Wall clock time and date at job start Sat Apr 11 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99888 * 2 1 4 4 C 1.53004 * 109.46961 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47261 * 64.99653 * 4 3 2 6 6 C 1.46222 * 124.85211 * 270.33160 * 5 4 3 7 7 N 1.46800 * 108.05302 * 180.17279 * 6 5 4 8 8 C 1.34776 * 127.03012 * 179.83842 * 7 6 5 9 9 O 1.21595 * 119.99868 * 359.71630 * 8 7 6 10 10 N 1.34776 * 120.00088 * 179.71076 * 8 7 6 11 11 C 1.46498 * 119.99949 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47683 * 34.99474 * 11 10 8 13 13 C 1.50694 * 109.47434 * 154.99861 * 11 10 8 14 14 H 1.08002 * 120.00084 * 116.83614 * 13 11 10 15 15 C 1.37875 * 120.00047 * 296.84148 * 13 11 10 16 16 N 1.31514 * 120.00060 * 173.81436 * 15 13 11 17 17 Si 1.86800 * 120.00083 * 353.81819 * 15 13 11 18 18 H 1.48495 * 109.47091 * 85.13462 * 17 15 13 19 19 H 1.48495 * 109.47400 * 205.13889 * 17 15 13 20 20 H 1.48501 * 109.46699 * 325.13786 * 17 15 13 21 21 C 1.53007 * 109.46921 * 275.00106 * 11 10 8 22 22 F 1.39902 * 109.46678 * 305.08949 * 21 11 10 23 23 F 1.39892 * 109.47460 * 65.08871 * 21 11 10 24 24 F 1.39895 * 109.47053 * 185.09599 * 21 11 10 25 25 C 1.46986 * 105.93894 * 359.58092 * 7 6 5 26 26 C 1.34292 * 124.85328 * 90.02521 * 5 4 3 27 27 O 1.21285 * 125.43020 * 0.02562 * 26 5 4 28 28 H 1.08996 * 109.47346 * 59.99968 * 1 2 3 29 29 H 1.09003 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47222 * 300.00114 * 1 2 3 31 31 H 1.08998 * 109.47719 * 59.99526 * 3 2 1 32 32 H 1.09005 * 109.46797 * 299.99645 * 3 2 1 33 33 H 1.09002 * 109.46949 * 304.99374 * 4 3 2 34 34 H 1.08999 * 109.47060 * 184.99630 * 4 3 2 35 35 H 1.09000 * 109.88608 * 60.44251 * 6 5 4 36 36 H 1.09002 * 109.62136 * 299.75332 * 6 5 4 37 37 H 0.96995 * 119.99695 * 0.02562 * 10 8 7 38 38 H 0.97006 * 120.00043 * 179.97438 * 16 15 13 39 39 H 1.08993 * 110.03966 * 119.53477 * 25 7 6 40 40 H 1.08996 * 110.03464 * 240.98509 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1346 -0.8742 -1.4620 7 7 4.5935 -1.0855 -2.8403 8 6 4.8634 -2.2649 -3.4341 9 8 4.7368 -3.3018 -2.8118 10 7 5.2735 -2.2949 -4.7176 11 6 5.5663 -3.5769 -5.3632 12 1 4.8799 -4.3369 -4.9900 13 6 5.3995 -3.4382 -6.8544 14 1 6.2483 -3.5758 -7.5079 15 6 4.1633 -3.1354 -7.3846 16 7 4.0410 -2.8944 -8.6717 17 14 2.6623 -3.0672 -6.2748 18 1 2.5652 -1.7209 -5.6557 19 1 1.4411 -3.3324 -7.0769 20 1 2.7875 -4.0941 -5.2094 21 6 7.0052 -3.9901 -5.0471 22 9 7.8782 -2.9629 -5.4214 23 9 7.1304 -4.2317 -3.6749 24 9 7.3228 -5.1534 -5.7563 25 6 4.6924 0.2518 -3.4422 26 6 4.2855 1.2351 -2.3741 27 8 4.2449 2.4400 -2.5066 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1765 0.0889 35 1 3.1803 -1.3785 -1.3100 36 1 4.8737 -1.2663 -0.7633 37 1 5.3747 -1.4677 -5.2138 38 1 3.1712 -2.6817 -9.0448 39 1 5.7180 0.4450 -3.7565 40 1 4.0191 0.3278 -4.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932903172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:23 Heat of formation + Delta-G solvation = -234.300578 kcal Electronic energy + Delta-G solvation = -31352.975261 eV Core-core repulsion = 26368.215605 eV Total energy + Delta-G solvation = -4984.759656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.09960 -46.60591 -46.58885 -41.02660 -39.16316 -38.12360 -36.69627 -34.93963 -34.38231 -32.52571 -30.60099 -28.92664 -28.50340 -26.72130 -25.05496 -24.98849 -23.28955 -21.51065 -20.11420 -20.08640 -18.63521 -17.75529 -17.56016 -17.13096 -16.86139 -16.69938 -16.57348 -16.38702 -15.81693 -15.63299 -15.42808 -15.17393 -14.49337 -14.40483 -14.09643 -13.55372 -13.49485 -13.47489 -13.11418 -13.05142 -12.98067 -12.89628 -12.79010 -12.78373 -12.68730 -12.58597 -12.40594 -12.23911 -11.79866 -11.52788 -11.22293 -10.71664 -10.36126 -10.23588 -10.02851 -9.95095 -9.80158 -9.37047 -9.04091 -8.70847 -8.34222 -6.56691 -4.70092 2.24266 2.28131 2.85794 3.06551 3.16815 3.27849 3.41959 3.44679 3.86271 4.06812 4.07941 4.16299 4.62076 4.68334 4.85290 4.91388 4.97153 5.02316 5.06016 5.08067 5.18409 5.22197 5.24919 5.29461 5.33766 5.41372 5.43234 5.51802 5.77453 6.04937 6.33710 6.73439 6.81853 6.86212 7.00979 7.24134 7.81964 7.83861 8.34578 8.47525 8.89862 8.97578 10.51220 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.004063 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.851892 B = 6890.293186 C = 7554.560099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.040 3.960 4 C 0.138 3.862 5 N -0.620 5.620 6 C 0.358 3.642 7 N -0.649 5.649 8 C 0.724 3.276 9 O -0.573 6.573 10 N -0.725 5.725 11 C 0.218 3.782 12 H 0.093 0.907 13 C -0.536 4.536 14 H 0.097 0.903 15 C 0.098 3.902 16 N -0.858 5.858 17 Si 0.879 3.121 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.256 1.256 21 C 0.441 3.559 22 F -0.190 7.190 23 F -0.192 7.192 24 F -0.184 7.184 25 C 0.066 3.934 26 C 0.524 3.476 27 O -0.520 6.520 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.399 0.601 38 H 0.275 0.725 39 H 0.109 0.891 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 7.875 15.354 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.038 4.038 4 C 0.016 3.984 5 N -0.355 5.355 6 C 0.149 3.851 7 N -0.392 5.392 8 C 0.427 3.573 9 O -0.450 6.450 10 N -0.381 5.381 11 C 0.115 3.885 12 H 0.111 0.889 13 C -0.573 4.573 14 H 0.115 0.885 15 C -0.112 4.112 16 N -0.491 5.491 17 Si 0.705 3.295 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.181 1.181 21 C 0.386 3.614 22 F -0.172 7.172 23 F -0.174 7.174 24 F -0.165 7.165 25 C -0.061 4.061 26 C 0.311 3.689 27 O -0.396 6.396 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.840 7.510 15.593 17.729 hybrid contribution -0.833 0.743 0.243 1.142 sum -4.674 8.253 15.836 18.459 Atomic orbital electron populations 1.22743 0.80762 1.03007 0.99855 1.87906 1.19970 1.27308 1.95415 1.23065 0.94066 0.85540 1.01109 1.21443 0.92305 0.99790 0.84857 1.48327 1.66746 1.07689 1.12773 1.21054 1.00819 0.79754 0.83503 1.47378 1.73617 1.04886 1.13361 1.15657 0.78156 0.81091 0.82434 1.90939 1.59812 1.29881 1.64342 1.46987 1.69901 1.11615 1.09603 1.20214 0.86973 0.85011 0.96270 0.88911 1.20833 0.98396 1.51597 0.86521 0.88487 1.24912 0.98797 0.92395 0.95098 1.69874 1.25662 1.41666 1.11900 0.86782 0.81775 0.80008 0.80932 1.19796 1.21189 1.18056 1.21492 0.92175 0.74574 0.73200 1.93084 1.72996 1.59757 1.91327 1.93150 1.96925 1.94454 1.32841 1.93109 1.94136 1.50468 1.78798 1.21888 1.04798 0.82443 0.96925 1.20535 0.76238 0.88378 0.83764 1.90766 1.54057 1.12852 1.81913 0.94095 0.89425 0.94094 0.91863 0.92680 0.88750 0.87779 0.89586 0.90426 0.76497 0.91438 0.87294 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.08 10.00 -35.23 -0.35 -4.44 16 3 C 0.04 0.35 6.28 37.16 0.23 0.58 16 4 C 0.14 1.18 6.37 -4.04 -0.03 1.16 16 5 N -0.62 -7.32 2.87 -177.57 -0.51 -7.83 16 6 C 0.36 4.78 7.48 -63.72 -0.48 4.30 16 7 N -0.65 -10.33 3.36 -184.00 -0.62 -10.95 16 8 C 0.72 14.23 7.93 -86.92 -0.69 13.54 16 9 O -0.57 -12.86 15.31 5.28 0.08 -12.78 16 10 N -0.72 -14.60 3.18 -59.81 -0.19 -14.79 16 11 C 0.22 4.92 1.41 -69.08 -0.10 4.82 16 12 H 0.09 2.22 6.29 -51.93 -0.33 1.89 16 13 C -0.54 -13.37 8.64 -34.44 -0.30 -13.67 16 14 H 0.10 2.64 7.92 -52.49 -0.42 2.22 16 15 C 0.10 2.49 5.46 -17.82 -0.10 2.39 16 16 N -0.86 -23.07 13.96 55.43 0.77 -22.30 16 17 Si 0.88 19.97 26.14 -169.99 -4.44 15.53 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.26 -6.02 6.56 56.52 0.37 -5.65 16 21 C 0.44 9.55 2.79 37.16 0.10 9.65 16 22 F -0.19 -4.00 16.97 2.25 0.04 -3.96 16 23 F -0.19 -4.14 15.83 2.25 0.04 -4.10 16 24 F -0.18 -4.01 16.84 2.25 0.04 -3.97 16 25 C 0.07 0.91 6.36 -4.89 -0.03 0.87 16 26 C 0.52 7.17 8.13 -11.17 -0.09 7.08 16 27 O -0.52 -8.29 17.67 5.55 0.10 -8.19 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.80 7.98 -51.93 -0.41 0.39 16 35 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 7.43 7.68 -40.82 -0.31 7.11 16 38 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -30.89 353.78 -4.91 -35.80 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.83 Total: 4.55 kcal Atomic # 6 Polarization: 32.46 SS G_CDS: -0.36 Total: 32.10 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.55 Total: -55.87 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.17 Total: -25.41 kcal Atomic # 9 Polarization: -12.14 SS G_CDS: 0.11 Total: -12.03 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.44 Total: 15.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.89 -4.91 -35.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932903172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.503 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds