Wall clock time and date at job start Sat Apr 11 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99914 * 2 1 4 4 H 1.48500 * 109.46975 * 269.99848 * 3 2 1 5 5 H 1.48498 * 109.47463 * 30.00026 * 3 2 1 6 6 H 1.48504 * 109.46734 * 150.00351 * 3 2 1 7 7 C 1.39945 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99750 * 189.56943 * 7 2 1 9 9 C 1.41390 * 120.00111 * 9.56755 * 7 2 1 10 10 C 1.40717 * 120.24715 * 28.86458 * 9 7 2 11 11 C 1.37611 * 119.74791 * 179.97438 * 10 9 7 12 12 C 1.38639 * 120.24929 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.75104 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.47042 * 89.99891 * 13 12 11 15 15 C 1.46475 * 110.99452 * 49.75628 * 14 13 12 16 16 C 1.53188 * 109.89492 * 196.99654 * 15 14 13 17 17 S 1.81818 * 108.68095 * 297.36521 * 16 15 14 18 18 O 1.42093 * 108.70195 * 298.06362 * 17 16 15 19 19 O 1.42092 * 108.69953 * 166.57385 * 17 16 15 20 20 C 1.81820 * 101.01764 * 52.31802 * 17 16 15 21 21 C 1.46472 * 110.99988 * 175.61189 * 14 13 12 22 22 H 1.09005 * 109.40108 * 283.13156 * 21 14 13 23 23 C 1.52993 * 109.39945 * 42.87075 * 21 14 13 24 24 C 1.53007 * 109.47022 * 184.71713 * 23 21 14 25 25 O 1.42903 * 109.47184 * 183.85580 * 24 23 21 26 26 C 1.38635 * 120.49708 * 359.97438 * 12 11 10 27 27 C 1.37610 * 120.25079 * 359.97438 * 26 12 11 28 28 H 0.97002 * 119.99449 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.12532 * 0.04107 * 10 9 7 30 30 H 1.08005 * 119.87933 * 180.29276 * 11 10 9 31 31 H 1.08999 * 109.47874 * 209.99864 * 13 12 11 32 32 H 1.09003 * 109.47390 * 330.00227 * 13 12 11 33 33 H 1.08994 * 109.40057 * 317.12543 * 15 14 13 34 34 H 1.08996 * 109.39943 * 76.87327 * 15 14 13 35 35 H 1.08998 * 109.59718 * 177.60631 * 16 15 14 36 36 H 1.09002 * 109.60241 * 57.12544 * 16 15 14 37 37 H 1.09001 * 109.60131 * 187.92424 * 20 17 16 38 38 H 1.08999 * 109.73691 * 67.52132 * 20 17 16 39 39 H 1.08994 * 109.47334 * 304.71734 * 23 21 14 40 40 H 1.09000 * 109.47162 * 64.72093 * 23 21 14 41 41 H 1.08998 * 109.47084 * 303.86202 * 24 23 21 42 42 H 1.09005 * 109.46621 * 63.86304 * 24 23 21 43 43 H 0.96691 * 113.99830 * 180.02562 * 25 24 23 44 44 H 1.08008 * 119.87263 * 179.97438 * 26 12 11 45 45 H 1.07998 * 120.12860 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0766 -1.2185 0.1560 9 6 1.3157 -2.4280 -0.2024 10 6 0.1376 -2.4531 -0.9716 11 6 -0.5277 -3.6425 -1.1630 12 6 -0.0416 -4.8129 -0.6009 13 6 -0.7794 -6.1089 -0.8172 14 7 -0.2696 -6.7664 -2.0279 15 6 1.1934 -6.8371 -2.0103 16 6 1.7185 -7.1240 -3.4205 17 16 1.0995 -8.7485 -3.9531 18 8 1.6047 -9.7405 -3.0700 19 8 1.3156 -8.8823 -5.3511 20 6 -0.6837 -8.5558 -3.6545 21 6 -0.8912 -8.0797 -2.2134 22 1 -0.4380 -8.7950 -1.5270 23 6 -2.3898 -7.9782 -1.9225 24 6 -3.0199 -9.3703 -2.0009 25 8 -4.4332 -9.2644 -1.8181 26 6 1.1181 -4.7999 0.1587 27 6 1.8003 -3.6223 0.3623 28 1 -0.4849 0.8401 0.0004 29 1 -0.2425 -1.5426 -1.4109 30 1 -1.4295 -3.6650 -1.7569 31 1 -0.6270 -6.7618 0.0422 32 1 -1.8439 -5.9059 -0.9350 33 1 1.5975 -5.8875 -1.6597 34 1 1.5092 -7.6342 -1.3373 35 1 2.8084 -7.1334 -3.4098 36 1 1.3638 -6.3546 -4.1063 37 1 -1.1841 -9.5133 -3.7989 38 1 -1.0952 -7.8202 -4.3456 39 1 -2.5391 -7.5675 -0.9240 40 1 -2.8593 -7.3250 -2.6581 41 1 -2.8115 -9.8091 -2.9766 42 1 -2.5991 -10.0040 -1.2201 43 1 -4.8991 -10.1109 -1.8553 44 1 1.4875 -5.7176 0.5922 45 1 2.7037 -3.6145 0.9540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932310277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:11 Heat of formation + Delta-G solvation = -91.204705 kcal Electronic energy + Delta-G solvation = -27791.582873 eV Core-core repulsion = 23901.178275 eV Total energy + Delta-G solvation = -3890.404599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.52313 -37.63488 -37.12960 -36.74482 -36.11671 -34.10153 -33.26986 -31.70018 -29.57909 -29.36836 -29.07062 -26.32443 -24.72256 -23.63562 -22.10469 -21.03669 -20.62995 -19.67495 -18.94203 -17.81167 -17.37478 -16.83964 -16.54332 -15.98170 -15.80583 -15.58534 -15.28659 -15.05167 -14.57551 -14.12809 -13.87002 -13.79150 -13.62809 -13.12854 -12.91818 -12.55370 -12.51840 -12.36418 -12.16440 -12.11937 -12.01302 -11.98256 -11.68364 -11.57300 -11.38953 -11.28319 -11.16026 -11.04850 -10.62953 -10.54359 -10.45859 -10.16152 -10.06087 -9.69458 -9.43757 -9.27590 -8.33550 -7.55831 -7.34055 -6.77634 -4.46140 -0.05558 2.54044 2.60912 2.94158 3.03421 3.06052 3.08271 3.51530 3.59922 3.85274 3.88548 4.11151 4.33344 4.53628 4.61825 4.74803 4.76442 4.91433 5.02061 5.05805 5.11029 5.19314 5.38295 5.47051 5.58244 5.64928 5.69459 5.81925 5.90561 6.02063 6.09368 6.14386 6.21716 6.34822 6.86068 6.96157 7.02719 7.08981 7.17802 7.28428 7.34891 7.52004 7.73704 7.97723 8.00612 8.21371 8.56699 8.82043 8.87621 10.15503 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.002966 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.276134 B = 9438.702042 C =10641.174874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.160 4.160 11 C -0.080 4.080 12 C -0.216 4.216 13 C 0.121 3.879 14 N -0.543 5.543 15 C 0.054 3.946 16 C -0.585 4.585 17 S 2.406 3.594 18 O -0.944 6.944 19 O -0.949 6.949 20 C -0.597 4.597 21 C 0.100 3.900 22 H 0.062 0.938 23 C -0.115 4.115 24 C 0.073 3.927 25 O -0.572 6.572 26 C -0.090 4.090 27 C -0.222 4.222 28 H 0.280 0.720 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.050 0.950 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.379 0.621 44 H 0.086 0.914 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 -14.408 -4.816 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.180 4.180 11 C -0.099 4.099 12 C -0.218 4.218 13 C -0.004 4.004 14 N -0.268 5.268 15 C -0.074 4.074 16 C -0.716 4.716 17 S 2.590 3.410 18 O -0.942 6.942 19 O -0.946 6.946 20 C -0.727 4.727 21 C -0.009 4.009 22 H 0.079 0.921 23 C -0.154 4.154 24 C -0.006 4.006 25 O -0.377 6.377 26 C -0.109 4.109 27 C -0.241 4.241 28 H 0.091 0.909 29 H 0.139 0.861 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.226 0.774 44 H 0.104 0.896 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.665 -14.086 -5.493 15.557 hybrid contribution 0.029 0.381 0.830 0.914 sum -3.636 -13.705 -4.663 14.927 Atomic orbital electron populations 1.69784 1.07414 1.29094 1.36229 1.25903 0.94863 1.01274 0.92369 0.86254 0.80325 0.80516 0.79267 1.19325 1.20272 1.18688 1.19621 0.95675 0.90501 1.43365 0.90542 1.17663 0.91513 0.91978 0.87813 1.21415 0.98434 0.96593 1.01528 1.20533 0.98233 0.92617 0.98471 1.18854 1.00040 0.93145 1.09754 1.20844 0.98823 0.92992 0.87756 1.61432 1.05545 1.18082 1.41757 1.21988 0.87734 1.05922 0.91774 1.30146 1.11462 1.21883 1.08135 1.08258 0.78966 0.78462 0.75276 1.93575 1.77633 1.55741 1.67209 1.93580 1.84351 1.86191 1.30455 1.30376 1.25543 1.10725 1.06035 1.21133 0.96406 0.91389 0.92019 0.92058 1.21645 0.92552 0.96679 1.04508 1.22260 0.81230 0.97598 0.99463 1.86491 1.19472 1.35729 1.96051 1.20399 0.95337 0.96402 0.98771 1.21003 1.02766 0.93540 1.06836 0.90895 0.86132 0.89244 0.95058 0.90224 0.85488 0.93214 0.84673 0.83887 0.84943 0.83677 0.89619 0.89634 0.93493 0.93499 0.77449 0.89625 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.03 10.79 55.55 0.60 -19.43 16 2 C 0.07 1.77 5.28 -17.34 -0.09 1.68 16 3 Si 0.91 18.22 29.57 -169.99 -5.03 13.20 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.76 9.07 -37.74 -0.34 -12.10 16 8 H 0.08 1.88 7.86 -52.49 -0.41 1.47 16 9 C 0.11 2.84 5.55 -106.83 -0.59 2.24 16 10 C -0.16 -3.91 8.66 -38.87 -0.34 -4.24 16 11 C -0.08 -1.70 9.67 -39.66 -0.38 -2.08 16 12 C -0.22 -4.13 4.39 -104.33 -0.46 -4.59 16 13 C 0.12 1.82 4.17 -4.98 -0.02 1.80 16 14 N -0.54 -7.11 4.44 -228.55 -1.02 -8.12 16 15 C 0.05 0.72 4.96 -3.96 -0.02 0.70 16 16 C -0.59 -6.40 6.58 37.25 0.24 -6.15 16 17 S 2.41 26.51 5.35 -107.50 -0.57 25.94 16 18 O -0.94 -13.06 18.10 -57.80 -1.05 -14.10 16 19 O -0.95 -13.29 18.11 -57.80 -1.05 -14.34 16 20 C -0.60 -5.38 5.65 37.25 0.21 -5.17 16 21 C 0.10 1.07 1.94 -67.86 -0.13 0.94 16 22 H 0.06 0.64 7.93 -51.93 -0.41 0.23 16 23 C -0.12 -1.20 4.37 -26.73 -0.12 -1.32 16 24 C 0.07 0.63 6.88 37.16 0.26 0.89 16 25 O -0.57 -5.41 13.66 -35.23 -0.48 -5.89 16 26 C -0.09 -1.80 7.49 -39.66 -0.30 -2.09 16 27 C -0.22 -5.04 9.80 -38.88 -0.38 -5.42 16 28 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 29 H 0.12 3.10 6.19 -52.48 -0.32 2.77 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.03 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.08 1.16 6.37 -51.93 -0.33 0.83 16 33 H 0.13 1.99 4.80 -51.93 -0.25 1.74 16 34 H 0.05 0.62 7.93 -51.93 -0.41 0.21 16 35 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.13 0.91 6.35 -51.93 -0.33 0.58 16 38 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.09 0.96 6.11 -51.93 -0.32 0.65 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.33 6.31 -51.93 -0.33 0.01 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 1.77 9.12 45.56 0.42 2.18 16 44 H 0.09 1.50 8.05 -52.48 -0.42 1.07 16 45 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -31.90 366.00 -11.17 -43.07 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.64 Total: 9.10 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: -2.46 Total: -34.93 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: -0.42 Total: -27.56 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -2.57 Total: -34.33 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: 26.51 SS G_CDS: -0.57 Total: 25.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.90 -11.17 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932310277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.133 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds