Wall clock time and date at job start Sat Apr 11 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47029 * 2 1 4 4 C 1.46507 * 119.99849 * 269.99789 * 3 2 1 5 5 C 1.50701 * 109.47142 * 269.99984 * 4 3 2 6 6 H 1.07999 * 119.99958 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99911 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99695 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00134 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47138 * 89.99632 * 9 7 5 11 11 H 1.48499 * 109.47035 * 209.99618 * 9 7 5 12 12 H 1.48504 * 109.47220 * 329.99700 * 9 7 5 13 13 C 1.34774 * 120.00408 * 89.99845 * 3 2 1 14 14 O 1.21289 * 120.00090 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00101 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47393 * 179.97438 * 15 13 3 17 17 C 1.34887 * 117.00403 * 179.97438 * 16 15 13 18 18 O 1.21624 * 119.99726 * 0.02562 * 17 16 15 19 19 C 1.46491 * 120.00543 * 180.02562 * 17 16 15 20 20 C 1.37991 * 126.26611 * 180.18847 * 19 17 16 21 21 C 1.39794 * 106.96807 * 180.25494 * 20 19 17 22 22 N 1.48020 * 126.08027 * 179.72068 * 21 20 19 23 23 O 1.21793 * 120.00089 * 180.02562 * 22 21 20 24 24 O 1.21798 * 119.99748 * 0.02562 * 22 21 20 25 25 C 1.35485 * 107.84326 * 359.74279 * 21 20 19 26 26 N 1.34957 * 108.98658 * 359.97438 * 25 21 20 27 27 C 1.46499 * 125.63725 * 180.02562 * 26 25 21 28 28 H 1.08998 * 109.47332 * 300.00078 * 1 2 3 29 29 H 1.08995 * 109.47041 * 60.00452 * 1 2 3 30 30 H 1.09000 * 109.46770 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47395 * 239.99141 * 2 1 3 32 32 H 1.09004 * 109.47005 * 119.99352 * 2 1 3 33 33 H 1.09001 * 109.47026 * 29.99723 * 4 3 2 34 34 H 1.08997 * 109.47302 * 149.99874 * 4 3 2 35 35 H 0.97002 * 120.00027 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47119 * 59.99990 * 15 13 3 37 37 H 1.08997 * 109.46925 * 300.00121 * 15 13 3 38 38 H 1.08002 * 126.51818 * 359.96572 * 20 19 17 39 39 H 1.08004 * 125.50845 * 179.97438 * 25 21 20 40 40 H 1.09002 * 109.47391 * 90.02143 * 27 26 25 41 41 H 1.09001 * 109.46813 * 330.02199 * 27 26 25 42 42 H 1.09004 * 109.47041 * 210.02326 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3895 -2.8780 8 7 5.3914 2.1833 -3.2573 9 14 3.0128 3.4350 -3.9293 10 1 3.1162 4.8553 -3.5083 11 1 3.4058 3.3118 -5.3561 12 1 1.6131 2.9690 -3.7594 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1600 1.1671 15 6 1.9912 1.3065 2.4723 16 8 2.3064 2.1959 3.5759 17 6 2.1337 1.7103 4.8224 18 8 1.7309 0.5738 4.9818 19 6 2.4312 2.5516 5.9841 20 6 2.3054 2.1876 7.3092 21 6 2.6888 3.2932 8.0741 22 7 2.7083 3.3659 9.5524 23 8 3.0636 4.3903 10.1071 24 8 2.3689 2.4013 10.2140 25 6 3.0389 4.2864 7.2217 26 7 2.8914 3.8491 5.9536 27 6 3.1688 4.6281 4.7443 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5817 1.6876 -2.0285 34 1 2.0955 3.1410 -1.1386 35 1 5.7175 2.5737 -4.0833 36 1 2.6211 0.4188 2.5303 37 1 0.9431 1.0127 2.5298 38 1 1.9697 1.2321 7.6841 39 1 3.3808 5.2694 7.5105 40 1 4.2076 4.4820 4.4482 41 1 2.9934 5.6850 4.9449 42 1 2.5117 4.2969 3.9401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919027841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:54 Heat of formation + Delta-G solvation = -81.911501 kcal Electronic energy + Delta-G solvation = -29011.032307 eV Core-core repulsion = 24574.737477 eV Total energy + Delta-G solvation = -4436.294829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.61956 -42.61440 -41.57283 -40.53889 -37.85322 -37.56448 -37.04115 -34.89755 -34.64387 -32.18324 -31.77427 -30.68703 -29.12257 -28.65783 -26.60228 -25.04276 -24.44004 -23.87887 -22.41887 -21.56901 -20.42206 -20.23294 -19.52563 -19.14023 -18.61093 -18.48129 -18.13925 -17.98932 -17.46958 -17.27451 -16.78437 -16.63169 -16.24267 -15.75025 -15.23036 -14.93596 -14.79530 -14.56548 -14.32791 -14.21955 -14.12006 -13.79143 -13.60528 -13.41309 -13.30631 -13.15127 -12.68914 -12.58641 -12.44509 -12.40048 -12.24355 -12.23168 -12.19226 -12.03928 -11.86329 -11.75447 -10.84791 -10.82026 -10.70849 -10.17692 -9.54695 -8.34740 -6.40463 -0.83763 -0.32868 0.24891 0.87030 1.02305 1.33831 1.36714 1.39438 1.45399 1.52036 1.57045 2.24096 2.30238 2.99653 3.10654 3.25778 3.34096 3.53777 3.67083 3.86693 3.91039 4.11896 4.14907 4.20764 4.28351 4.34777 4.57022 4.60975 4.70612 4.76968 4.84043 4.91136 4.95818 4.98359 5.05863 5.27085 5.35018 5.43488 5.45402 5.53389 6.18678 6.26176 6.51980 6.57248 6.61671 7.12206 7.26755 8.81921 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019870 B = 0.002351 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.853834 B =11907.349339 C =12823.128637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.227 3.773 5 C -0.536 4.536 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.236 1.236 13 C 0.505 3.495 14 O -0.568 6.568 15 C 0.060 3.940 16 O -0.337 6.337 17 C 0.545 3.455 18 O -0.505 6.505 19 C -0.041 4.041 20 C -0.037 4.037 21 C -0.159 4.159 22 N 0.069 4.931 23 O -0.165 6.165 24 O -0.203 6.203 25 C 0.158 3.842 26 N -0.385 5.385 27 C 0.053 3.947 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.268 0.732 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.180 0.820 39 H 0.244 0.756 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.475 2.048 16.790 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.575 4.575 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.159 1.159 13 C 0.292 3.708 14 O -0.447 6.447 15 C -0.016 4.016 16 O -0.253 6.253 17 C 0.390 3.610 18 O -0.393 6.393 19 C -0.150 4.150 20 C -0.062 4.062 21 C -0.251 4.251 22 N 0.582 4.418 23 O -0.382 6.382 24 O -0.409 6.409 25 C 0.011 3.989 26 N -0.056 5.056 27 C -0.085 4.085 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.198 0.802 39 H 0.260 0.740 40 H 0.117 0.883 41 H 0.156 0.844 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.255 2.345 15.558 18.781 hybrid contribution 0.288 0.080 -0.434 0.527 sum -9.967 2.426 15.125 18.275 Atomic orbital electron populations 1.22181 0.93703 1.03898 1.02326 1.21894 0.95851 0.80852 1.04443 1.47947 1.63775 1.15270 1.05364 1.19375 0.94956 0.93282 0.81855 1.21529 0.97007 1.32184 1.06764 0.95185 1.25836 0.96645 0.97214 0.98952 1.70049 1.17454 1.46500 1.24475 0.85739 0.80525 0.79126 0.77715 1.19967 1.20436 1.15937 1.20360 0.78200 0.86729 0.85549 1.90660 1.46691 1.19724 1.87637 1.22942 1.05249 0.91956 0.81474 1.86617 1.79253 1.45030 1.14370 1.19573 0.74559 0.84867 0.82019 1.90941 1.43315 1.18615 1.86429 1.19159 1.16910 0.87033 0.91858 1.21197 0.97175 0.99288 0.88529 1.20117 1.24862 1.00435 0.79678 1.42706 0.96836 0.99687 1.02570 1.94512 1.49757 1.20314 1.73581 1.94572 1.52716 1.28915 1.64709 1.22347 0.95406 1.00510 0.80651 1.44447 1.43175 1.10078 1.07943 1.22919 1.05160 0.97775 0.82685 0.92076 0.92896 0.88734 0.90153 0.88765 0.92888 0.95707 0.92286 0.86580 0.85283 0.80226 0.73989 0.88322 0.84439 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 71.98 0.74 -2.34 16 2 C 0.09 2.33 5.93 86.38 0.51 2.84 16 3 N -0.59 -21.24 2.46 -826.15 -2.03 -23.26 16 4 C 0.23 10.08 4.23 85.63 0.36 10.44 16 5 C -0.54 -29.63 9.94 25.60 0.25 -29.37 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.66 5.47 84.65 0.46 1.12 16 8 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 9 Si 0.95 41.86 27.47 68.60 1.88 43.75 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 13 C 0.50 17.91 7.75 87.66 0.68 18.59 16 14 O -0.57 -24.88 16.08 15.74 0.25 -24.63 16 15 C 0.06 1.52 4.51 71.24 0.32 1.84 16 16 O -0.34 -8.59 7.18 -51.61 -0.37 -8.96 16 17 C 0.54 12.80 7.92 69.97 0.55 13.35 16 18 O -0.50 -13.34 16.68 19.43 0.32 -13.02 16 19 C -0.04 -0.80 6.88 40.31 0.28 -0.52 16 20 C -0.04 -0.72 10.39 22.59 0.23 -0.48 16 21 C -0.16 -2.90 7.11 36.11 0.26 -2.65 16 22 N 0.07 1.57 4.45 -47.08 -0.21 1.36 16 23 O -0.17 -3.73 19.03 18.90 0.36 -3.37 16 24 O -0.20 -5.36 19.05 18.89 0.36 -5.00 16 25 C 0.16 1.86 11.03 83.58 0.92 2.78 16 26 N -0.38 -5.53 3.15 -534.85 -1.68 -7.22 16 27 C 0.05 0.64 10.57 127.77 1.35 1.99 16 28 H 0.06 1.05 7.22 -2.39 -0.02 1.03 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 32 H 0.09 1.90 6.44 -2.38 -0.02 1.89 16 33 H 0.05 2.16 7.13 -2.39 -0.02 2.14 16 34 H 0.02 1.17 6.85 -2.39 -0.02 1.16 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.12 2.64 7.40 -2.39 -0.02 2.62 16 37 H 0.13 2.52 7.18 -2.39 -0.02 2.51 16 38 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.24 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.10 1.76 6.13 -2.38 -0.01 1.75 16 Total: -1.00 -78.68 373.68 7.12 -71.56 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.01 Total: 8.42 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.92 Total: 17.60 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.62 Total: -86.35 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: 0.93 Total: -54.97 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.88 Total: 43.75 kcal Total: -78.68 7.12 -71.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919027841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.352 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds