Wall clock time and date at job start Sat Apr 11 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99690 * 3 2 1 6 6 H 1.48498 * 109.47360 * 59.99443 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38233 * 120.00109 * 269.72485 * 10 9 7 12 12 C 1.38238 * 119.99754 * 179.76611 * 11 10 9 13 13 C 1.38234 * 120.00016 * 0.50732 * 12 11 10 14 14 S 1.76198 * 120.00052 * 179.72466 * 13 12 11 15 15 O 1.42099 * 106.40142 * 23.56240 * 14 13 12 16 16 O 1.42106 * 106.39975 * 156.48479 * 14 13 12 17 17 N 1.65598 * 107.21623 * 270.02104 * 14 13 12 18 18 C 1.46503 * 119.99911 * 65.00078 * 17 14 13 19 19 H 1.08998 * 109.47157 * 25.00117 * 18 17 14 20 20 C 1.52991 * 109.47487 * 264.99817 * 18 17 14 21 21 O 1.42902 * 109.47282 * 295.00195 * 20 18 17 22 22 C 1.53003 * 109.47054 * 144.99756 * 18 17 14 23 23 C 1.53786 * 113.61663 * 279.13601 * 22 18 17 24 24 C 1.53951 * 87.02300 * 220.05033 * 23 22 18 25 25 C 1.53781 * 113.61265 * 181.53179 * 22 18 17 26 26 C 1.38238 * 120.00063 * 359.74632 * 13 12 11 27 27 C 1.38235 * 120.00108 * 0.02562 * 26 13 12 28 28 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 30 30 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 31 31 H 1.08004 * 119.99934 * 0.02562 * 11 10 9 32 32 H 1.07999 * 119.99924 * 180.23621 * 12 11 10 33 33 H 0.96998 * 120.00693 * 244.99789 * 17 14 13 34 34 H 1.09006 * 109.47274 * 54.99781 * 20 18 17 35 35 H 1.08998 * 109.47788 * 175.00232 * 20 18 17 36 36 H 0.96697 * 114.00345 * 179.97438 * 21 20 18 37 37 H 1.09001 * 112.85183 * 50.33329 * 22 18 17 38 38 H 1.09001 * 113.61182 * 334.57444 * 23 22 18 39 39 H 1.09000 * 113.61449 * 105.46890 * 23 22 18 40 40 H 1.08999 * 113.53537 * 270.81778 * 24 23 22 41 41 H 1.08994 * 113.74338 * 139.94374 * 24 23 22 42 42 H 1.09003 * 113.61649 * 254.52522 * 25 22 18 43 43 H 1.08993 * 113.61769 * 25.43129 * 25 22 18 44 44 H 1.08000 * 120.00578 * 179.97438 * 26 13 12 45 45 H 1.07999 * 120.00165 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6751 -4.1737 -1.1966 12 6 3.5772 -5.2212 -1.1965 13 6 4.0263 -5.7465 0.0006 14 16 5.1705 -7.0865 0.0007 15 8 5.8451 -7.0381 -1.2490 16 8 5.8450 -7.0380 1.2506 17 7 4.2858 -8.4864 0.0008 18 6 3.4413 -8.8192 -1.1491 19 1 3.8291 -8.3251 -2.0399 20 6 2.0106 -8.3456 -0.8853 21 8 1.4611 -9.0779 0.2119 22 6 3.4456 -10.3341 -1.3636 23 6 4.6841 -10.8460 -2.1179 24 6 3.7350 -11.7995 -2.8663 25 6 2.6145 -10.7870 -2.5755 26 6 3.5775 -5.2208 1.1978 27 6 2.6791 -4.1702 1.1978 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8904 31 1 2.3211 -3.7659 -2.1319 32 1 3.9276 -5.6321 -2.1318 33 1 4.3268 -9.0860 0.7621 34 1 2.0183 -7.2824 -0.6449 35 1 1.4027 -8.5127 -1.7744 36 1 0.5540 -8.8292 0.4360 37 1 3.2283 -10.8913 -0.4523 38 1 5.1451 -10.0957 -2.7603 39 1 5.4040 -11.3575 -1.4790 40 1 3.5977 -12.7582 -2.3661 41 1 3.9644 -11.9043 -3.9266 42 1 1.6659 -11.2512 -2.3056 43 1 2.5085 -10.0207 -3.3433 44 1 3.9280 -5.6315 2.1332 45 1 2.3281 -3.7598 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885292707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:30 Heat of formation + Delta-G solvation = -94.912479 kcal Electronic energy + Delta-G solvation = -27712.303389 eV Core-core repulsion = 23821.738009 eV Total energy + Delta-G solvation = -3890.565380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.68387 -38.85171 -37.13890 -36.83378 -35.75725 -34.58121 -33.71030 -31.59510 -30.62112 -29.15743 -27.46697 -25.98162 -25.25594 -23.74930 -22.39621 -21.72939 -20.93162 -20.10800 -19.15700 -17.91579 -17.44027 -17.22562 -16.58535 -16.46119 -15.67289 -15.44164 -15.10773 -14.90920 -14.42659 -14.39213 -14.16946 -13.93983 -13.66889 -13.14606 -12.86895 -12.70879 -12.64454 -12.40963 -12.25780 -12.02894 -11.98177 -11.84161 -11.72221 -11.68497 -11.52353 -10.99237 -10.95640 -10.89518 -10.65060 -10.54091 -10.52516 -10.45821 -10.11530 -9.76547 -9.69580 -9.46566 -8.62665 -8.57119 -8.40766 -6.20272 -4.25216 0.51555 1.29427 1.75274 3.04832 3.21183 3.29431 3.34699 3.76311 4.04344 4.07953 4.27023 4.35252 4.40108 4.41917 4.52821 4.63961 4.90615 5.01562 5.09368 5.14313 5.19429 5.20394 5.24625 5.45337 5.50324 5.51944 5.59988 5.67488 5.68464 5.74432 5.78122 5.86191 5.87350 6.06452 6.20754 6.29079 6.29489 6.47436 6.80030 6.86188 6.91192 7.25325 7.38992 7.46258 7.55015 7.75120 8.10007 8.79902 9.40103 10.89794 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018677 B = 0.002856 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.821468 B = 9803.135988 C =10405.465987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.028 4.028 13 C -0.703 4.703 14 S 2.695 3.305 15 O -0.965 6.965 16 O -0.966 6.966 17 N -1.106 6.106 18 C 0.163 3.837 19 H 0.103 0.897 20 C 0.052 3.948 21 O -0.564 6.564 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.019 4.019 27 C -0.145 4.145 28 H 0.264 0.736 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.419 0.581 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.378 0.622 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -22.295 -3.424 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.026 3.974 11 C -0.165 4.165 12 C -0.047 4.047 13 C -0.793 4.793 14 S 2.787 3.213 15 O -0.955 6.955 16 O -0.957 6.957 17 N -0.864 5.864 18 C 0.055 3.945 19 H 0.121 0.879 20 C -0.027 4.027 21 O -0.369 6.369 22 C -0.123 4.123 23 C -0.179 4.179 24 C -0.180 4.180 25 C -0.171 4.171 26 C -0.038 4.038 27 C -0.164 4.164 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.225 0.775 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.604 -22.282 -3.597 23.035 hybrid contribution -0.902 1.522 0.370 1.808 sum 3.703 -20.759 -3.227 21.333 Atomic orbital electron populations 1.69955 1.06068 1.27041 1.49929 1.25003 0.94933 0.99420 0.94798 0.86427 0.80166 0.83090 0.77767 1.19555 1.20784 1.20787 1.21007 0.93143 0.89449 1.51889 0.92236 1.18541 0.92639 0.89580 0.98982 1.21112 0.92236 0.91987 0.92036 1.21235 0.99177 0.97191 0.98857 1.20766 0.93429 0.94867 0.95640 1.30354 1.25046 1.23975 0.99886 1.01646 0.73466 0.72780 0.73392 1.93556 1.70928 1.86561 1.44491 1.93567 1.71702 1.86521 1.43872 1.55496 1.63665 1.39300 1.27912 1.20971 0.88574 0.96820 0.88089 0.87900 1.22831 0.94359 0.95871 0.89655 1.86418 1.33619 1.64678 1.52228 1.22681 0.97179 0.93777 0.98630 1.23071 0.96386 0.99255 0.99163 1.22831 0.96929 0.97659 1.00600 1.22900 0.97745 0.98973 0.97454 1.20766 0.92950 0.94317 0.95775 1.21252 0.99127 0.97157 0.98887 0.92672 0.94758 0.94743 0.85380 0.85388 0.74640 0.92335 0.92644 0.77491 0.88022 0.89578 0.91434 0.90335 0.91423 0.91206 0.89968 0.85283 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -13.85 9.09 -34.44 -0.31 -14.16 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.04 0.94 5.11 -29.03 -0.15 0.79 16 10 C 0.03 0.53 5.07 -104.62 -0.53 0.00 16 11 C -0.15 -2.58 9.70 -39.58 -0.38 -2.96 16 12 C -0.03 -0.43 8.70 -39.58 -0.34 -0.77 16 13 C -0.70 -10.76 4.95 -39.58 -0.20 -10.96 16 14 S 2.69 37.42 5.72 -107.50 -0.61 36.80 16 15 O -0.97 -15.29 16.62 -57.17 -0.95 -16.24 16 16 O -0.97 -15.91 17.28 -57.17 -0.99 -16.90 16 17 N -1.11 -11.53 5.42 -4.89 -0.03 -11.56 16 18 C 0.16 1.53 2.50 -67.93 -0.17 1.36 16 19 H 0.10 0.95 7.34 -51.93 -0.38 0.57 16 20 C 0.05 0.48 6.62 37.15 0.25 0.73 16 21 O -0.56 -5.05 13.01 -35.23 -0.46 -5.51 16 22 C -0.10 -0.83 2.93 -89.80 -0.26 -1.10 16 23 C -0.14 -1.13 7.65 -25.83 -0.20 -1.33 16 24 C -0.14 -0.97 8.09 -25.83 -0.21 -1.18 16 25 C -0.13 -0.93 6.85 -25.92 -0.18 -1.11 16 26 C -0.02 -0.30 9.52 -39.58 -0.38 -0.68 16 27 C -0.15 -2.63 9.70 -39.58 -0.38 -3.02 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.13 2.15 8.06 -52.48 -0.42 1.72 16 32 H 0.13 1.67 7.62 -52.49 -0.40 1.27 16 33 H 0.42 3.79 8.84 -34.47 -0.30 3.48 16 34 H 0.06 0.62 6.17 -51.93 -0.32 0.30 16 35 H 0.06 0.42 7.67 -51.93 -0.40 0.03 16 36 H 0.38 2.22 9.12 45.56 0.42 2.64 16 37 H 0.10 0.86 8.02 -51.93 -0.42 0.44 16 38 H 0.09 0.74 7.99 -51.93 -0.41 0.32 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 44 H 0.13 1.84 7.62 -52.49 -0.40 1.44 16 45 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -32.94 383.49 -11.05 -43.98 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.96 Total: 5.04 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: -3.55 Total: -32.83 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.71 Total: -36.09 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -2.40 Total: -38.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 37.42 SS G_CDS: -0.61 Total: 36.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.94 -11.05 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885292707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.930 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds