Wall clock time and date at job start Sat Apr 11 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.91930 * 2 1 4 4 C 1.55122 * 111.16509 * 236.07565 * 2 1 3 5 5 N 1.47431 * 104.94565 * 205.13495 * 4 2 1 6 6 C 1.34770 * 125.65153 * 203.96959 * 5 4 2 7 7 O 1.21558 * 119.99638 * 0.02562 * 6 5 4 8 8 C 1.47866 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.34554 * 126.04554 * 359.69031 * 8 6 5 10 10 C 1.30864 * 107.26749 * 179.89593 * 9 8 6 11 11 N 1.34586 * 107.62768 * 0.36036 * 10 9 8 12 12 H 0.97001 * 125.75159 * 179.73597 * 11 10 9 13 13 N 1.28847 * 108.50134 * 359.77188 * 11 10 9 14 14 C 1.47022 * 108.70259 * 23.99987 * 5 4 2 15 15 C 1.54331 * 107.26969 * 358.94339 * 14 5 4 16 16 H 1.09000 * 110.72145 * 96.35237 * 15 14 5 17 17 N 1.46504 * 110.71829 * 219.44578 * 15 14 5 18 18 C 1.34775 * 119.99561 * 271.15516 * 17 15 14 19 19 O 1.21282 * 120.00577 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99768 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47349 * 180.02562 * 20 18 17 22 22 C 1.76199 * 100.00182 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99976 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99949 * 179.97438 * 22 21 20 25 25 N 1.31630 * 119.99849 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46819 * 59.99977 * 26 24 22 28 28 H 1.48494 * 109.47285 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47086 * 300.00273 * 26 24 22 30 30 H 1.09000 * 109.47351 * 296.09713 * 1 2 3 31 31 H 1.08998 * 109.46819 * 56.09737 * 1 2 3 32 32 H 1.08998 * 109.47249 * 176.09078 * 1 2 3 33 33 H 1.08994 * 110.42363 * 86.20221 * 4 2 1 34 34 H 1.09007 * 110.29983 * 323.99992 * 4 2 1 35 35 H 1.08007 * 126.18964 * 180.13128 * 10 9 8 36 36 H 1.09002 * 109.88474 * 239.53164 * 14 5 4 37 37 H 1.08994 * 109.88303 * 118.35839 * 14 5 4 38 38 H 0.96993 * 120.00065 * 91.15774 * 17 15 14 39 39 H 1.09005 * 109.46867 * 60.00428 * 20 18 17 40 40 H 1.09000 * 109.47235 * 300.00468 * 20 18 17 41 41 H 0.97005 * 119.99878 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0901 -0.8073 -1.2003 5 7 3.4299 -1.2474 -0.7705 6 6 4.4512 -1.5689 -1.5890 7 8 4.3067 -1.5068 -2.7944 8 6 5.7475 -1.9971 -1.0209 9 7 6.0421 -2.1031 0.2877 10 6 7.2822 -2.5118 0.3748 11 7 7.7547 -2.6502 -0.8777 12 1 8.6497 -2.9373 -1.1174 13 7 6.8180 -2.3364 -1.7050 14 6 3.4672 -1.2782 0.6989 15 6 2.0861 -0.8080 1.2022 16 1 1.4450 -1.6615 1.4229 17 7 2.2286 0.0495 2.3815 18 6 2.2497 -0.4970 3.6133 19 8 2.1512 -1.6985 3.7455 20 6 2.3969 0.3850 4.8264 21 16 2.3912 -0.6374 6.3200 22 6 2.5711 0.6135 7.5478 23 1 2.6457 1.6505 7.2553 24 6 2.6160 0.2663 8.8909 25 7 2.5246 -0.9976 9.2474 26 14 2.8075 1.5923 10.1926 27 1 1.6676 2.5402 10.1049 28 1 2.8270 0.9656 11.5386 29 1 4.0793 2.3256 9.9689 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0252 -0.0701 33 1 2.1643 -0.1732 -2.0837 34 1 1.4553 -1.6695 -1.4054 35 1 7.8290 -2.7001 1.2870 36 1 4.2434 -0.6057 1.0642 37 1 3.6612 -2.2938 1.0436 38 1 2.3077 1.0104 2.2757 39 1 1.5669 1.0905 4.8655 40 1 3.3371 0.9331 4.7652 41 1 2.5563 -1.2403 10.1860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072522276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:38 Heat of formation + Delta-G solvation = -2.651097 kcal Electronic energy + Delta-G solvation = -26405.755574 eV Core-core repulsion = 22447.943356 eV Total energy + Delta-G solvation = -3957.812218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.51801 -41.46141 -40.35786 -38.71113 -35.40732 -34.66570 -34.53657 -33.50655 -32.43691 -31.27747 -29.10497 -28.13847 -27.59563 -25.33129 -23.94659 -23.74049 -21.80818 -21.45792 -20.81323 -19.75172 -19.69417 -18.23818 -17.86775 -17.58732 -17.38626 -17.20836 -16.83621 -16.37440 -16.23290 -15.79931 -15.74083 -15.13351 -14.75543 -14.63785 -14.44837 -14.23808 -13.92801 -13.59234 -13.43190 -13.20786 -13.12376 -13.01012 -12.83811 -12.60638 -12.32136 -12.16066 -11.83732 -11.74627 -11.67567 -11.54930 -11.53470 -11.08957 -10.89684 -10.85951 -10.21458 -10.13844 -9.83688 -8.60353 -8.30484 -6.07249 0.19777 1.08385 1.27436 1.36150 1.46404 1.50711 1.60141 1.66355 2.01255 2.13343 2.29620 2.34644 2.91375 3.03637 3.29136 3.38751 3.50134 3.53021 3.87146 3.97768 4.01982 4.16507 4.27792 4.38376 4.50610 4.58855 4.60415 4.80006 4.80896 4.83530 4.88296 5.02453 5.09032 5.17207 5.22336 5.41140 5.46146 5.51336 5.89120 6.13801 6.23848 6.54014 6.70893 7.01645 7.11169 7.29359 8.78216 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002589 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.103327 B =10811.615108 C =12404.089737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.111 0.889 4 C 0.109 3.891 5 N -0.595 5.595 6 C 0.625 3.375 7 O -0.556 6.556 8 C 0.122 3.878 9 N -0.509 5.509 10 C 0.218 3.782 11 N -0.379 5.379 12 H 0.472 0.528 13 N -0.274 5.274 14 C 0.111 3.889 15 C 0.139 3.861 16 H 0.092 0.908 17 N -0.700 5.700 18 C 0.540 3.460 19 O -0.558 6.558 20 C -0.130 4.130 21 S -0.147 6.147 22 C -0.546 4.546 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.995 3.005 27 H -0.263 1.263 28 H -0.281 1.281 29 H -0.262 1.262 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.278 0.722 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 3.180 -21.147 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.129 0.871 4 C -0.012 4.012 5 N -0.327 5.327 6 C 0.410 3.590 7 O -0.433 6.433 8 C -0.158 4.158 9 N -0.236 5.236 10 C -0.079 4.079 11 N -0.105 5.105 12 H 0.324 0.676 13 N -0.116 5.116 14 C -0.013 4.013 15 C 0.033 3.967 16 H 0.110 0.890 17 N -0.354 5.354 18 C 0.326 3.674 19 O -0.435 6.435 20 C -0.281 4.281 21 S 0.080 5.920 22 C -0.694 4.694 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.548 5.548 26 Si 0.817 3.183 27 H -0.188 1.188 28 H -0.206 1.206 29 H -0.187 1.187 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.293 0.707 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.256 0.744 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.999 1.205 -21.901 22.739 hybrid contribution 1.180 1.663 0.871 2.217 sum 7.179 2.868 -21.030 22.406 Atomic orbital electron populations 1.21705 0.91496 1.03033 1.03398 1.22664 0.97901 0.99759 0.90849 0.87114 1.22619 0.80826 0.99346 0.98411 1.48033 1.12277 1.64865 1.07573 1.16063 0.81048 0.77362 0.84538 1.90797 1.82710 1.55212 1.14551 1.23498 0.95781 1.08519 0.87969 1.71475 1.14847 1.20104 1.17204 1.27599 0.90882 0.97089 0.92323 1.45266 1.14272 1.46262 1.04708 0.67636 1.74236 0.98361 1.16900 1.22067 1.22421 0.98376 1.02514 0.77987 1.22020 0.94939 0.94744 0.84999 0.88984 1.45592 1.74929 1.11290 1.03575 1.20038 0.74824 0.88030 0.84526 1.90710 1.49543 1.16811 1.86484 1.23373 1.06774 1.02295 0.95661 1.85567 1.96100 1.13790 0.96566 1.23183 1.57968 0.94768 0.93466 0.89926 1.26083 0.93977 0.98569 1.00431 1.70175 1.47970 1.18431 1.18184 0.85048 0.79438 0.77588 0.76204 1.18758 1.20586 1.18666 0.91693 0.90013 0.92192 0.88911 0.89820 0.70673 0.90170 0.91796 0.74357 0.87078 0.87198 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.32 71.98 0.67 -0.94 16 2 C -0.09 -1.28 3.27 -9.33 -0.03 -1.31 16 3 H 0.11 1.19 8.00 -2.39 -0.02 1.17 16 4 C 0.11 1.89 6.39 86.93 0.56 2.45 16 5 N -0.59 -13.93 3.33 -814.72 -2.71 -16.64 16 6 C 0.62 17.82 7.86 86.79 0.68 18.50 16 7 O -0.56 -18.70 17.34 -3.90 -0.07 -18.76 16 8 C 0.12 3.18 7.80 137.13 1.07 4.25 16 9 N -0.51 -11.47 8.87 -193.03 -1.71 -13.18 16 10 C 0.22 2.69 13.14 180.30 2.37 5.06 16 11 N -0.38 -4.46 6.93 -60.37 -0.42 -4.88 16 12 H 0.47 0.97 8.96 -219.80 -1.97 -1.00 16 13 N -0.27 -6.27 12.30 -52.44 -0.65 -6.92 16 14 C 0.11 2.63 5.28 86.73 0.46 3.09 16 15 C 0.14 2.92 2.74 46.18 0.13 3.04 16 16 H 0.09 2.30 7.52 -2.39 -0.02 2.29 16 17 N -0.70 -15.56 5.12 -436.90 -2.24 -17.79 16 18 C 0.54 18.21 7.85 87.66 0.69 18.90 16 19 O -0.56 -24.15 15.55 -3.04 -0.05 -24.20 16 20 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 21 S -0.15 -7.88 20.57 -56.49 -1.16 -9.04 16 22 C -0.55 -30.28 9.50 67.96 0.65 -29.64 16 23 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 24 C 0.01 0.79 5.49 84.86 0.47 1.26 16 25 N -0.91 -54.95 13.22 21.65 0.29 -54.66 16 26 Si 1.00 42.57 29.55 68.60 2.03 44.60 16 27 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 28 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 29 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.09 1.53 8.04 -2.39 -0.02 1.52 16 34 H 0.08 1.36 7.99 -2.38 -0.02 1.35 16 35 H 0.28 0.43 8.06 -2.91 -0.02 0.41 16 36 H 0.08 1.98 7.51 -2.39 -0.02 1.96 16 37 H 0.06 1.82 7.75 -2.39 -0.02 1.80 16 38 H 0.42 6.41 8.54 -92.71 -0.79 5.62 16 39 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 40 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 41 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -88.69 368.02 -0.21 -88.91 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -1.67 Total: 12.23 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 8.14 Total: 20.33 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -7.43 Total: -114.07 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.11 Total: -42.96 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -88.69 -0.21 -88.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072522276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.255 kcal (2) G-P(sol) polarization free energy of solvation -88.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds