Wall clock time and date at job start Sat Apr 11 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48503 * 109.46960 * 270.00022 * 3 2 1 5 5 H 1.48494 * 109.47399 * 29.99756 * 3 2 1 6 6 H 1.48504 * 109.47411 * 150.00175 * 3 2 1 7 7 C 1.37877 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00503 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99670 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.38232 * 120.00008 * 90.00107 * 10 9 7 12 12 C 1.38231 * 120.00361 * 179.97438 * 11 10 9 13 13 C 1.38238 * 119.99758 * 0.02562 * 12 11 10 14 14 S 1.76202 * 119.99986 * 179.97438 * 13 12 11 15 15 O 1.42097 * 106.40094 * 336.46563 * 14 13 12 16 16 O 1.42095 * 106.40063 * 203.54296 * 14 13 12 17 17 N 1.65600 * 107.21620 * 89.99990 * 14 13 12 18 18 C 1.46501 * 120.00172 * 65.00363 * 17 14 13 19 19 C 1.52997 * 109.47359 * 164.99829 * 18 17 14 20 20 H 1.08998 * 109.47226 * 304.99800 * 19 18 17 21 21 O 1.42900 * 109.47323 * 65.00025 * 19 18 17 22 22 C 1.53003 * 109.46913 * 184.99785 * 19 18 17 23 23 C 1.53786 * 113.61503 * 80.86227 * 22 19 18 24 24 C 1.54049 * 86.98426 * 140.01654 * 23 22 19 25 25 C 1.53781 * 113.61337 * 178.47021 * 22 19 18 26 26 C 1.38233 * 119.99807 * 0.25764 * 13 12 11 27 27 C 1.38230 * 119.99888 * 359.48587 * 26 13 12 28 28 H 0.96995 * 119.99608 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47446 * 60.00219 * 9 7 2 30 30 H 1.09003 * 109.47353 * 299.99717 * 9 7 2 31 31 H 1.08012 * 119.99854 * 0.02562 * 11 10 9 32 32 H 1.08000 * 120.00057 * 180.02562 * 12 11 10 33 33 H 0.97004 * 120.00517 * 244.99750 * 17 14 13 34 34 H 1.09005 * 109.47098 * 44.99476 * 18 17 14 35 35 H 1.09007 * 109.47021 * 285.00278 * 18 17 14 36 36 H 0.96698 * 114.00069 * 60.00040 * 21 19 18 37 37 H 1.09002 * 112.85017 * 309.66610 * 22 19 18 38 38 H 1.08992 * 113.61675 * 254.61398 * 23 22 19 39 39 H 1.09000 * 113.60973 * 25.51686 * 23 22 19 40 40 H 1.09005 * 113.62125 * 220.02158 * 24 23 22 41 41 H 1.08996 * 113.68970 * 89.12734 * 24 23 22 42 42 H 1.08999 * 113.61567 * 334.48261 * 25 22 19 43 43 H 1.08998 * 113.61196 * 105.38615 * 25 22 19 44 44 H 1.08002 * 119.99538 * 179.73271 * 26 13 12 45 45 H 1.08003 * 119.99901 * 180.25461 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6796 -4.1699 1.1977 12 6 3.5775 -5.2209 1.1977 13 6 4.0266 -5.7463 0.0006 14 16 5.1717 -7.0855 0.0006 15 8 5.8461 -7.0368 1.2504 16 8 5.8463 -7.0366 -1.2490 17 7 4.2879 -8.4860 0.0006 18 6 3.4436 -8.8194 -1.1493 19 6 3.0408 -10.2935 -1.0760 20 1 3.9356 -10.9113 -1.0002 21 8 2.2169 -10.5057 0.0721 22 6 2.2642 -10.6734 -2.3383 23 6 3.1644 -10.9737 -3.5485 24 6 2.1992 -12.1285 -3.8769 25 6 1.8432 -12.1518 -2.3811 26 6 3.5820 -5.2170 -1.1965 27 6 2.6801 -4.1695 -1.1965 28 1 -0.4849 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 2.3283 -3.7597 2.1331 32 1 3.9280 -5.6316 2.1331 33 1 4.3292 -9.0857 0.7619 34 1 3.9972 -8.6393 -2.0709 35 1 2.5487 -8.1970 -1.1356 36 1 1.4010 -9.9867 0.0720 37 1 1.4516 -9.9814 -2.5596 38 1 3.1694 -10.1808 -4.2964 39 1 4.1660 -11.3059 -3.2757 40 1 2.7013 -13.0331 -4.2204 41 1 1.3685 -11.8359 -4.5189 42 1 2.4843 -12.8057 -1.7898 43 1 0.7822 -12.3094 -2.1871 44 1 3.9363 -5.6247 -2.1318 45 1 2.3295 -3.7588 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885226283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:23 Heat of formation + Delta-G solvation = -122.519831 kcal Electronic energy + Delta-G solvation = -26884.978849 eV Core-core repulsion = 22993.216325 eV Total energy + Delta-G solvation = -3891.762524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35903 -40.22894 -38.35812 -37.52080 -36.97755 -35.61016 -35.36019 -33.32039 -31.96214 -30.17291 -29.24898 -26.45898 -25.71828 -25.59640 -23.74049 -22.83325 -22.46103 -20.67269 -20.30417 -19.01711 -18.61373 -18.48866 -17.85587 -17.21521 -16.86000 -16.61335 -16.15355 -16.00491 -15.96283 -15.49376 -15.28442 -15.15824 -14.63773 -14.45140 -14.05181 -13.95948 -13.84524 -13.41510 -13.38073 -13.29455 -13.25192 -13.21253 -13.15599 -12.70262 -12.67954 -12.64984 -12.23861 -12.14415 -12.03956 -11.84534 -11.68204 -11.44305 -11.31234 -11.08665 -10.65963 -10.63587 -10.44717 -9.96453 -9.95037 -8.27904 -6.40461 -0.62477 -0.06727 0.39684 1.37755 1.38298 1.49582 2.01035 2.34204 2.56470 2.82419 3.04866 3.28890 3.37337 3.65665 3.77137 3.88659 3.92746 3.97911 3.98769 4.14791 4.15916 4.22932 4.34384 4.47583 4.48888 4.58303 4.76371 4.81459 4.91269 4.92768 4.93591 4.94454 5.10518 5.12124 5.14415 5.20256 5.24779 5.25811 5.33420 5.40993 5.65031 5.66566 5.86274 5.92202 6.07657 6.09449 6.71428 6.86117 7.28679 8.82138 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002566 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.716738 B =10909.470922 C =11802.870507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.003 4.003 11 C -0.156 4.156 12 C -0.019 4.019 13 C -0.700 4.700 14 S 2.726 3.274 15 O -0.988 6.988 16 O -0.982 6.982 17 N -1.100 6.100 18 C 0.075 3.925 19 C 0.120 3.880 20 H 0.106 0.894 21 O -0.568 6.568 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.019 4.019 27 C -0.153 4.153 28 H 0.267 0.733 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.128 0.872 32 H 0.153 0.847 33 H 0.428 0.572 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.388 0.612 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.158 0.842 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -24.931 -4.962 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.011 3.989 10 C -0.003 4.003 11 C -0.175 4.175 12 C -0.038 4.038 13 C -0.787 4.787 14 S 2.817 3.183 15 O -0.979 6.979 16 O -0.972 6.972 17 N -0.863 5.863 18 C -0.051 4.051 19 C 0.059 3.941 20 H 0.124 0.876 21 O -0.375 6.375 22 C -0.162 4.162 23 C -0.177 4.177 24 C -0.182 4.182 25 C -0.163 4.163 26 C -0.038 4.038 27 C -0.172 4.172 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.266 0.734 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.237 0.763 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.175 0.825 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.488 -25.035 -4.957 26.105 hybrid contribution -1.129 1.875 0.232 2.201 sum 4.359 -23.161 -4.725 24.036 Atomic orbital electron populations 1.70049 1.07496 1.28142 1.50749 1.25852 0.95764 1.02923 0.94382 0.85474 0.78565 0.78578 0.78641 1.19602 1.20338 1.19320 1.21286 0.93035 0.91062 1.51737 0.92871 1.18262 0.92988 0.90706 0.96898 1.20814 0.93266 0.92270 0.93951 1.21302 0.99902 0.98057 0.98241 1.21006 0.92085 0.93458 0.97246 1.30773 1.24235 1.24206 0.99462 1.00728 0.72792 0.72549 0.72273 1.93538 1.72421 1.86938 1.44964 1.93534 1.71480 1.86889 1.45268 1.55136 1.64186 1.37999 1.28978 1.22296 0.95525 0.98918 0.88390 1.22092 0.93799 0.92925 0.85240 0.87630 1.86559 1.37309 1.70269 1.43365 1.23269 0.99774 0.98318 0.94872 1.23004 0.98326 0.99018 0.97343 1.22896 0.99645 0.98988 0.96648 1.22776 1.01572 0.95399 0.96536 1.21045 0.92076 0.93526 0.97131 1.21305 0.99768 0.98008 0.98134 0.92369 0.96711 0.96912 0.85416 0.82943 0.73413 0.88846 0.90122 0.76257 0.87907 0.90848 0.89601 0.91187 0.89875 0.90266 0.91410 0.82453 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.84 13.29 21.45 0.28 -53.55 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.53 -29.48 9.09 25.60 0.23 -29.25 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.05 2.45 5.10 29.10 0.15 2.59 16 10 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 11 C -0.16 -5.75 9.70 22.27 0.22 -5.54 16 12 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 13 C -0.70 -20.00 5.95 22.27 0.13 -19.87 16 14 S 2.73 67.07 5.74 -56.49 -0.32 66.74 16 15 O -0.99 -29.64 17.28 -128.00 -2.21 -31.85 16 16 O -0.98 -28.23 16.75 -128.00 -2.14 -30.37 16 17 N -1.10 -18.39 5.96 -187.48 -1.12 -19.50 16 18 C 0.07 1.02 5.84 86.38 0.50 1.52 16 19 C 0.12 1.37 2.81 30.59 0.09 1.45 16 20 H 0.11 1.23 7.98 -2.39 -0.02 1.22 16 21 O -0.57 -7.22 12.96 -148.98 -1.93 -9.15 16 22 C -0.14 -1.40 3.31 -10.26 -0.03 -1.44 16 23 C -0.14 -1.39 7.59 31.21 0.24 -1.15 16 24 C -0.14 -1.38 8.09 31.21 0.25 -1.13 16 25 C -0.13 -1.28 7.47 31.12 0.23 -1.05 16 26 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 27 C -0.15 -5.48 9.70 22.27 0.22 -5.27 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.01 0.78 8.09 -2.39 -0.02 0.76 16 30 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 31 H 0.13 4.58 8.06 -2.90 -0.02 4.56 16 32 H 0.15 3.96 7.62 -2.91 -0.02 3.94 16 33 H 0.43 6.10 8.51 -96.74 -0.82 5.28 16 34 H 0.09 1.24 7.70 -2.38 -0.02 1.22 16 35 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.39 2.99 9.05 -74.06 -0.67 2.32 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.83 7.99 -2.39 -0.02 0.81 16 40 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 0.88 8.10 -2.39 -0.02 0.86 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.16 3.71 7.61 -2.91 -0.02 3.68 16 45 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -71.03 388.81 -2.90 -73.92 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.49 Total: 17.38 kcal Atomic # 6 Polarization: -62.05 SS G_CDS: 3.01 Total: -59.04 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -0.83 Total: -73.06 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: -6.29 Total: -71.37 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 67.07 SS G_CDS: -0.32 Total: 66.74 kcal Total: -71.03 -2.90 -73.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885226283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.597 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds