Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99771 * 2 1 4 4 C 1.50695 * 109.46816 * 275.55545 * 3 2 1 5 5 H 1.07996 * 120.00397 * 4.95852 * 4 3 2 6 6 C 1.37887 * 119.99892 * 184.95962 * 4 3 2 7 7 N 1.31510 * 120.00018 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99597 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46727 * 90.00728 * 8 6 4 10 10 H 1.48497 * 109.46896 * 209.99763 * 8 6 4 11 11 H 1.48498 * 109.47283 * 330.00547 * 8 6 4 12 12 S 1.65595 * 120.00194 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.40286 * 159.52034 * 12 2 1 14 14 O 1.42102 * 106.39991 * 26.60390 * 12 2 1 15 15 N 1.65590 * 107.22196 * 273.06116 * 12 2 1 16 16 C 1.46499 * 119.99916 * 62.73317 * 15 12 2 17 17 C 1.53008 * 109.47459 * 164.42388 * 16 15 12 18 18 N 1.46498 * 109.47422 * 180.02562 * 17 16 15 19 19 C 1.38584 * 120.00015 * 180.02562 * 18 17 16 20 20 C 1.39356 * 119.53173 * 359.97438 * 19 18 17 21 21 C 1.36886 * 119.38720 * 179.97438 * 20 19 18 22 22 C 1.40360 * 118.48496 * 359.97438 * 21 20 19 23 23 C 1.43199 * 120.47974 * 180.02562 * 22 21 20 24 24 N 9.93284 * 123.19054 * 153.78627 * 15 1 2 25 25 C 1.39575 * 119.03915 * 359.97438 * 22 21 20 26 26 N 1.31713 * 120.51106 * 0.02562 * 25 22 21 27 27 H 1.09001 * 109.46871 * 269.99738 * 1 2 3 28 28 H 1.08998 * 109.47281 * 29.99647 * 1 2 3 29 29 H 1.08997 * 109.46839 * 150.00455 * 1 2 3 30 30 H 1.09002 * 109.47016 * 35.55663 * 3 2 1 31 31 H 1.08999 * 109.46842 * 155.55322 * 3 2 1 32 32 H 0.97008 * 119.99614 * 180.02562 * 7 6 4 33 33 H 0.96999 * 120.00548 * 242.73827 * 15 12 2 34 34 H 1.09004 * 109.47386 * 44.42487 * 16 15 12 35 35 H 1.08998 * 109.47497 * 284.42043 * 16 15 12 36 36 H 1.08996 * 109.46824 * 59.99395 * 17 16 15 37 37 H 1.08998 * 109.46484 * 300.00275 * 17 16 15 38 38 H 0.97002 * 120.00078 * 359.97438 * 18 17 16 39 39 H 1.07996 * 120.30844 * 0.02562 * 20 19 18 40 40 H 1.07999 * 120.76290 * 179.72711 * 21 20 19 41 41 H 1.07997 * 119.74744 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3295 1.7725 -1.4141 5 1 1.8419 1.2475 -2.2221 6 6 3.0729 2.9038 -1.6764 7 7 3.1877 3.3437 -2.9104 8 14 3.9158 3.8123 -0.2786 9 1 5.2812 3.2622 -0.0830 10 1 4.0071 5.2567 -0.6111 11 1 3.1292 3.6402 0.9691 12 16 2.2931 -1.4341 0.0006 13 8 3.5996 -1.1432 -0.4764 14 8 1.4381 -2.3913 -0.6094 15 7 2.4651 -1.9002 1.5803 16 6 1.2803 -2.1932 2.3906 17 6 1.6989 -2.9572 3.6485 18 7 0.5141 -3.2507 4.4586 19 6 0.6453 -3.9397 5.6539 20 6 1.9088 -4.3490 6.0757 21 6 2.0350 -5.0289 7.2571 22 6 0.8771 -5.2900 8.0062 23 6 0.9599 -5.9974 9.2485 24 7 1.0250 -6.5616 10.2324 25 6 -0.3560 -4.8492 7.5232 26 7 -0.4327 -4.1980 6.3809 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6551 2.0014 0.5976 31 1 3.1894 1.1157 0.4253 32 1 3.7110 4.1394 -3.0949 33 1 3.3502 -1.9791 1.9691 34 1 0.5849 -2.8006 1.8113 35 1 0.7959 -1.2597 2.6770 36 1 2.3943 -2.3498 4.2278 37 1 2.1833 -3.8907 3.3622 38 1 -0.3621 -2.9622 4.1587 39 1 2.7805 -4.1313 5.4765 40 1 3.0029 -5.3604 7.6030 41 1 -1.2543 -5.0442 8.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917879993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = 4.534866 kcal Electronic energy + Delta-G solvation = -25873.297444 eV Core-core repulsion = 21915.796832 eV Total energy + Delta-G solvation = -3957.500611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90998 -37.74102 -36.87278 -36.64358 -35.75403 -35.36253 -34.81181 -33.16728 -32.45543 -30.96273 -28.48887 -28.20062 -25.28759 -24.69026 -23.86632 -22.72025 -21.99699 -19.44063 -19.24525 -18.36846 -17.64409 -17.19521 -17.12612 -16.63931 -16.22114 -15.87308 -15.24705 -15.00164 -14.89582 -14.81529 -14.29500 -14.22056 -13.85981 -13.67547 -13.65715 -13.25854 -13.24098 -12.83377 -12.64180 -12.56606 -12.42548 -12.37079 -11.86808 -11.68557 -11.52441 -11.41406 -11.32726 -10.78233 -10.73722 -10.54216 -10.41685 -10.35019 -10.08686 -9.70195 -9.60084 -8.65404 -8.33020 -8.25010 -6.14680 -4.14821 0.34165 0.77976 0.94474 2.29946 2.43678 2.62031 3.21665 3.26857 3.28808 3.35362 3.48801 3.55094 3.89795 4.02738 4.19850 4.27605 4.32535 4.39441 4.55377 4.70861 4.81983 4.88180 5.14796 5.15536 5.18924 5.34898 5.35229 5.43420 5.49889 5.65920 5.79104 5.83620 6.09723 6.31647 6.35148 6.62363 6.79623 6.89785 6.98783 7.14200 7.29006 7.50545 7.52689 8.41501 8.89647 9.44195 10.98682 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002084 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.289257 B =13429.708496 C =13872.115563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.989 5.989 3 C 0.228 3.772 4 C -0.537 4.537 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.266 1.266 12 S 2.784 3.216 13 O -0.958 6.958 14 O -0.989 6.989 15 N -1.133 6.133 16 C 0.110 3.890 17 C 0.115 3.885 18 N -0.709 5.709 19 C 0.433 3.567 20 C -0.239 4.239 21 C 0.017 3.983 22 C -0.157 4.157 23 C 0.267 3.733 24 N -0.430 5.430 25 C 0.212 3.788 26 N -0.543 5.543 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.414 0.586 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.412 0.588 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 -13.700 19.096 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.831 5.831 3 C 0.105 3.895 4 C -0.576 4.576 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.791 3.209 13 O -0.941 6.941 14 O -0.973 6.973 15 N -0.892 5.892 16 C -0.018 4.018 17 C -0.011 4.011 18 N -0.339 5.339 19 C 0.195 3.805 20 C -0.264 4.264 21 C -0.010 4.010 22 C -0.166 4.166 23 C -0.048 4.048 24 N -0.106 5.106 25 C 0.049 3.951 26 N -0.260 5.260 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.249 0.751 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.421 -14.519 19.168 24.650 hybrid contribution 1.213 0.910 0.868 1.748 sum -4.208 -13.608 20.036 24.583 Atomic orbital electron populations 1.21434 0.79681 1.04180 1.00176 1.57370 1.14503 1.22529 1.88708 1.19442 0.90896 0.80511 0.98675 1.21367 1.32647 1.11261 0.92304 0.90380 1.24886 0.95623 0.96905 0.95519 1.69894 1.40433 1.23954 1.18795 0.86904 0.80857 0.79397 0.82825 1.19724 1.20944 1.19029 1.01987 0.73462 0.72920 0.72548 1.93663 1.38657 1.84494 1.77316 1.93548 1.68877 1.60843 1.73988 1.56258 1.13492 1.86025 1.33447 1.21245 0.88406 1.00133 0.92019 1.21696 0.87547 1.00622 0.91235 1.44418 1.10942 1.58996 1.19506 1.18531 0.89381 0.86783 0.85836 1.21137 0.97451 1.07741 1.00095 1.21073 0.97710 0.90759 0.91481 1.16700 0.96273 1.10331 0.93311 1.25387 0.93990 0.92942 0.92480 1.81286 1.07083 1.10642 1.11602 1.22590 0.95799 0.87391 0.89309 1.67333 1.30560 1.19981 1.08097 0.94212 0.89986 0.91212 0.94950 0.95081 0.92442 0.75269 0.89594 0.90832 0.90361 0.90272 0.75101 0.83910 0.84013 0.81658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.69 59.85 0.64 1.98 16 2 N -0.99 -17.86 3.23 -123.05 -0.40 -18.26 16 3 C 0.23 4.99 4.16 -5.19 -0.02 4.97 16 4 C -0.54 -14.69 9.93 -34.44 -0.34 -15.03 16 5 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 8 Si 0.87 20.38 27.37 -169.99 -4.65 15.72 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -5.69 6.69 56.52 0.38 -5.31 16 12 S 2.78 47.25 6.08 -107.50 -0.65 46.60 16 13 O -0.96 -20.53 16.99 -57.17 -0.97 -21.50 16 14 O -0.99 -18.27 16.34 -57.17 -0.93 -19.21 16 15 N -1.13 -11.99 6.05 -10.61 -0.06 -12.06 16 16 C 0.11 0.84 6.37 -4.04 -0.03 0.81 16 17 C 0.11 0.61 5.02 -4.04 -0.02 0.59 16 18 N -0.71 -4.11 5.71 -60.44 -0.35 -4.46 16 19 C 0.43 2.94 7.64 -155.20 -1.19 1.75 16 20 C -0.24 -1.28 9.25 -39.66 -0.37 -1.65 16 21 C 0.02 0.09 9.85 -39.27 -0.39 -0.30 16 22 C -0.16 -0.96 5.75 -106.68 -0.61 -1.57 16 23 C 0.27 2.12 15.37 -22.47 -0.35 1.78 16 24 N -0.43 -4.54 18.54 41.84 0.78 -3.76 16 25 C 0.21 1.28 10.92 -17.10 -0.19 1.09 16 26 N -0.54 -4.07 10.38 -12.12 -0.13 -4.20 16 27 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 28 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 29 H 0.07 0.97 7.05 -51.93 -0.37 0.61 16 30 H 0.03 0.67 7.51 -51.93 -0.39 0.28 16 31 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.41 3.47 8.66 -34.47 -0.30 3.17 16 34 H 0.09 0.68 7.79 -51.93 -0.40 0.27 16 35 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.08 0.34 7.91 -51.93 -0.41 -0.07 16 37 H 0.08 0.37 7.91 -51.93 -0.41 -0.04 16 38 H 0.41 2.18 8.59 -40.82 -0.35 1.82 16 39 H 0.14 0.52 6.66 -52.49 -0.35 0.17 16 40 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -36.84 371.40 -8.96 -45.80 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.01 Total: -0.66 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.95 Total: -3.60 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: 0.62 Total: -68.75 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.91 Total: -40.71 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.65 Total: 15.72 kcal Atomic # 16 Polarization: 47.25 SS G_CDS: -0.65 Total: 46.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.84 -8.96 -45.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917879993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.331 kcal (2) G-P(sol) polarization free energy of solvation -36.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds