Wall clock time and date at job start Sat Apr 11 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47029 * 2 1 4 4 C 1.46507 * 119.99849 * 269.99789 * 3 2 1 5 5 C 1.50701 * 109.47142 * 269.99984 * 4 3 2 6 6 H 1.07999 * 119.99958 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99911 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99695 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00134 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47138 * 89.99632 * 9 7 5 11 11 H 1.48499 * 109.47035 * 209.99618 * 9 7 5 12 12 H 1.48504 * 109.47220 * 329.99700 * 9 7 5 13 13 C 1.34774 * 120.00408 * 89.99845 * 3 2 1 14 14 O 1.21289 * 120.00090 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00101 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47393 * 179.97438 * 15 13 3 17 17 C 1.34887 * 117.00403 * 179.97438 * 16 15 13 18 18 O 1.21624 * 119.99726 * 0.02562 * 17 16 15 19 19 C 1.46491 * 120.00543 * 180.02562 * 17 16 15 20 20 C 1.37991 * 126.26611 * 180.18847 * 19 17 16 21 21 C 1.39794 * 106.96807 * 180.25494 * 20 19 17 22 22 N 1.48020 * 126.08027 * 179.72068 * 21 20 19 23 23 O 1.21793 * 120.00089 * 180.02562 * 22 21 20 24 24 O 1.21798 * 119.99748 * 0.02562 * 22 21 20 25 25 C 1.35485 * 107.84326 * 359.74279 * 21 20 19 26 26 N 1.34957 * 108.98658 * 359.97438 * 25 21 20 27 27 C 1.46499 * 125.63725 * 180.02562 * 26 25 21 28 28 H 1.08998 * 109.47332 * 300.00078 * 1 2 3 29 29 H 1.08995 * 109.47041 * 60.00452 * 1 2 3 30 30 H 1.09000 * 109.46770 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47395 * 239.99141 * 2 1 3 32 32 H 1.09004 * 109.47005 * 119.99352 * 2 1 3 33 33 H 1.09001 * 109.47026 * 29.99723 * 4 3 2 34 34 H 1.08997 * 109.47302 * 149.99874 * 4 3 2 35 35 H 0.97002 * 120.00027 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47119 * 59.99990 * 15 13 3 37 37 H 1.08997 * 109.46925 * 300.00121 * 15 13 3 38 38 H 1.08002 * 126.51818 * 359.96572 * 20 19 17 39 39 H 1.08004 * 125.50845 * 179.97438 * 25 21 20 40 40 H 1.09002 * 109.47391 * 90.02143 * 27 26 25 41 41 H 1.09001 * 109.46813 * 330.02199 * 27 26 25 42 42 H 1.09004 * 109.47041 * 210.02326 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3895 -2.8780 8 7 5.3914 2.1833 -3.2573 9 14 3.0128 3.4350 -3.9293 10 1 3.1162 4.8553 -3.5083 11 1 3.4058 3.3118 -5.3561 12 1 1.6131 2.9690 -3.7594 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1600 1.1671 15 6 1.9912 1.3065 2.4723 16 8 2.3064 2.1959 3.5759 17 6 2.1337 1.7103 4.8224 18 8 1.7309 0.5738 4.9818 19 6 2.4312 2.5516 5.9841 20 6 2.3054 2.1876 7.3092 21 6 2.6888 3.2932 8.0741 22 7 2.7083 3.3659 9.5524 23 8 3.0636 4.3903 10.1071 24 8 2.3689 2.4013 10.2140 25 6 3.0389 4.2864 7.2217 26 7 2.8914 3.8491 5.9536 27 6 3.1688 4.6281 4.7443 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5817 1.6876 -2.0285 34 1 2.0955 3.1410 -1.1386 35 1 5.7175 2.5737 -4.0833 36 1 2.6211 0.4188 2.5303 37 1 0.9431 1.0127 2.5298 38 1 1.9697 1.2321 7.6841 39 1 3.3808 5.2694 7.5105 40 1 4.2076 4.4820 4.4482 41 1 2.9934 5.6850 4.9449 42 1 2.5117 4.2969 3.9401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919027841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:54 Heat of formation + Delta-G solvation = -61.617198 kcal Electronic energy + Delta-G solvation = -29010.152279 eV Core-core repulsion = 24574.737477 eV Total energy + Delta-G solvation = -4435.414802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.83456 -41.75294 -40.52457 -39.20798 -36.80614 -36.64981 -35.62200 -33.94553 -32.89830 -31.08711 -30.58625 -29.48924 -28.26348 -27.24971 -25.76412 -24.03145 -23.20650 -22.35611 -21.62628 -20.70299 -19.55251 -18.90195 -18.61163 -17.74402 -17.47711 -17.23174 -16.97368 -16.94688 -16.59992 -16.03573 -15.95237 -15.40827 -14.81994 -14.44141 -14.16957 -13.83512 -13.71177 -13.57241 -13.27041 -13.09690 -12.91553 -12.61732 -12.51648 -12.38699 -12.00214 -11.75067 -11.62081 -11.47443 -11.29244 -11.23079 -11.20124 -11.09933 -10.82568 -10.65110 -10.30481 -9.98628 -9.70265 -9.42474 -9.35176 -8.72428 -8.01164 -6.21906 -4.22182 0.04024 0.47163 1.04789 1.79386 1.81087 2.18045 2.42982 2.92910 3.18106 3.24000 3.25790 3.49708 3.83957 4.09128 4.12212 4.26699 4.40268 4.53781 4.73795 4.83165 4.85136 4.92172 4.93921 5.10908 5.13464 5.33125 5.34615 5.38860 5.51235 5.75004 5.79661 5.86068 5.97203 6.01938 6.21737 6.23247 6.49772 6.73370 7.04737 7.22611 7.44368 7.51524 7.91093 8.29629 8.58977 8.80559 9.37018 10.91184 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019870 B = 0.002351 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.853834 B =11907.349339 C =12823.128637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 N -0.584 5.584 4 C 0.218 3.782 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.522 6.522 15 C 0.051 3.949 16 O -0.330 6.330 17 C 0.540 3.460 18 O -0.486 6.486 19 C -0.022 4.022 20 C -0.041 4.041 21 C -0.139 4.139 22 N 0.065 4.935 23 O -0.173 6.173 24 O -0.162 6.162 25 C 0.124 3.876 26 N -0.389 5.389 27 C 0.053 3.947 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.179 0.821 39 H 0.203 0.797 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 1.166 16.418 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.317 5.317 4 C 0.099 3.901 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.026 4.026 16 O -0.246 6.246 17 C 0.383 3.617 18 O -0.373 6.373 19 C -0.131 4.131 20 C -0.065 4.065 21 C -0.231 4.231 22 N 0.583 4.417 23 O -0.385 6.385 24 O -0.377 6.377 25 C -0.022 4.022 26 N -0.061 5.061 27 C -0.086 4.086 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.197 0.803 39 H 0.220 0.780 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.346 1.582 15.146 17.366 hybrid contribution -0.394 0.333 -0.363 0.631 sum -8.740 1.915 14.784 17.281 Atomic orbital electron populations 1.22244 0.96323 1.02066 1.02330 1.21581 0.93760 0.83403 1.03680 1.47881 1.63770 1.13612 1.06442 1.19726 0.97646 0.93378 0.79393 1.21279 0.95186 1.33352 1.07370 0.90702 1.24854 0.95014 0.95751 0.97298 1.69889 1.15091 1.44682 1.23559 0.86854 0.81379 0.81536 0.79923 1.19877 1.20949 1.19057 1.19629 0.79462 0.87081 0.84225 1.90692 1.44761 1.17615 1.86791 1.23060 1.03275 0.92656 0.83627 1.86599 1.79012 1.44913 1.14038 1.19412 0.75179 0.84912 0.82170 1.90956 1.42203 1.17806 1.86314 1.19368 1.15189 0.85959 0.92623 1.21098 0.97947 0.98977 0.88493 1.20061 1.22896 0.99384 0.80747 1.42523 0.97309 1.00019 1.01828 1.94541 1.50476 1.20495 1.72979 1.94565 1.50749 1.28464 1.63911 1.21734 0.98644 0.99945 0.81870 1.44324 1.43776 1.10797 1.07194 1.22819 1.05877 0.96054 0.83822 0.93055 0.91906 0.91523 0.89000 0.91299 0.94791 0.94396 0.92411 0.87942 0.88158 0.80316 0.78016 0.88277 0.88176 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.24 37.16 0.38 -1.49 16 2 C 0.10 1.35 5.93 -4.04 -0.02 1.33 16 3 N -0.58 -10.66 2.46 -175.06 -0.43 -11.09 16 4 C 0.22 4.88 4.23 -5.19 -0.02 4.86 16 5 C -0.53 -14.35 9.94 -34.44 -0.34 -14.69 16 6 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 9 Si 0.88 20.36 27.47 -169.99 -4.67 15.69 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 13 C 0.51 9.17 7.75 -10.99 -0.09 9.08 16 14 O -0.52 -11.28 16.08 -14.11 -0.23 -11.51 16 15 C 0.05 0.68 4.51 36.00 0.16 0.84 16 16 O -0.33 -4.35 7.18 -47.69 -0.34 -4.69 16 17 C 0.54 6.61 7.92 34.06 0.27 6.88 16 18 O -0.49 -6.69 16.68 -19.36 -0.32 -7.01 16 19 C -0.02 -0.23 6.88 -82.00 -0.56 -0.79 16 20 C -0.04 -0.41 10.39 -39.09 -0.41 -0.82 16 21 C -0.14 -1.39 7.11 -80.35 -0.57 -1.96 16 22 N 0.07 0.78 4.45 33.77 0.15 0.93 16 23 O -0.17 -2.10 19.03 -29.46 -0.56 -2.66 16 24 O -0.16 -2.12 19.05 -29.46 -0.56 -2.68 16 25 C 0.12 0.92 11.03 -17.16 -0.19 0.73 16 26 N -0.39 -3.24 3.15 -120.40 -0.38 -3.62 16 27 C 0.05 0.38 10.57 59.85 0.63 1.01 16 28 H 0.05 0.53 7.22 -51.93 -0.37 0.15 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 34 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.10 1.25 7.40 -51.93 -0.38 0.87 16 37 H 0.10 1.12 7.18 -51.93 -0.37 0.74 16 38 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.20 0.81 8.06 -52.48 -0.42 0.38 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 1.15 6.13 -51.93 -0.32 0.83 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -34.40 373.68 -6.85 -41.24 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.06 Total: -1.52 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.86 Total: 6.91 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.12 Total: -39.41 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -2.01 Total: -28.55 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.40 -6.85 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919027841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.372 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds