Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34632 * 117.00226 * 2 1 4 4 O 1.21508 * 120.00007 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00001 * 180.02562 * 3 2 1 6 6 C 1.46962 * 120.59434 * 179.97438 * 5 3 2 7 7 C 1.53375 * 108.63431 * 235.20528 * 6 5 3 8 8 N 1.46965 * 108.63246 * 310.57158 * 7 6 5 9 9 C 1.34778 * 120.59527 * 235.19944 * 8 7 6 10 10 O 1.21588 * 119.99850 * 174.71336 * 9 8 7 11 11 N 1.34777 * 119.99857 * 354.72409 * 9 8 7 12 12 C 1.46503 * 119.99666 * 184.88280 * 11 9 8 13 13 H 1.08991 * 109.47282 * 34.99394 * 12 11 9 14 14 C 1.50696 * 109.46821 * 154.99918 * 12 11 9 15 15 H 1.08010 * 119.99921 * 114.85240 * 14 12 11 16 16 C 1.37877 * 120.00182 * 294.84408 * 14 12 11 17 17 N 1.31509 * 120.00403 * 184.90328 * 16 14 12 18 18 Si 1.86804 * 119.99682 * 4.91089 * 16 14 12 19 19 H 1.48503 * 109.47157 * 94.91171 * 18 16 14 20 20 H 1.48502 * 109.46828 * 214.91031 * 18 16 14 21 21 H 1.48501 * 109.47204 * 334.90717 * 18 16 14 22 22 C 1.53003 * 109.47011 * 274.99698 * 12 11 9 23 23 F 1.39899 * 109.46904 * 65.01777 * 22 12 11 24 24 F 1.39892 * 109.47232 * 185.02120 * 22 12 11 25 25 F 1.39909 * 109.46996 * 305.02290 * 22 12 11 26 26 C 1.46966 * 118.80786 * 55.48425 * 8 7 6 27 27 C 1.46965 * 120.59530 * 359.97438 * 5 3 2 28 28 H 1.08999 * 109.46760 * 300.00360 * 1 2 3 29 29 H 1.09000 * 109.47063 * 59.99982 * 1 2 3 30 30 H 1.08997 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.61187 * 115.46152 * 6 5 3 32 32 H 1.09003 * 109.75010 * 355.03296 * 6 5 3 33 33 H 1.09003 * 109.60688 * 190.83347 * 7 6 5 34 34 H 1.08998 * 109.75418 * 70.40485 * 7 6 5 35 35 H 0.97000 * 120.00489 * 4.88175 * 11 9 8 36 36 H 0.96995 * 120.00675 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.61386 * 64.26712 * 26 8 7 38 38 H 1.09001 * 109.60797 * 184.77129 * 26 8 7 39 39 H 1.09003 * 109.61168 * 244.54349 * 27 5 3 40 40 H 1.09002 * 109.60778 * 5.04854 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2186 -0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.0900 2.5725 -0.0011 7 6 5.0516 2.6223 -1.1950 8 7 5.8647 1.3981 -1.1944 9 6 7.2107 1.4686 -1.1950 10 8 7.8726 0.4534 -1.0975 11 7 7.8228 2.6644 -1.3035 12 6 9.2822 2.7331 -1.4119 13 1 9.6446 1.8788 -1.9835 14 6 9.6744 4.0087 -2.1118 15 1 10.2309 4.7669 -1.5808 16 6 9.3229 4.2079 -3.4301 17 7 9.7467 5.2761 -4.0695 18 14 8.2445 2.9605 -4.3079 19 1 6.8257 3.3922 -4.2318 20 1 8.6570 2.8643 -5.7312 21 1 8.3937 1.6333 -3.6585 22 6 9.8993 2.7089 -0.0120 23 9 9.6310 1.4772 0.5946 24 9 11.2831 2.8895 -0.1092 25 9 9.3476 3.7382 0.7586 26 6 5.1839 0.0957 -1.1995 27 6 4.2224 0.0458 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.6511 2.6924 0.9257 32 1 3.3549 3.3723 -0.0898 33 1 5.7012 3.4930 -1.1053 34 1 4.4835 2.6838 -2.1232 35 1 7.2971 3.4796 -1.3098 36 1 9.4992 5.4165 -4.9967 37 1 4.6228 -0.0202 -2.1267 38 1 5.9209 -0.7027 -1.1129 39 1 4.7928 -0.0145 0.9264 40 1 3.5727 -0.8248 -0.0904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932923214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -258.573438 kcal Electronic energy + Delta-G solvation = -31612.821149 eV Core-core repulsion = 26627.008943 eV Total energy + Delta-G solvation = -4985.812206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.84243 -48.34725 -48.32801 -41.93347 -41.16073 -38.84320 -37.38063 -36.70373 -35.34355 -34.39916 -32.54561 -30.97757 -29.17356 -27.82095 -26.92660 -25.07356 -24.25163 -23.09139 -21.94915 -20.82933 -20.30499 -19.47961 -19.29813 -18.65924 -18.53027 -18.31567 -17.95544 -17.63056 -17.29698 -16.46924 -16.28767 -15.98548 -15.62000 -15.46543 -15.28000 -15.19779 -15.03953 -14.82770 -14.79267 -14.67686 -14.56264 -14.52599 -14.45644 -13.97129 -13.59230 -13.55072 -13.03367 -12.94783 -12.83088 -12.55628 -12.51691 -12.40964 -12.01996 -11.84945 -11.80331 -11.66931 -11.31480 -10.98440 -10.51301 -10.17556 -9.42918 -8.52391 -6.71065 0.98130 1.24486 1.35243 1.46452 1.56666 1.62821 1.91763 2.15719 2.27556 2.63499 2.82801 3.04408 3.24056 3.40774 3.59391 3.70322 3.78062 3.98555 4.07915 4.24831 4.35324 4.37745 4.38708 4.49916 4.54921 4.67937 4.72665 4.74791 4.89467 4.97073 5.17518 5.21180 5.39087 5.44421 5.76705 5.94559 6.16011 6.44191 6.91782 7.00294 7.10243 7.49868 8.59633 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003844 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.174921 B = 7282.530537 C = 8049.137679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.370 6.370 3 C 0.649 3.351 4 O -0.603 6.603 5 N -0.592 5.592 6 C 0.120 3.880 7 C 0.093 3.907 8 N -0.633 5.633 9 C 0.696 3.304 10 O -0.612 6.612 11 N -0.731 5.731 12 C 0.233 3.767 13 H 0.077 0.923 14 C -0.539 4.539 15 H 0.065 0.935 16 C 0.061 3.939 17 N -0.902 5.902 18 Si 0.936 3.064 19 H -0.251 1.251 20 H -0.293 1.293 21 H -0.264 1.264 22 C 0.444 3.556 23 F -0.188 7.188 24 F -0.188 7.188 25 F -0.186 7.186 26 C 0.113 3.887 27 C 0.108 3.892 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.405 0.595 36 H 0.279 0.721 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.013 -10.040 6.372 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.283 6.283 3 C 0.404 3.596 4 O -0.495 6.495 5 N -0.332 5.332 6 C -0.002 4.002 7 C -0.031 4.031 8 N -0.371 5.371 9 C 0.399 3.601 10 O -0.492 6.492 11 N -0.390 5.390 12 C 0.128 3.872 13 H 0.094 0.906 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.761 3.239 19 H -0.175 1.175 20 H -0.219 1.219 21 H -0.189 1.189 22 C 0.388 3.612 23 F -0.170 7.170 24 F -0.170 7.170 25 F -0.168 7.168 26 C -0.010 4.010 27 C -0.014 4.014 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.795 -10.393 6.297 20.730 hybrid contribution -0.271 0.371 -0.338 0.570 sum -17.066 -10.022 5.960 20.669 Atomic orbital electron populations 1.23499 0.72740 1.05630 1.02505 1.86234 1.25738 1.29706 1.86659 1.18145 0.83229 0.82369 0.75835 1.90972 1.64846 1.36049 1.57619 1.46909 1.01807 1.09133 1.75348 1.22029 0.95235 0.84236 0.98697 1.22210 0.93945 0.87338 0.99571 1.47366 1.03000 1.08461 1.78268 1.16292 0.82303 0.84212 0.77330 1.90867 1.64514 1.35167 1.58638 1.46588 1.07589 1.07461 1.77375 1.19766 0.79253 1.00879 0.87317 0.90572 1.20756 1.37978 1.01884 0.97133 0.91708 1.25497 0.95479 0.96442 0.97073 1.69950 1.43317 1.28264 1.12141 0.85907 0.80356 0.80246 0.77364 1.17534 1.21941 1.18865 1.21393 0.76410 0.72649 0.90751 1.93161 1.93610 1.44321 1.85887 1.93099 1.32219 1.95137 1.96529 1.93082 1.85455 1.60026 1.78240 1.22076 0.95347 0.84773 0.98839 1.22282 0.93598 0.86826 0.98737 0.92093 0.92164 0.84578 0.89445 0.87060 0.88146 0.89932 0.75547 0.91136 0.90104 0.88119 0.90104 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.56 113.37 1.20 1.80 16 2 O -0.37 -6.74 9.20 -55.41 -0.51 -7.25 16 3 C 0.65 14.92 8.43 129.79 1.09 16.01 16 4 O -0.60 -17.27 15.54 19.82 0.31 -16.96 16 5 N -0.59 -12.19 2.95 -947.56 -2.79 -14.99 16 6 C 0.12 2.43 6.59 86.42 0.57 3.00 16 7 C 0.09 2.11 6.56 86.42 0.57 2.68 16 8 N -0.63 -17.69 2.94 -835.22 -2.46 -20.14 16 9 C 0.70 25.68 7.11 179.05 1.27 26.95 16 10 O -0.61 -26.38 14.12 -3.99 -0.06 -26.44 16 11 N -0.73 -28.13 2.78 -461.41 -1.28 -29.41 16 12 C 0.23 10.44 1.36 44.24 0.06 10.50 16 13 H 0.08 3.67 6.56 -2.39 -0.02 3.65 16 14 C -0.54 -27.28 8.65 25.60 0.22 -27.05 16 15 H 0.06 3.64 7.95 -2.91 -0.02 3.62 16 16 C 0.06 3.11 5.47 84.66 0.46 3.57 16 17 N -0.90 -49.29 13.96 21.45 0.30 -48.99 16 18 Si 0.94 40.38 26.03 68.60 1.79 42.16 16 19 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.26 -11.81 5.80 99.48 0.58 -11.23 16 22 C 0.44 19.16 2.79 71.98 0.20 19.36 16 23 F -0.19 -8.04 15.63 44.97 0.70 -7.34 16 24 F -0.19 -8.35 16.86 44.97 0.76 -7.59 16 25 F -0.19 -7.72 16.97 44.97 0.76 -6.95 16 26 C 0.11 2.51 6.63 86.55 0.57 3.08 16 27 C 0.11 1.92 6.62 86.55 0.57 2.49 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.14 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 2.25 7.00 -2.39 -0.02 2.23 16 33 H 0.10 2.25 5.62 -2.39 -0.01 2.23 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.40 14.06 6.05 -92.71 -0.56 13.50 16 36 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 38 H 0.10 2.48 6.99 -2.39 -0.02 2.46 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.12 1.69 6.91 -2.39 -0.02 1.67 16 Total: -1.00 -67.31 340.14 4.73 -62.58 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.42 Total: 18.94 kcal Atomic # 6 Polarization: 55.59 SS G_CDS: 6.79 Total: 62.39 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -6.23 Total: -113.53 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.26 Total: -50.66 kcal Atomic # 9 Polarization: -24.11 SS G_CDS: 2.22 Total: -21.88 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.79 Total: 42.16 kcal Total: -67.31 4.73 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932923214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.994 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds