Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99914 * 2 1 4 4 H 1.48500 * 109.46975 * 269.99848 * 3 2 1 5 5 H 1.48498 * 109.47463 * 30.00026 * 3 2 1 6 6 H 1.48504 * 109.46734 * 150.00351 * 3 2 1 7 7 C 1.39945 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99750 * 189.56943 * 7 2 1 9 9 C 1.41390 * 120.00111 * 9.56755 * 7 2 1 10 10 C 1.40717 * 120.24715 * 28.86458 * 9 7 2 11 11 C 1.37611 * 119.74791 * 179.97438 * 10 9 7 12 12 C 1.38639 * 120.24929 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.75104 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.47042 * 89.99891 * 13 12 11 15 15 C 1.46475 * 110.99452 * 49.75628 * 14 13 12 16 16 C 1.53188 * 109.89492 * 196.99654 * 15 14 13 17 17 S 1.81818 * 108.68095 * 297.36521 * 16 15 14 18 18 O 1.42093 * 108.70195 * 298.06362 * 17 16 15 19 19 O 1.42092 * 108.69953 * 166.57385 * 17 16 15 20 20 C 1.81820 * 101.01764 * 52.31802 * 17 16 15 21 21 C 1.46472 * 110.99988 * 175.61189 * 14 13 12 22 22 H 1.09005 * 109.40108 * 283.13156 * 21 14 13 23 23 C 1.52993 * 109.39945 * 42.87075 * 21 14 13 24 24 C 1.53007 * 109.47022 * 184.71713 * 23 21 14 25 25 O 1.42903 * 109.47184 * 183.85580 * 24 23 21 26 26 C 1.38635 * 120.49708 * 359.97438 * 12 11 10 27 27 C 1.37610 * 120.25079 * 359.97438 * 26 12 11 28 28 H 0.97002 * 119.99449 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.12532 * 0.04107 * 10 9 7 30 30 H 1.08005 * 119.87933 * 180.29276 * 11 10 9 31 31 H 1.08999 * 109.47874 * 209.99864 * 13 12 11 32 32 H 1.09003 * 109.47390 * 330.00227 * 13 12 11 33 33 H 1.08994 * 109.40057 * 317.12543 * 15 14 13 34 34 H 1.08996 * 109.39943 * 76.87327 * 15 14 13 35 35 H 1.08998 * 109.59718 * 177.60631 * 16 15 14 36 36 H 1.09002 * 109.60241 * 57.12544 * 16 15 14 37 37 H 1.09001 * 109.60131 * 187.92424 * 20 17 16 38 38 H 1.08999 * 109.73691 * 67.52132 * 20 17 16 39 39 H 1.08994 * 109.47334 * 304.71734 * 23 21 14 40 40 H 1.09000 * 109.47162 * 64.72093 * 23 21 14 41 41 H 1.08998 * 109.47084 * 303.86202 * 24 23 21 42 42 H 1.09005 * 109.46621 * 63.86304 * 24 23 21 43 43 H 0.96691 * 113.99830 * 180.02562 * 25 24 23 44 44 H 1.08008 * 119.87263 * 179.97438 * 26 12 11 45 45 H 1.07998 * 120.12860 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0766 -1.2185 0.1560 9 6 1.3157 -2.4280 -0.2024 10 6 0.1376 -2.4531 -0.9716 11 6 -0.5277 -3.6425 -1.1630 12 6 -0.0416 -4.8129 -0.6009 13 6 -0.7794 -6.1089 -0.8172 14 7 -0.2696 -6.7664 -2.0279 15 6 1.1934 -6.8371 -2.0103 16 6 1.7185 -7.1240 -3.4205 17 16 1.0995 -8.7485 -3.9531 18 8 1.6047 -9.7405 -3.0700 19 8 1.3156 -8.8823 -5.3511 20 6 -0.6837 -8.5558 -3.6545 21 6 -0.8912 -8.0797 -2.2134 22 1 -0.4380 -8.7950 -1.5270 23 6 -2.3898 -7.9782 -1.9225 24 6 -3.0199 -9.3703 -2.0009 25 8 -4.4332 -9.2644 -1.8181 26 6 1.1181 -4.7999 0.1587 27 6 1.8003 -3.6223 0.3623 28 1 -0.4849 0.8401 0.0004 29 1 -0.2425 -1.5426 -1.4109 30 1 -1.4295 -3.6650 -1.7569 31 1 -0.6270 -6.7618 0.0422 32 1 -1.8439 -5.9059 -0.9350 33 1 1.5975 -5.8875 -1.6597 34 1 1.5092 -7.6342 -1.3373 35 1 2.8084 -7.1334 -3.4098 36 1 1.3638 -6.3546 -4.1063 37 1 -1.1841 -9.5133 -3.7989 38 1 -1.0952 -7.8202 -4.3456 39 1 -2.5391 -7.5675 -0.9240 40 1 -2.8593 -7.3250 -2.6581 41 1 -2.8115 -9.8091 -2.9766 42 1 -2.5991 -10.0040 -1.2201 43 1 -4.8991 -10.1109 -1.8553 44 1 1.4875 -5.7176 0.5922 45 1 2.7037 -3.6145 0.9540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932310277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = -116.015204 kcal Electronic energy + Delta-G solvation = -27792.658737 eV Core-core repulsion = 23901.178275 eV Total energy + Delta-G solvation = -3891.480462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64075 -39.06812 -38.06198 -37.63043 -37.10496 -35.68779 -34.29721 -33.02397 -31.20271 -30.85222 -29.90414 -27.84541 -25.62312 -25.00424 -23.16038 -22.67090 -21.89669 -20.92416 -19.84089 -19.18624 -18.54130 -17.67369 -17.46407 -17.19059 -16.94889 -16.73456 -16.47442 -15.84736 -15.79094 -15.65019 -15.30543 -15.10633 -14.48248 -14.27469 -13.98115 -13.90687 -13.75385 -13.54372 -13.34738 -13.27325 -13.14697 -13.07786 -12.94825 -12.85513 -12.73862 -12.69372 -12.30785 -12.13082 -12.00900 -11.92673 -11.52326 -11.41322 -11.19669 -11.12460 -10.96146 -10.77550 -9.40839 -9.30992 -9.05848 -8.56412 -6.34233 -0.93123 0.94512 1.16833 1.38382 1.48902 1.51288 1.69548 2.21698 2.54678 2.66990 2.85384 3.02733 3.34159 3.49090 3.74431 3.78187 3.93129 3.97359 4.09022 4.22369 4.26804 4.37899 4.40945 4.41215 4.46833 4.56912 4.62448 4.67651 4.78118 4.89854 4.93197 5.03267 5.10620 5.14623 5.19146 5.23946 5.42183 5.48344 5.74124 5.87796 5.92556 6.14238 6.14441 6.28283 6.42782 6.75103 6.94249 6.97938 7.06486 8.38711 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.002966 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.276134 B = 9438.702042 C =10641.174874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.502 4.502 8 H 0.071 0.929 9 C 0.079 3.921 10 C -0.183 4.183 11 C -0.085 4.085 12 C -0.193 4.193 13 C 0.125 3.875 14 N -0.547 5.547 15 C 0.050 3.950 16 C -0.586 4.586 17 S 2.425 3.575 18 O -0.972 6.972 19 O -0.980 6.980 20 C -0.584 4.584 21 C 0.099 3.901 22 H 0.072 0.928 23 C -0.115 4.115 24 C 0.071 3.929 25 O -0.595 6.595 26 C -0.086 4.086 27 C -0.236 4.236 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.398 0.602 44 H 0.116 0.884 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 -16.497 -5.211 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.077 3.923 10 C -0.203 4.203 11 C -0.104 4.104 12 C -0.195 4.195 13 C -0.001 4.001 14 N -0.272 5.272 15 C -0.078 4.078 16 C -0.717 4.717 17 S 2.612 3.388 18 O -0.969 6.969 19 O -0.977 6.977 20 C -0.715 4.715 21 C -0.010 4.010 22 H 0.090 0.910 23 C -0.154 4.154 24 C -0.007 4.007 25 O -0.404 6.404 26 C -0.104 4.104 27 C -0.255 4.255 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.248 0.752 44 H 0.134 0.866 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.471 -16.214 -5.899 17.824 hybrid contribution 0.182 0.809 0.943 1.256 sum -4.289 -15.405 -4.956 16.742 Atomic orbital electron populations 1.69855 1.08688 1.30070 1.37500 1.26683 0.95620 1.04263 0.91565 0.85214 0.78929 0.76242 0.79370 1.18807 1.19420 1.18442 1.19836 0.95691 0.91852 1.45885 0.91069 1.17962 0.92396 0.92959 0.88963 1.21337 0.99232 0.97034 1.02707 1.20754 0.98553 0.92422 0.98641 1.19270 0.99063 0.94356 1.06795 1.20779 0.98679 0.91216 0.89390 1.61327 1.05563 1.19867 1.40445 1.21956 0.87777 1.04862 0.93238 1.30151 1.12518 1.22114 1.06930 1.07580 0.79687 0.77609 0.73924 1.93536 1.78956 1.56877 1.67573 1.93542 1.85418 1.86561 1.32158 1.30299 1.23062 1.12850 1.05310 1.21219 0.96572 0.90082 0.93169 0.91040 1.21615 0.92159 0.97924 1.03694 1.22295 0.80967 0.96484 1.00971 1.86434 1.20016 1.37763 1.96177 1.20691 0.95044 0.96505 0.98169 1.21185 1.03290 0.94001 1.07061 0.90469 0.88376 0.87685 0.93572 0.89363 0.88112 0.92204 0.83467 0.83342 0.81972 0.82165 0.90576 0.90361 0.91581 0.92418 0.75188 0.86608 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.58 10.79 21.83 0.24 -43.34 16 2 C 0.03 1.61 5.28 85.26 0.45 2.06 16 3 Si 0.98 38.42 29.57 68.60 2.03 40.45 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.50 -26.86 9.07 23.46 0.21 -26.64 16 8 H 0.07 3.69 7.86 -2.91 -0.02 3.67 16 9 C 0.08 4.16 5.55 -21.29 -0.12 4.04 16 10 C -0.18 -9.30 8.66 22.73 0.20 -9.10 16 11 C -0.08 -3.62 9.67 22.22 0.21 -3.41 16 12 C -0.19 -7.14 4.39 -19.68 -0.09 -7.22 16 13 C 0.12 3.43 4.17 85.55 0.36 3.79 16 14 N -0.55 -12.78 4.44 -877.00 -3.90 -16.68 16 15 C 0.05 1.22 4.96 86.45 0.43 1.65 16 16 C -0.59 -11.73 6.58 72.04 0.47 -11.26 16 17 S 2.42 47.74 5.35 -56.49 -0.30 47.44 16 18 O -0.97 -24.70 18.10 -127.40 -2.31 -27.01 16 19 O -0.98 -25.72 18.11 -127.40 -2.31 -28.02 16 20 C -0.58 -8.32 5.65 72.04 0.41 -7.92 16 21 C 0.10 1.75 1.94 45.05 0.09 1.84 16 22 H 0.07 1.19 7.93 -2.38 -0.02 1.17 16 23 C -0.12 -2.01 4.37 30.59 0.13 -1.88 16 24 C 0.07 0.96 6.88 71.98 0.50 1.45 16 25 O -0.60 -9.45 13.66 -148.98 -2.04 -11.49 16 26 C -0.09 -3.31 7.49 22.22 0.17 -3.15 16 27 C -0.24 -10.91 9.80 22.73 0.22 -10.69 16 28 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 29 H 0.10 5.34 6.19 -2.91 -0.02 5.32 16 30 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 32 H 0.09 2.33 6.37 -2.39 -0.02 2.31 16 33 H 0.10 3.01 4.80 -2.39 -0.01 3.00 16 34 H 0.06 1.32 7.93 -2.39 -0.02 1.30 16 35 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.15 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.16 1.43 6.35 -2.39 -0.02 1.42 16 38 H 0.16 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.08 1.48 6.11 -2.39 -0.01 1.47 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 0.63 6.31 -2.39 -0.02 0.62 16 42 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.40 2.52 9.12 -74.06 -0.68 1.84 16 44 H 0.12 3.77 8.05 -2.91 -0.02 3.74 16 45 H 0.09 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -71.07 366.00 -4.60 -75.67 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.34 Total: 29.42 kcal Atomic # 6 Polarization: -70.08 SS G_CDS: 3.64 Total: -66.44 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -3.66 Total: -60.02 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -6.65 Total: -66.52 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 47.74 SS G_CDS: -0.30 Total: 47.44 kcal Total: -71.07 -4.60 -75.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932310277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.349 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds