Wall clock time and date at job start Sat Apr 11 2020 05:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.91930 * 2 1 4 4 C 1.55122 * 111.16509 * 236.07565 * 2 1 3 5 5 N 1.47431 * 104.94565 * 205.13495 * 4 2 1 6 6 C 1.34770 * 125.65153 * 203.96959 * 5 4 2 7 7 O 1.21558 * 119.99638 * 0.02562 * 6 5 4 8 8 C 1.47866 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.34554 * 126.04554 * 359.69031 * 8 6 5 10 10 C 1.30864 * 107.26749 * 179.89593 * 9 8 6 11 11 N 1.34586 * 107.62768 * 0.36036 * 10 9 8 12 12 H 0.97001 * 125.75159 * 179.73597 * 11 10 9 13 13 N 1.28847 * 108.50134 * 359.77188 * 11 10 9 14 14 C 1.47022 * 108.70259 * 23.99987 * 5 4 2 15 15 C 1.54331 * 107.26969 * 358.94339 * 14 5 4 16 16 H 1.09000 * 110.72145 * 96.35237 * 15 14 5 17 17 N 1.46504 * 110.71829 * 219.44578 * 15 14 5 18 18 C 1.34775 * 119.99561 * 271.15516 * 17 15 14 19 19 O 1.21282 * 120.00577 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99768 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47349 * 180.02562 * 20 18 17 22 22 C 1.76199 * 100.00182 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99976 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99949 * 179.97438 * 22 21 20 25 25 N 1.31630 * 119.99849 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46819 * 59.99977 * 26 24 22 28 28 H 1.48494 * 109.47285 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47086 * 300.00273 * 26 24 22 30 30 H 1.09000 * 109.47351 * 296.09713 * 1 2 3 31 31 H 1.08998 * 109.46819 * 56.09737 * 1 2 3 32 32 H 1.08998 * 109.47249 * 176.09078 * 1 2 3 33 33 H 1.08994 * 110.42363 * 86.20221 * 4 2 1 34 34 H 1.09007 * 110.29983 * 323.99992 * 4 2 1 35 35 H 1.08007 * 126.18964 * 180.13128 * 10 9 8 36 36 H 1.09002 * 109.88474 * 239.53164 * 14 5 4 37 37 H 1.08994 * 109.88303 * 118.35839 * 14 5 4 38 38 H 0.96993 * 120.00065 * 91.15774 * 17 15 14 39 39 H 1.09005 * 109.46867 * 60.00428 * 20 18 17 40 40 H 1.09000 * 109.47235 * 300.00468 * 20 18 17 41 41 H 0.97005 * 119.99878 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0901 -0.8073 -1.2003 5 7 3.4299 -1.2474 -0.7705 6 6 4.4512 -1.5689 -1.5890 7 8 4.3067 -1.5068 -2.7944 8 6 5.7475 -1.9971 -1.0209 9 7 6.0421 -2.1031 0.2877 10 6 7.2822 -2.5118 0.3748 11 7 7.7547 -2.6502 -0.8777 12 1 8.6497 -2.9373 -1.1174 13 7 6.8180 -2.3364 -1.7050 14 6 3.4672 -1.2782 0.6989 15 6 2.0861 -0.8080 1.2022 16 1 1.4450 -1.6615 1.4229 17 7 2.2286 0.0495 2.3815 18 6 2.2497 -0.4970 3.6133 19 8 2.1512 -1.6985 3.7455 20 6 2.3969 0.3850 4.8264 21 16 2.3912 -0.6374 6.3200 22 6 2.5711 0.6135 7.5478 23 1 2.6457 1.6505 7.2553 24 6 2.6160 0.2663 8.8909 25 7 2.5246 -0.9976 9.2474 26 14 2.8075 1.5923 10.1926 27 1 1.6676 2.5402 10.1049 28 1 2.8270 0.9656 11.5386 29 1 4.0793 2.3256 9.9689 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0252 -0.0701 33 1 2.1643 -0.1732 -2.0837 34 1 1.4553 -1.6695 -1.4054 35 1 7.8290 -2.7001 1.2870 36 1 4.2434 -0.6057 1.0642 37 1 3.6612 -2.2938 1.0436 38 1 2.3077 1.0104 2.2757 39 1 1.5669 1.0905 4.8655 40 1 3.3371 0.9331 4.7652 41 1 2.5563 -1.2403 10.1860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072522276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:39 Heat of formation + Delta-G solvation = 26.334302 kcal Electronic energy + Delta-G solvation = -26404.498673 eV Core-core repulsion = 22447.943356 eV Total energy + Delta-G solvation = -3956.555317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.78973 -40.44921 -39.10570 -37.61256 -34.35194 -33.77383 -32.64516 -32.43467 -31.68532 -29.95914 -27.91988 -27.36118 -25.49035 -24.49192 -23.25253 -22.78535 -20.88247 -20.30430 -19.92141 -18.96728 -17.83220 -17.31174 -16.83348 -16.59344 -16.29051 -16.13416 -15.30175 -15.02543 -14.86919 -14.81196 -14.39341 -13.91505 -13.72797 -13.52745 -13.17022 -12.96910 -12.80586 -12.57589 -12.46310 -12.20138 -12.05021 -11.45787 -11.43196 -11.07732 -11.05292 -11.04752 -10.92246 -10.77344 -10.73491 -10.51908 -10.08912 -9.83166 -9.43194 -9.07550 -8.99254 -8.84916 -8.24690 -6.50494 -6.22451 -3.92833 1.05216 1.78811 2.09889 2.65365 3.01253 3.05451 3.09588 3.22597 3.26724 3.29752 3.61730 3.78415 4.08482 4.19807 4.29386 4.39420 4.49890 4.61180 4.93695 5.09945 5.12698 5.18275 5.22199 5.31980 5.51015 5.56863 5.59216 5.62266 5.72704 5.82655 5.86133 5.88852 5.92983 5.97801 6.11390 6.13869 6.35233 6.58410 7.11198 7.55353 7.58467 7.66523 7.88591 8.34159 8.58170 9.22890 10.84840 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002589 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.103327 B =10811.615108 C =12404.089737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 H 0.092 0.908 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.631 3.369 7 O -0.522 6.522 8 C 0.148 3.852 9 N -0.475 5.475 10 C 0.202 3.798 11 N -0.401 5.401 12 H 0.453 0.547 13 N -0.251 5.251 14 C 0.099 3.901 15 C 0.139 3.861 16 H 0.107 0.893 17 N -0.728 5.728 18 C 0.535 3.465 19 O -0.513 6.513 20 C -0.153 4.153 21 S -0.058 6.058 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.233 0.767 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 0.937 -20.908 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.110 0.890 4 C -0.007 4.007 5 N -0.333 5.333 6 C 0.416 3.584 7 O -0.395 6.395 8 C -0.132 4.132 9 N -0.201 5.201 10 C -0.096 4.096 11 N -0.124 5.124 12 H 0.299 0.701 13 N -0.091 5.091 14 C -0.025 4.025 15 C 0.033 3.967 16 H 0.125 0.875 17 N -0.382 5.382 18 C 0.321 3.679 19 O -0.386 6.386 20 C -0.304 4.304 21 S 0.168 5.832 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.200 1.200 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.389 -1.078 -21.626 22.313 hybrid contribution 1.286 2.403 0.902 2.871 sum 6.676 1.325 -20.724 21.813 Atomic orbital electron populations 1.21700 0.92708 1.02782 1.02670 1.22708 0.97148 0.99667 0.93592 0.89006 1.22401 0.81925 0.98732 0.97658 1.47993 1.11772 1.65704 1.07848 1.15784 0.80255 0.77657 0.84738 1.90837 1.81916 1.53433 1.13325 1.23624 0.95680 1.06738 0.87163 1.71521 1.12519 1.18388 1.17683 1.26782 0.91992 0.99656 0.91177 1.45297 1.14148 1.47737 1.05215 0.70062 1.74335 0.97739 1.16401 1.20615 1.22647 0.98159 1.03860 0.77849 1.21986 0.95427 0.94638 0.84687 0.87492 1.45926 1.77057 1.10215 1.04978 1.20337 0.74978 0.89021 0.83574 1.90713 1.47065 1.15034 1.85793 1.23533 1.04859 1.03231 0.98793 1.85392 1.95779 1.10047 0.91948 1.22831 1.58300 0.94405 0.92913 0.90994 1.24983 0.94592 0.96120 0.97839 1.70007 1.46659 1.15956 1.17675 0.86238 0.78846 0.80811 0.79684 1.19951 1.20834 1.19951 0.91445 0.91970 0.91898 0.89617 0.90420 0.75124 0.89788 0.89617 0.76565 0.89202 0.89178 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.32 37.16 0.35 -0.64 16 2 C -0.11 -0.90 3.27 -88.36 -0.29 -1.19 16 3 H 0.09 0.66 8.00 -51.93 -0.42 0.24 16 4 C 0.12 1.06 6.39 -2.41 -0.02 1.05 16 5 N -0.60 -7.06 3.33 -171.48 -0.57 -7.63 16 6 C 0.63 8.83 7.86 -12.32 -0.10 8.73 16 7 O -0.52 -8.55 17.34 5.31 0.09 -8.46 16 8 C 0.15 1.92 7.80 -156.35 -1.22 0.70 16 9 N -0.48 -5.46 8.87 -12.36 -0.11 -5.56 16 10 C 0.20 1.43 13.14 -90.49 -1.19 0.24 16 11 N -0.40 -2.66 6.93 29.57 0.20 -2.45 16 12 H 0.45 0.92 8.96 -190.21 -1.71 -0.78 16 13 N -0.25 -2.91 12.30 32.07 0.39 -2.51 16 14 C 0.10 1.18 5.28 -3.06 -0.02 1.16 16 15 C 0.14 1.53 2.74 -66.09 -0.18 1.35 16 16 H 0.11 1.35 7.52 -51.93 -0.39 0.96 16 17 N -0.73 -8.77 5.12 -52.02 -0.27 -9.03 16 18 C 0.53 9.24 7.85 -10.98 -0.09 9.15 16 19 O -0.51 -10.91 15.55 5.56 0.09 -10.82 16 20 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 21 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 22 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 23 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 24 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 26 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.09 0.77 8.04 -51.93 -0.42 0.35 16 34 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 35 H 0.23 0.57 8.06 -52.48 -0.42 0.15 16 36 H 0.08 1.06 7.51 -51.93 -0.39 0.67 16 37 H 0.09 1.18 7.75 -51.93 -0.40 0.78 16 38 H 0.40 3.70 8.54 -40.82 -0.35 3.35 16 39 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 40 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -38.96 368.02 -10.01 -48.98 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.56 Total: -0.50 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.33 Total: 5.20 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.39 Total: -52.19 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.96 -10.01 -48.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072522276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.311 kcal (2) G-P(sol) polarization free energy of solvation -38.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds