Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99771 * 2 1 4 4 C 1.50695 * 109.46816 * 275.55545 * 3 2 1 5 5 H 1.07996 * 120.00397 * 4.95852 * 4 3 2 6 6 C 1.37887 * 119.99892 * 184.95962 * 4 3 2 7 7 N 1.31510 * 120.00018 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99597 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46727 * 90.00728 * 8 6 4 10 10 H 1.48497 * 109.46896 * 209.99763 * 8 6 4 11 11 H 1.48498 * 109.47283 * 330.00547 * 8 6 4 12 12 S 1.65595 * 120.00194 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.40286 * 159.52034 * 12 2 1 14 14 O 1.42102 * 106.39991 * 26.60390 * 12 2 1 15 15 N 1.65590 * 107.22196 * 273.06116 * 12 2 1 16 16 C 1.46499 * 119.99916 * 62.73317 * 15 12 2 17 17 C 1.53008 * 109.47459 * 164.42388 * 16 15 12 18 18 N 1.46498 * 109.47422 * 180.02562 * 17 16 15 19 19 C 1.38584 * 120.00015 * 180.02562 * 18 17 16 20 20 C 1.39356 * 119.53173 * 359.97438 * 19 18 17 21 21 C 1.36886 * 119.38720 * 179.97438 * 20 19 18 22 22 C 1.40360 * 118.48496 * 359.97438 * 21 20 19 23 23 C 1.43199 * 120.47974 * 180.02562 * 22 21 20 24 24 N 9.93284 * 123.19054 * 153.78627 * 15 1 2 25 25 C 1.39575 * 119.03915 * 359.97438 * 22 21 20 26 26 N 1.31713 * 120.51106 * 0.02562 * 25 22 21 27 27 H 1.09001 * 109.46871 * 269.99738 * 1 2 3 28 28 H 1.08998 * 109.47281 * 29.99647 * 1 2 3 29 29 H 1.08997 * 109.46839 * 150.00455 * 1 2 3 30 30 H 1.09002 * 109.47016 * 35.55663 * 3 2 1 31 31 H 1.08999 * 109.46842 * 155.55322 * 3 2 1 32 32 H 0.97008 * 119.99614 * 180.02562 * 7 6 4 33 33 H 0.96999 * 120.00548 * 242.73827 * 15 12 2 34 34 H 1.09004 * 109.47386 * 44.42487 * 16 15 12 35 35 H 1.08998 * 109.47497 * 284.42043 * 16 15 12 36 36 H 1.08996 * 109.46824 * 59.99395 * 17 16 15 37 37 H 1.08998 * 109.46484 * 300.00275 * 17 16 15 38 38 H 0.97002 * 120.00078 * 359.97438 * 18 17 16 39 39 H 1.07996 * 120.30844 * 0.02562 * 20 19 18 40 40 H 1.07999 * 120.76290 * 179.72711 * 21 20 19 41 41 H 1.07997 * 119.74744 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3295 1.7725 -1.4141 5 1 1.8419 1.2475 -2.2221 6 6 3.0729 2.9038 -1.6764 7 7 3.1877 3.3437 -2.9104 8 14 3.9158 3.8123 -0.2786 9 1 5.2812 3.2622 -0.0830 10 1 4.0071 5.2567 -0.6111 11 1 3.1292 3.6402 0.9691 12 16 2.2931 -1.4341 0.0006 13 8 3.5996 -1.1432 -0.4764 14 8 1.4381 -2.3913 -0.6094 15 7 2.4651 -1.9002 1.5803 16 6 1.2803 -2.1932 2.3906 17 6 1.6989 -2.9572 3.6485 18 7 0.5141 -3.2507 4.4586 19 6 0.6453 -3.9397 5.6539 20 6 1.9088 -4.3490 6.0757 21 6 2.0350 -5.0289 7.2571 22 6 0.8771 -5.2900 8.0062 23 6 0.9599 -5.9974 9.2485 24 7 1.0250 -6.5616 10.2324 25 6 -0.3560 -4.8492 7.5232 26 7 -0.4327 -4.1980 6.3809 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6551 2.0014 0.5976 31 1 3.1894 1.1157 0.4253 32 1 3.7110 4.1394 -3.0949 33 1 3.3502 -1.9791 1.9691 34 1 0.5849 -2.8006 1.8113 35 1 0.7959 -1.2597 2.6770 36 1 2.3943 -2.3498 4.2278 37 1 2.1833 -3.8907 3.3622 38 1 -0.3621 -2.9622 4.1587 39 1 2.7805 -4.1313 5.4765 40 1 3.0029 -5.3604 7.6030 41 1 -1.2543 -5.0442 8.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917879993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = -25.618009 kcal Electronic energy + Delta-G solvation = -25874.604970 eV Core-core repulsion = 21915.796832 eV Total energy + Delta-G solvation = -3958.808138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33647 -38.41778 -38.14419 -37.39114 -37.23424 -36.84141 -35.50983 -34.48041 -33.59917 -31.47024 -30.24261 -28.77791 -26.75953 -25.17608 -24.32004 -23.81711 -23.19862 -20.46699 -19.89756 -19.14972 -18.85942 -18.71152 -18.21194 -17.66757 -17.30719 -16.51618 -16.39658 -15.96363 -15.57732 -15.46816 -15.30381 -15.17663 -14.73508 -14.60665 -14.46778 -14.37386 -14.05281 -14.02264 -13.90687 -13.44397 -13.36320 -13.27807 -13.11202 -13.07102 -12.98714 -12.94928 -12.52442 -12.31776 -12.20960 -11.99080 -11.68434 -11.20546 -10.83295 -10.75893 -10.52856 -10.49694 -9.74813 -8.75701 -8.27121 -6.33098 -0.36316 -0.11920 0.39813 1.39365 1.43651 1.51705 1.70022 1.83711 2.06491 2.25020 2.37917 2.71044 3.01967 3.02491 3.07820 3.44846 3.62855 3.73903 3.92499 3.98248 4.04535 4.13162 4.33233 4.43918 4.51273 4.71153 4.76773 4.80535 4.90490 4.91600 4.94462 5.00402 5.11519 5.15136 5.37531 5.43843 5.51097 5.75000 5.91462 6.15068 6.33037 6.46270 6.57887 6.70947 7.09926 7.30509 8.90309 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002084 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.289257 B =13429.708496 C =13872.115563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.999 5.999 3 C 0.235 3.765 4 C -0.546 4.546 5 H 0.028 0.972 6 C 0.004 3.996 7 N -0.950 5.950 8 Si 0.945 3.055 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.225 1.225 12 S 2.801 3.199 13 O -1.009 7.009 14 O -1.010 7.010 15 N -1.111 6.111 16 C 0.101 3.899 17 C 0.120 3.880 18 N -0.707 5.707 19 C 0.422 3.578 20 C -0.240 4.240 21 C 0.021 3.979 22 C -0.165 4.165 23 C 0.294 3.706 24 N -0.481 5.481 25 C 0.212 3.788 26 N -0.565 5.565 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.428 0.572 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 -13.715 22.082 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.840 5.840 3 C 0.110 3.890 4 C -0.586 4.586 5 H 0.046 0.954 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.766 3.234 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.147 1.147 12 S 2.809 3.191 13 O -0.993 6.993 14 O -0.993 6.993 15 N -0.876 5.876 16 C -0.026 4.026 17 C -0.005 4.005 18 N -0.337 5.337 19 C 0.184 3.816 20 C -0.265 4.265 21 C -0.006 4.006 22 C -0.174 4.174 23 C -0.020 4.020 24 N -0.159 5.159 25 C 0.049 3.951 26 N -0.282 5.282 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.265 0.735 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.251 0.749 39 H 0.181 0.819 40 H 0.180 0.820 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.262 -14.558 22.162 27.033 hybrid contribution 1.051 0.818 -0.156 1.341 sum -4.211 -13.740 22.006 26.283 Atomic orbital electron populations 1.21668 0.77835 1.03509 1.03098 1.57290 1.15830 1.21424 1.89430 1.19206 0.92186 0.82438 0.95162 1.21769 1.31677 1.10932 0.94188 0.95394 1.25986 0.96597 0.98147 0.98610 1.70081 1.42153 1.24960 1.21788 0.85774 0.79792 0.77420 0.80386 1.19470 1.20852 1.14719 1.01135 0.71943 0.72459 0.73594 1.93590 1.41135 1.85138 1.79419 1.93520 1.69137 1.61155 1.75476 1.55557 1.15434 1.85062 1.31591 1.21505 0.87091 1.01433 0.92533 1.21660 0.87551 1.01079 0.90258 1.44405 1.11200 1.58786 1.19267 1.18773 0.89860 0.86950 0.86020 1.21351 0.97566 1.07311 1.00227 1.21326 0.98169 0.89965 0.91106 1.16737 0.97003 1.10898 0.92811 1.25577 0.92462 0.91823 0.92182 1.81311 1.08769 1.12569 1.13210 1.22845 0.96435 0.86761 0.89054 1.67346 1.31284 1.20875 1.08723 0.89356 0.91652 0.91042 0.92529 0.94315 0.92443 0.73519 0.89759 0.89263 0.88606 0.89353 0.74923 0.81894 0.82020 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.69 127.77 1.37 3.66 16 2 N -1.00 -34.63 3.23 -543.22 -1.75 -36.38 16 3 C 0.23 9.89 4.16 85.63 0.36 10.25 16 4 C -0.55 -30.52 9.93 25.60 0.25 -30.27 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 6 C 0.00 0.24 5.47 84.66 0.46 0.71 16 7 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 8 Si 0.94 41.12 27.37 68.60 1.88 43.00 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.22 -8.25 6.69 99.48 0.67 -7.59 16 12 S 2.80 91.91 6.08 -56.49 -0.34 91.57 16 13 O -1.01 -43.22 16.99 -128.00 -2.18 -45.39 16 14 O -1.01 -36.58 16.34 -128.00 -2.09 -38.67 16 15 N -1.11 -20.15 6.05 -187.48 -1.13 -21.28 16 16 C 0.10 1.16 6.37 86.38 0.55 1.71 16 17 C 0.12 0.79 5.02 86.38 0.43 1.22 16 18 N -0.71 -5.86 5.71 -345.12 -1.97 -7.83 16 19 C 0.42 4.51 7.64 133.21 1.02 5.53 16 20 C -0.24 -1.76 9.25 22.22 0.21 -1.55 16 21 C 0.02 0.16 9.85 22.47 0.22 0.38 16 22 C -0.16 -1.70 5.75 -21.19 -0.12 -1.82 16 23 C 0.29 4.35 15.37 88.33 1.36 5.70 16 24 N -0.48 -9.97 18.54 19.00 0.35 -9.62 16 25 C 0.21 2.17 10.92 85.03 0.93 3.10 16 26 N -0.56 -7.27 10.38 -192.25 -2.00 -9.27 16 27 H 0.09 1.55 8.06 -2.39 -0.02 1.54 16 28 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 29 H 0.07 1.91 7.05 -2.39 -0.02 1.90 16 30 H 0.06 2.13 7.51 -2.39 -0.02 2.12 16 31 H 0.04 1.59 6.66 -2.39 -0.02 1.58 16 32 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 33 H 0.43 5.71 8.66 -96.75 -0.84 4.87 16 34 H 0.08 1.06 7.79 -2.39 -0.02 1.04 16 35 H 0.09 0.81 8.06 -2.39 -0.02 0.79 16 36 H 0.10 0.36 7.91 -2.39 -0.02 0.34 16 37 H 0.09 0.46 7.91 -2.39 -0.02 0.45 16 38 H 0.41 3.14 8.59 -92.71 -0.80 2.34 16 39 H 0.16 0.48 6.66 -2.91 -0.02 0.46 16 40 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 41 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -84.16 371.40 -2.48 -86.64 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.58 Total: 7.37 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 7.03 Total: -1.37 kcal Atomic # 7 Polarization: -136.94 SS G_CDS: -6.20 Total: -143.15 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -4.27 Total: -84.06 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.88 Total: 43.00 kcal Atomic # 16 Polarization: 91.91 SS G_CDS: -0.34 Total: 91.57 kcal Total: -84.16 -2.48 -86.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917879993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.021 kcal (2) G-P(sol) polarization free energy of solvation -84.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds