Wall clock time and date at job start Sat Apr 11 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34638 * 116.99819 * 2 1 4 4 O 1.21513 * 120.00208 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99834 * 179.72501 * 3 2 1 6 6 C 1.46499 * 120.00199 * 180.27541 * 5 3 2 7 7 H 1.09002 * 110.63981 * 36.68998 * 6 5 3 8 8 C 1.55150 * 110.72033 * 160.02663 * 6 5 3 9 9 C 1.54911 * 101.58067 * 153.86988 * 8 6 5 10 10 N 1.47424 * 104.83312 * 322.98959 * 9 8 6 11 11 C 1.34769 * 125.65059 * 204.09756 * 10 9 8 12 12 O 1.21591 * 120.00522 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00173 * 0.03811 * 11 10 9 14 14 C 1.46501 * 120.00333 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.46850 * 34.99910 * 14 13 11 16 16 C 1.50698 * 109.47386 * 154.99711 * 14 13 11 17 17 H 1.08001 * 119.99734 * 0.02562 * 16 14 13 18 18 C 1.37873 * 120.00417 * 179.97438 * 16 14 13 19 19 N 1.31511 * 119.99809 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00201 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47355 * 90.00198 * 20 18 16 22 22 H 1.48498 * 109.46899 * 210.00237 * 20 18 16 23 23 H 1.48502 * 109.47070 * 329.99707 * 20 18 16 24 24 C 1.53002 * 109.47135 * 274.99804 * 14 13 11 25 25 F 1.39907 * 109.46582 * 60.00002 * 24 14 13 26 26 F 1.39897 * 109.46845 * 179.97438 * 24 14 13 27 27 F 1.39895 * 109.47429 * 300.00124 * 24 14 13 28 28 C 1.47026 * 108.70162 * 24.12605 * 10 9 8 29 29 H 1.08997 * 109.47282 * 59.99663 * 1 2 3 30 30 H 1.08999 * 109.46798 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47240 * 299.99654 * 1 2 3 32 32 H 0.97001 * 119.99727 * 0.28438 * 5 3 2 33 33 H 1.09000 * 111.00849 * 271.93892 * 8 6 5 34 34 H 1.08999 * 111.00644 * 35.79187 * 8 6 5 35 35 H 1.09003 * 110.36805 * 204.15343 * 9 8 6 36 36 H 1.08998 * 110.46111 * 81.87620 * 9 8 6 37 37 H 0.97000 * 119.99711 * 359.97438 * 13 11 10 38 38 H 0.97000 * 120.00783 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.88494 * 239.52662 * 28 10 9 40 40 H 1.09002 * 110.00661 * 118.42820 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2702 0.0056 6 6 4.0742 2.5755 0.0117 7 1 3.5174 3.2876 0.6208 8 6 5.5366 2.4441 0.5129 9 6 6.2113 3.6573 -0.1746 10 7 5.5709 3.7443 -1.4997 11 6 6.1085 4.3148 -2.5960 12 8 5.4867 4.3294 -3.6408 13 7 7.3355 4.8689 -2.5344 14 6 7.9198 5.4895 -3.7259 15 1 7.1327 5.9660 -4.3103 16 6 8.9320 6.5247 -3.3081 17 1 9.1215 6.7023 -2.2598 18 6 9.6169 7.2444 -4.2641 19 7 9.3865 7.0278 -5.5406 20 14 10.8722 8.5272 -3.7461 21 1 12.2085 7.8913 -3.6245 22 1 10.9279 9.6052 -4.7659 23 1 10.4778 9.1051 -2.4362 24 6 8.6070 4.4176 -4.5743 25 9 7.6671 3.4565 -4.9622 26 9 9.1643 5.0102 -5.7125 27 9 9.6171 3.8059 -3.8243 28 6 4.2482 3.1063 -1.4269 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9374 0.4567 0.0055 33 1 5.5872 2.5323 1.5982 34 1 5.9820 1.5074 0.1775 35 1 7.2824 3.4855 -0.2816 36 1 6.0289 4.5683 0.3954 37 1 7.8316 4.8574 -1.7009 38 1 9.8680 7.5343 -6.2133 39 1 4.1957 2.2801 -2.1358 40 1 3.4695 3.8359 -1.6495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932890224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:19 Heat of formation + Delta-G solvation = -231.226647 kcal Electronic energy + Delta-G solvation = -30699.791161 eV Core-core repulsion = 25715.164801 eV Total energy + Delta-G solvation = -4984.626360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.31514 -45.96834 -45.58334 -40.82745 -39.80577 -37.92827 -36.49622 -34.66795 -34.49075 -32.55929 -30.79947 -29.09563 -28.16404 -27.23159 -24.56563 -23.77162 -22.11601 -21.56646 -20.90047 -19.56536 -19.05381 -18.23914 -17.38227 -16.85757 -16.82519 -16.69744 -16.61031 -16.22687 -15.71534 -15.22846 -14.75115 -14.57479 -14.42999 -14.16437 -13.79181 -13.51074 -13.18404 -12.89861 -12.84588 -12.52878 -12.42121 -12.36854 -12.35952 -12.26429 -12.12123 -11.94074 -11.87295 -11.77764 -11.19109 -11.13981 -11.05176 -10.88501 -10.85752 -10.77709 -10.39018 -9.69245 -9.62620 -9.49406 -8.72989 -8.52849 -8.11134 -6.22873 -4.46993 1.83559 2.52932 2.96451 3.18969 3.25305 3.28007 3.72531 3.93380 4.14816 4.19733 4.31024 4.52793 4.66691 4.77104 4.85073 4.93152 4.94171 4.98088 5.11396 5.19834 5.44615 5.49280 5.61866 5.75101 5.81620 5.89158 5.91096 6.01569 6.09712 6.21500 6.39960 6.88290 7.05848 7.21389 7.38449 7.61660 7.65945 8.03027 8.49015 8.59267 9.13322 9.24317 10.68734 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.002676 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.190777 B =10462.526998 C =10873.788226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.647 3.353 4 O -0.567 6.567 5 N -0.699 5.699 6 C 0.152 3.848 7 H 0.110 0.890 8 C -0.136 4.136 9 C 0.102 3.898 10 N -0.641 5.641 11 C 0.718 3.282 12 O -0.577 6.577 13 N -0.723 5.723 14 C 0.262 3.738 15 H 0.085 0.915 16 C -0.551 4.551 17 H 0.077 0.923 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.916 3.084 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.416 3.584 25 F -0.217 7.217 26 F -0.137 7.137 27 F -0.210 7.210 28 C 0.117 3.883 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.409 0.591 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.394 0.606 38 H 0.268 0.732 39 H 0.069 0.931 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 -11.895 14.269 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.287 6.287 3 C 0.400 3.600 4 O -0.455 6.455 5 N -0.358 5.358 6 C 0.047 3.953 7 H 0.128 0.872 8 C -0.174 4.174 9 C -0.022 4.022 10 N -0.382 5.382 11 C 0.419 3.581 12 O -0.454 6.454 13 N -0.376 5.376 14 C 0.156 3.844 15 H 0.103 0.897 16 C -0.588 4.588 17 H 0.095 0.905 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.195 1.195 24 C 0.359 3.641 25 F -0.199 7.199 26 F -0.118 7.118 27 F -0.192 7.192 28 C -0.008 4.008 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.228 0.772 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.870 -11.305 13.141 19.948 hybrid contribution 1.159 -0.010 0.377 1.219 sum -8.711 -11.315 13.518 19.664 Atomic orbital electron populations 1.23213 0.74184 1.03505 1.02898 1.86238 1.24388 1.31036 1.87046 1.18166 0.83460 0.82269 0.76154 1.91035 1.64523 1.34824 1.55114 1.44585 1.03045 1.10015 1.78137 1.22009 0.93082 0.83490 0.96715 0.87175 1.23071 0.93208 0.99714 1.01417 1.22220 0.98302 0.97640 0.84056 1.47434 1.18622 1.62689 1.09500 1.15556 0.81955 0.78319 0.82222 1.90937 1.62261 1.63967 1.28223 1.45270 1.16040 1.61277 1.14985 1.19624 0.94859 0.87440 0.82475 0.89699 1.20860 1.23478 1.20128 0.94378 0.90505 1.25080 0.97247 0.97350 0.94736 1.70404 1.39984 1.36975 0.99879 0.86205 0.80766 0.80285 0.78522 1.20237 1.20803 1.19497 1.23179 0.77159 0.82218 0.81514 1.93076 1.66267 1.68264 1.92263 1.93401 1.85453 1.81143 1.51828 1.92977 1.63661 1.85221 1.77385 1.22061 0.84929 0.97967 0.95861 0.91659 0.87948 0.91805 0.75483 0.88791 0.89563 0.90044 0.90884 0.77224 0.92101 0.91286 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -3.59 10.62 -40.32 -0.43 -4.02 16 3 C 0.65 7.34 8.75 54.06 0.47 7.81 16 4 O -0.57 -8.25 15.86 -19.28 -0.31 -8.55 16 5 N -0.70 -6.24 5.13 -56.94 -0.29 -6.53 16 6 C 0.15 1.45 3.24 -66.10 -0.21 1.24 16 7 H 0.11 1.10 7.69 -51.93 -0.40 0.70 16 8 C -0.14 -0.98 6.69 -24.59 -0.16 -1.14 16 9 C 0.10 1.04 6.57 -2.53 -0.02 1.03 16 10 N -0.64 -9.83 3.33 -176.24 -0.59 -10.42 16 11 C 0.72 14.89 8.02 -86.92 -0.70 14.19 16 12 O -0.58 -14.49 15.24 5.29 0.08 -14.41 16 13 N -0.72 -15.03 4.95 -59.81 -0.30 -15.32 16 14 C 0.26 6.58 2.21 -69.08 -0.15 6.43 16 15 H 0.09 2.41 7.58 -51.93 -0.39 2.01 16 16 C -0.55 -14.01 8.47 -34.44 -0.29 -14.31 16 17 H 0.08 1.83 7.74 -52.49 -0.41 1.43 16 18 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 19 N -0.84 -23.07 9.50 55.43 0.53 -22.54 16 20 Si 0.92 19.99 29.54 -169.99 -5.02 14.97 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 C 0.42 10.78 2.81 37.16 0.10 10.89 16 25 F -0.22 -5.65 15.67 2.25 0.04 -5.62 16 26 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 27 F -0.21 -5.20 16.94 2.25 0.04 -5.16 16 28 C 0.12 1.61 6.62 -3.06 -0.02 1.59 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.41 2.66 8.63 -40.82 -0.35 2.30 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.57 8.00 -51.93 -0.42 0.15 16 35 H 0.08 0.80 7.30 -51.93 -0.38 0.42 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 6.99 7.02 -40.82 -0.29 6.70 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.07 1.02 8.03 -51.93 -0.42 0.61 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -34.40 349.27 -5.68 -40.08 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.72 Total: 5.30 kcal Atomic # 6 Polarization: 30.78 SS G_CDS: -0.01 Total: 30.77 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.65 Total: -54.82 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.65 Total: -26.99 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 0.10 Total: -14.58 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.40 -5.68 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932890224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.148 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds