Wall clock time and date at job start Sat Apr 11 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48506 * 109.47201 * 270.00133 * 3 2 1 5 5 H 1.48507 * 109.47113 * 29.99542 * 3 2 1 6 6 H 1.48504 * 109.47471 * 149.99828 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00240 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63538 * 298.31185 * 9 7 2 11 11 C 1.55156 * 110.71965 * 61.44641 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84937 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65598 * 125.62816 * 204.06537 * 13 12 11 15 15 O 1.42104 * 104.27651 * 26.07690 * 14 13 12 16 16 O 1.42097 * 104.27618 * 153.92925 * 14 13 12 17 17 C 1.81398 * 104.45183 * 270.00176 * 14 13 12 18 18 C 1.53002 * 109.46904 * 179.97438 * 17 14 13 19 19 C 1.53001 * 109.47100 * 180.02562 * 18 17 14 20 20 C 1.50696 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.38233 * 119.99783 * 269.72667 * 20 19 18 22 22 C 1.38243 * 119.99618 * 179.80905 * 21 20 19 23 23 C 1.38234 * 120.00355 * 0.40116 * 22 21 20 24 24 C 1.38242 * 119.99454 * 359.84989 * 23 22 21 25 25 C 1.38231 * 120.00234 * 359.96140 * 24 23 22 26 26 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 27 27 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00549 * 61.68763 * 10 9 7 29 29 H 1.09002 * 111.00677 * 271.94521 * 11 9 7 30 30 H 1.09002 * 111.00564 * 35.75779 * 11 9 7 31 31 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 32 32 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 33 33 H 1.08998 * 109.46798 * 299.99699 * 17 14 13 34 34 H 1.08998 * 109.46860 * 60.00368 * 17 14 13 35 35 H 1.08997 * 109.47571 * 299.99840 * 18 17 14 36 36 H 1.08998 * 109.47049 * 60.00499 * 18 17 14 37 37 H 1.09002 * 109.47225 * 300.00265 * 19 18 17 38 38 H 1.08995 * 109.47267 * 59.99755 * 19 18 17 39 39 H 1.07997 * 120.00444 * 359.97438 * 21 20 19 40 40 H 1.08006 * 119.99525 * 180.22882 * 22 21 20 41 41 H 1.07993 * 120.00375 * 179.83476 * 23 22 21 42 42 H 1.08000 * 119.99668 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99743 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.88206 * 239.55467 * 26 13 12 45 45 H 1.09007 * 109.88177 * 118.39340 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1776 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2564 -6.1205 -1.4810 15 8 1.6420 -6.4022 -2.7310 16 8 3.6583 -5.9091 -1.3850 17 6 1.7027 -7.3004 -0.2193 18 6 2.2569 -8.6895 -0.5418 19 6 1.7894 -9.6848 0.5220 20 6 2.3358 -11.0529 0.2046 21 6 1.6083 -11.9208 -0.5880 22 6 2.1113 -13.1744 -0.8823 23 6 3.3380 -13.5631 -0.3773 24 6 4.0631 -12.6969 0.4197 25 6 3.5619 -11.4420 0.7108 26 6 2.2231 -3.6910 -0.1253 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2287 -1.9338 1.2625 29 1 -0.6067 -2.1829 -1.1206 30 1 0.8738 -2.1831 -2.1362 31 1 -0.5068 -4.5599 -0.7732 32 1 0.0674 -4.4316 -2.4640 33 1 2.0642 -6.9827 0.7587 34 1 0.6134 -7.3374 -0.2097 35 1 1.8952 -9.0070 -1.5198 36 1 3.3463 -8.6528 -0.5517 37 1 2.1508 -9.3676 1.5002 38 1 0.7001 -9.7214 0.5316 39 1 0.6482 -11.6187 -0.9795 40 1 1.5445 -13.8511 -1.5047 41 1 3.7297 -14.5433 -0.6050 42 1 5.0212 -13.0007 0.8146 43 1 4.1282 -10.7655 1.3338 44 1 3.1677 -3.3553 -0.5532 45 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916614653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:43 Heat of formation + Delta-G solvation = -126.421194 kcal Electronic energy + Delta-G solvation = -26998.316320 eV Core-core repulsion = 23106.384620 eV Total energy + Delta-G solvation = -3891.931700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18746 -39.74101 -38.21672 -37.06824 -36.27920 -36.02191 -34.15017 -32.23814 -31.74586 -30.82569 -29.97744 -27.75813 -26.68581 -23.74172 -23.44372 -23.01029 -21.76564 -21.57315 -19.90263 -19.19448 -18.49169 -17.87237 -17.35994 -17.22074 -16.87121 -16.49245 -16.13789 -15.95584 -15.87262 -15.36162 -15.03858 -14.65226 -14.51401 -14.23745 -14.11498 -13.91287 -13.66897 -13.38916 -13.33232 -13.26349 -13.22591 -13.15985 -13.09121 -12.91572 -12.75791 -12.60818 -12.26986 -12.14603 -12.06708 -12.01157 -11.91973 -11.66449 -11.54139 -11.14341 -10.59876 -10.07464 -9.86234 -9.80332 -9.57877 -8.21191 -6.34543 -0.79371 0.45661 0.51829 1.42067 1.45220 1.53677 1.63242 2.40673 2.81237 2.91816 3.01370 3.09436 3.45354 3.73025 3.78426 4.01207 4.07338 4.09902 4.14999 4.21537 4.28630 4.33346 4.37953 4.48542 4.58149 4.64391 4.67122 4.68450 4.73497 4.76153 4.96298 5.01357 5.08655 5.20815 5.22391 5.22457 5.28899 5.37909 5.58534 5.58842 5.59730 5.64946 5.73798 5.81935 6.14437 6.15114 6.69239 7.35610 7.45233 8.84379 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028857 B = 0.002223 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.079622 B =12595.290058 C =12684.368980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.034 3.966 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.054 0.946 9 C 0.235 3.765 10 O -0.587 6.587 11 C -0.126 4.126 12 C 0.118 3.882 13 N -1.014 6.014 14 S 2.621 3.379 15 O -0.986 6.986 16 O -0.992 6.992 17 C -0.602 4.602 18 C -0.112 4.112 19 C -0.069 4.069 20 C -0.099 4.099 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.133 4.133 26 C 0.141 3.859 27 H 0.270 0.730 28 H 0.378 0.622 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.061 0.939 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -22.948 1.405 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.167 4.167 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.600 4.600 8 H 0.072 0.928 9 C 0.194 3.806 10 O -0.395 6.395 11 C -0.166 4.166 12 C -0.006 4.006 13 N -0.851 5.851 14 S 2.721 3.279 15 O -0.977 6.977 16 O -0.982 6.982 17 C -0.735 4.735 18 C -0.152 4.152 19 C -0.107 4.107 20 C -0.099 4.099 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.151 4.151 26 C 0.015 3.985 27 H 0.079 0.921 28 H 0.228 0.772 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.079 0.921 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.444 -23.522 0.686 23.576 hybrid contribution -0.196 1.648 0.321 1.690 sum 1.248 -21.874 1.007 21.933 Atomic orbital electron populations 1.69760 1.06490 1.28181 1.50097 1.25593 0.95882 1.01915 0.93305 0.85597 0.78747 0.79412 0.78057 1.20449 1.20428 1.19907 1.21833 0.93580 0.92038 1.52586 0.92812 1.19600 0.87487 0.90866 0.82606 1.86071 1.51721 1.56231 1.45511 1.23082 1.01306 0.92988 0.99211 1.22153 0.83434 0.95211 0.99844 1.58434 1.29551 1.33908 1.63225 1.04512 0.73251 0.73882 0.76246 1.93518 1.78257 1.84907 1.41007 1.93524 1.31926 1.84797 1.88002 1.30467 1.14226 1.10415 1.18437 1.21418 1.01684 0.90796 1.01257 1.20563 1.01989 0.89543 0.98644 1.20083 0.95348 0.96284 0.98164 1.21370 1.00695 0.94322 0.98501 1.21470 0.96522 0.96645 1.00031 1.21483 0.95238 1.00588 0.97899 1.21458 1.00649 0.94054 0.98573 1.21365 0.95833 0.97181 1.00691 1.21598 0.95574 0.88919 0.92382 0.92080 0.77235 0.90605 0.93521 0.90197 0.90376 0.82920 0.82305 0.90024 0.90409 0.89432 0.89087 0.84852 0.84357 0.84328 0.84494 0.85123 0.92115 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.22 10.67 21.45 0.23 -45.99 16 2 C 0.03 1.76 5.28 84.65 0.45 2.20 16 3 Si 0.96 41.53 29.54 68.60 2.03 43.56 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.56 -29.47 8.21 25.60 0.21 -29.26 16 8 H 0.05 2.85 7.57 -2.91 -0.02 2.83 16 9 C 0.24 11.12 0.85 -10.35 -0.01 11.11 16 10 O -0.59 -27.89 13.08 -148.98 -1.95 -29.84 16 11 C -0.13 -5.54 5.46 31.98 0.17 -5.36 16 12 C 0.12 4.22 7.07 86.85 0.61 4.84 16 13 N -1.01 -36.35 3.62 -506.33 -1.83 -38.18 16 14 S 2.62 81.53 5.65 -56.49 -0.32 81.21 16 15 O -0.99 -35.09 17.28 -127.65 -2.21 -37.30 16 16 O -0.99 -37.40 17.60 -127.65 -2.25 -39.65 16 17 C -0.60 -11.84 6.18 71.98 0.44 -11.39 16 18 C -0.11 -2.06 5.20 30.60 0.16 -1.90 16 19 C -0.07 -1.04 5.35 29.85 0.16 -0.88 16 20 C -0.10 -1.68 5.13 -19.87 -0.10 -1.78 16 21 C -0.13 -2.10 9.70 22.27 0.22 -1.89 16 22 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 25 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 26 C 0.14 5.87 6.25 86.73 0.54 6.41 16 27 H 0.27 13.15 8.31 -92.70 -0.77 12.37 16 28 H 0.38 18.34 7.46 -74.06 -0.55 17.79 16 29 H 0.08 3.43 7.54 -2.39 -0.02 3.41 16 30 H 0.05 2.18 8.04 -2.39 -0.02 2.16 16 31 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.08 2.62 7.67 -2.39 -0.02 2.60 16 33 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.16 2.41 8.14 -2.39 -0.02 2.40 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 39 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 44 H 0.06 2.68 7.66 -2.39 -0.02 2.66 16 45 H 0.07 2.66 8.07 -2.38 -0.02 2.64 16 Total: -1.00 -65.82 382.78 -2.13 -67.95 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.43 Total: 33.20 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 3.74 Total: -34.96 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -1.61 Total: -84.17 kcal Atomic # 8 Polarization: -100.38 SS G_CDS: -6.40 Total: -106.78 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 81.53 SS G_CDS: -0.32 Total: 81.21 kcal Total: -65.82 -2.13 -67.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916614653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.471 kcal (2) G-P(sol) polarization free energy of solvation -65.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds