.61 -52.49 -0.40 1.31 16 45 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -33.28 388.81 -11.44 -44.72 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.09 Total: 3.58 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: -3.84 Total: -33.28 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.67 Total: -35.54 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -2.40 Total: -37.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 36.61 SS G_CDS: -0.62 Total: 35.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.28 -11.44 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885226283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.244 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds