Wall clock time and date at job start Sat Apr 11 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48498 * 109.47199 * 269.99834 * 3 2 1 5 5 H 1.48494 * 109.47364 * 30.00309 * 3 2 1 6 6 H 1.48501 * 109.46900 * 150.00544 * 3 2 1 7 7 C 1.39942 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99786 * 195.00902 * 7 2 1 9 9 C 1.41394 * 120.00005 * 15.01690 * 7 2 1 10 10 C 1.40719 * 120.24199 * 211.75234 * 9 7 2 11 11 C 1.37616 * 119.74681 * 179.97438 * 10 9 7 12 12 C 1.38641 * 120.24710 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.74763 * 179.97438 * 12 11 10 14 14 N 1.46895 * 109.46727 * 90.00401 * 13 12 11 15 15 C 1.46471 * 111.00269 * 310.31264 * 14 13 12 16 16 C 1.53176 * 109.89887 * 163.00432 * 15 14 13 17 17 S 1.81815 * 108.68155 * 62.63559 * 16 15 14 18 18 O 1.42108 * 108.70179 * 61.93735 * 17 16 15 19 19 O 1.42101 * 108.70474 * 193.28484 * 17 16 15 20 20 C 1.81817 * 101.01919 * 307.68200 * 17 16 15 21 21 C 1.46476 * 110.99780 * 184.45639 * 14 13 12 22 22 H 1.09004 * 109.32757 * 76.91367 * 21 14 13 23 23 C 1.53003 * 109.40150 * 317.13385 * 21 14 13 24 24 C 1.53000 * 109.47113 * 176.69040 * 23 21 14 25 25 O 1.42898 * 109.46578 * 183.90498 * 24 23 21 26 26 C 1.38637 * 120.50095 * 0.27947 * 12 11 10 27 27 C 1.37622 * 120.24663 * 359.44602 * 26 12 11 28 28 H 0.96999 * 120.00399 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.12590 * 359.95183 * 10 9 7 30 30 H 1.07999 * 119.87736 * 179.97438 * 11 10 9 31 31 H 1.09004 * 109.47237 * 330.00238 * 13 12 11 32 32 H 1.09001 * 109.46791 * 210.00453 * 13 12 11 33 33 H 1.08997 * 109.39693 * 42.87128 * 15 14 13 34 34 H 1.09004 * 109.39544 * 283.13341 * 15 14 13 35 35 H 1.09001 * 109.60241 * 302.87714 * 16 15 14 36 36 H 1.09001 * 109.60070 * 182.39462 * 16 15 14 37 37 H 1.09008 * 109.60174 * 172.07046 * 20 17 16 38 38 H 1.08994 * 109.60110 * 292.39370 * 20 17 16 39 39 H 1.09000 * 109.46649 * 296.69333 * 23 21 14 40 40 H 1.08997 * 109.47204 * 56.68508 * 23 21 14 41 41 H 1.08995 * 109.46905 * 303.90661 * 24 23 21 42 42 H 1.09003 * 109.46857 * 63.90677 * 24 23 21 43 43 H 0.96704 * 114.00021 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.87559 * 179.69982 * 26 12 11 45 45 H 1.07999 * 120.12678 * 180.27656 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.6999 7 6 2.0079 -1.2120 -0.0005 8 1 3.0602 -1.2280 0.2417 9 6 1.3371 -2.4154 -0.3184 10 6 1.7373 -3.6275 0.2739 11 6 1.0769 -4.7928 -0.0424 12 6 0.0207 -4.7753 -0.9403 13 6 -0.6941 -6.0580 -1.2790 14 7 -1.8103 -6.2576 -0.3452 15 6 -1.3696 -6.0952 1.0422 16 6 -2.5828 -5.8857 1.9535 17 16 -3.6278 -7.3719 1.8828 18 8 -2.8802 -8.4781 2.3695 19 8 -4.8874 -7.0715 2.4680 20 6 -3.8446 -7.5592 0.0874 21 6 -2.4645 -7.5475 -0.5772 22 1 -1.8521 -8.3438 -0.1541 23 6 -2.6232 -7.7735 -2.0821 24 6 -3.2309 -9.1557 -2.3290 25 8 -3.2950 -9.4035 -3.7348 26 6 -0.3787 -3.5877 -1.5338 27 6 0.2636 -2.4096 -1.2281 28 1 -0.4851 0.8400 0.0004 29 1 2.5598 -3.6434 0.9737 30 1 1.3825 -5.7243 0.4106 31 1 0.0011 -6.8936 -1.1983 32 1 -1.0781 -6.0019 -2.2976 33 1 -0.7096 -5.2307 1.1135 34 1 -0.8298 -6.9882 1.3575 35 1 -3.1524 -5.0216 1.6113 36 1 -2.2471 -5.7230 2.9777 37 1 -4.3442 -8.5047 -0.1239 38 1 -4.4450 -6.7346 -0.2964 39 1 -3.2795 -7.0085 -2.4971 40 1 -1.6470 -7.7145 -2.5633 41 1 -2.6104 -9.9155 -1.8540 42 1 -4.2356 -9.1914 -1.9075 43 1 -3.6705 -10.2643 -3.9658 44 1 -1.1996 -3.5865 -2.2356 45 1 -0.0520 -1.4849 -1.6882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932310278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:13 Heat of formation + Delta-G solvation = -117.423368 kcal Electronic energy + Delta-G solvation = -27863.913165 eV Core-core repulsion = 23972.371640 eV Total energy + Delta-G solvation = -3891.541525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.64275 -39.07043 -38.06271 -37.62296 -37.11649 -35.66795 -34.30529 -33.03453 -31.22105 -30.88026 -29.89359 -27.83807 -25.62813 -25.00124 -23.16457 -22.69042 -21.90941 -20.92876 -19.85225 -19.17280 -18.55766 -17.61275 -17.47887 -17.17101 -16.96820 -16.74582 -16.52865 -15.83101 -15.78822 -15.65150 -15.31646 -15.12232 -14.49807 -14.26756 -14.01997 -13.90402 -13.77356 -13.47710 -13.38915 -13.29169 -13.17036 -13.09631 -12.97559 -12.97010 -12.74368 -12.51480 -12.33864 -12.17269 -12.03941 -11.95000 -11.52019 -11.38049 -11.24094 -11.09155 -10.96109 -10.77579 -9.40664 -9.31531 -9.05870 -8.60427 -6.33416 -0.94399 0.94352 1.14841 1.38203 1.48399 1.50312 1.68343 2.21851 2.53976 2.66397 2.84359 3.01738 3.34007 3.49109 3.74052 3.76046 3.92309 3.96175 4.08790 4.22734 4.25806 4.37901 4.39914 4.42219 4.47514 4.55594 4.62586 4.67507 4.77595 4.88314 4.92117 5.02661 5.08885 5.14265 5.19813 5.24222 5.36861 5.45507 5.73802 5.87666 5.91551 6.12698 6.13898 6.25495 6.42453 6.73090 6.94895 6.97315 7.05070 8.38495 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.003069 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.733220 B = 9121.669146 C =10228.579884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.037 3.963 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.085 3.915 10 C -0.235 4.235 11 C -0.084 4.084 12 C -0.193 4.193 13 C 0.125 3.875 14 N -0.548 5.548 15 C 0.052 3.948 16 C -0.589 4.589 17 S 2.425 3.575 18 O -0.971 6.971 19 O -0.980 6.980 20 C -0.582 4.582 21 C 0.099 3.901 22 H 0.072 0.928 23 C -0.114 4.114 24 C 0.071 3.929 25 O -0.595 6.595 26 C -0.083 4.083 27 C -0.181 4.181 28 H 0.285 0.715 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.398 0.602 44 H 0.107 0.893 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 -15.680 -2.808 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.177 4.177 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.540 4.540 8 H 0.089 0.911 9 C 0.083 3.917 10 C -0.255 4.255 11 C -0.103 4.103 12 C -0.194 4.194 13 C -0.001 4.001 14 N -0.274 5.274 15 C -0.077 4.077 16 C -0.719 4.719 17 S 2.612 3.388 18 O -0.969 6.969 19 O -0.977 6.977 20 C -0.714 4.714 21 C -0.010 4.010 22 H 0.090 0.910 23 C -0.153 4.153 24 C -0.007 4.007 25 O -0.404 6.404 26 C -0.102 4.102 27 C -0.201 4.201 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.248 0.752 44 H 0.125 0.875 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.458 -15.137 -2.149 17.472 hybrid contribution 0.979 0.661 -0.105 1.186 sum -7.479 -14.476 -2.255 16.449 Atomic orbital electron populations 1.69853 1.08743 1.30246 1.37005 1.26618 0.95481 1.04084 0.91487 0.85285 0.79062 0.76466 0.79379 1.18826 1.19479 1.18436 1.19778 0.97201 0.92402 1.44629 0.91090 1.17920 0.91686 0.92974 0.89102 1.21213 1.04973 0.93913 1.05364 1.20714 0.95603 0.96652 0.97327 1.19279 1.00827 0.94602 1.04698 1.20802 0.89736 0.93438 0.96097 1.61315 1.30858 1.31238 1.03967 1.21928 0.95184 1.04079 0.86492 1.30163 1.11993 1.20966 1.08803 1.07592 0.75034 0.76954 0.79208 1.93535 1.73223 1.50715 1.79384 1.93541 1.42165 1.85584 1.76422 1.30276 1.05530 1.14311 1.21273 1.21241 0.91942 0.90659 0.97179 0.90995 1.21601 1.03001 0.97630 0.93044 1.22284 1.00515 0.96149 0.81763 1.86431 1.87201 1.42953 1.23806 1.20735 0.98013 0.92341 0.99086 1.21131 1.01047 0.96673 1.01255 0.90441 0.88843 0.86566 0.93376 0.89097 0.88415 0.92090 0.83698 0.83755 0.81786 0.82165 0.90320 0.90444 0.92372 0.91591 0.75179 0.87511 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.58 11.30 21.83 0.25 -43.34 16 2 C 0.04 1.88 5.15 85.26 0.44 2.32 16 3 Si 0.98 38.53 29.59 68.60 2.03 40.56 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.51 -27.32 9.03 23.46 0.21 -27.11 16 8 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 9 C 0.09 4.46 5.49 -21.29 -0.12 4.35 16 10 C -0.24 -10.90 9.80 22.73 0.22 -10.68 16 11 C -0.08 -3.27 7.49 22.22 0.17 -3.10 16 12 C -0.19 -7.07 4.39 -19.67 -0.09 -7.15 16 13 C 0.12 3.39 4.17 85.56 0.36 3.75 16 14 N -0.55 -13.19 4.44 -877.00 -3.90 -17.08 16 15 C 0.05 1.33 4.96 86.44 0.43 1.76 16 16 C -0.59 -13.02 6.57 72.04 0.47 -12.55 16 17 S 2.42 50.45 5.34 -56.49 -0.30 50.15 16 18 O -0.97 -25.48 18.10 -127.39 -2.31 -27.79 16 19 O -0.98 -26.91 18.11 -127.39 -2.31 -29.22 16 20 C -0.58 -8.57 5.63 72.04 0.41 -8.17 16 21 C 0.10 1.78 1.96 45.06 0.09 1.87 16 22 H 0.07 1.21 7.93 -2.38 -0.02 1.19 16 23 C -0.11 -1.96 4.33 30.60 0.13 -1.82 16 24 C 0.07 0.94 6.66 71.98 0.48 1.41 16 25 O -0.60 -9.21 13.66 -148.98 -2.03 -11.25 16 26 C -0.08 -3.51 9.67 22.22 0.21 -3.30 16 27 C -0.18 -9.15 8.65 22.73 0.20 -8.96 16 28 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 29 H 0.09 4.18 8.06 -2.91 -0.02 4.16 16 30 H 0.12 3.78 8.04 -2.91 -0.02 3.75 16 31 H 0.05 1.18 8.07 -2.38 -0.02 1.16 16 32 H 0.09 2.32 6.40 -2.39 -0.02 2.30 16 33 H 0.10 3.14 4.80 -2.39 -0.01 3.12 16 34 H 0.06 1.41 7.93 -2.38 -0.02 1.39 16 35 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.16 1.46 6.47 -2.38 -0.02 1.45 16 38 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.47 6.21 -2.39 -0.01 1.45 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.07 0.62 6.64 -2.39 -0.02 0.60 16 43 H 0.40 2.38 9.12 -74.05 -0.68 1.70 16 44 H 0.11 4.08 8.06 -2.91 -0.02 4.05 16 45 H 0.09 4.70 6.62 -2.91 -0.02 4.69 16 Total: -1.00 -71.28 367.03 -4.62 -75.90 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.34 Total: 29.44 kcal Atomic # 6 Polarization: -70.99 SS G_CDS: 3.61 Total: -67.37 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -3.65 Total: -60.42 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -6.65 Total: -68.25 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 16 Polarization: 50.45 SS G_CDS: -0.30 Total: 50.15 kcal Total: -71.28 -4.62 -75.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932310278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.524 kcal (2) G-P(sol) polarization free energy of solvation -71.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds