Wall clock time and date at job start Sat Apr 11 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48497 * 109.47259 * 270.00396 * 3 2 1 5 5 H 1.48502 * 109.47283 * 30.00378 * 3 2 1 6 6 H 1.48504 * 109.47349 * 149.99940 * 3 2 1 7 7 C 1.38809 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 195.46445 * 7 2 1 9 9 N 1.36938 * 119.99932 * 15.46638 * 7 2 1 10 10 C 1.47503 * 118.75695 * 26.09277 * 9 7 2 11 11 C 1.53575 * 111.02237 * 138.37462 * 10 9 7 12 12 C 1.51536 * 109.58350 * 320.02138 * 11 10 9 13 13 O 1.42150 * 108.76073 * 91.39997 * 12 11 10 14 14 C 1.38007 * 119.44143 * 272.77751 * 13 12 11 15 15 H 1.09005 * 109.47055 * 303.43075 * 14 13 12 16 16 C 1.52996 * 109.47373 * 183.42865 * 14 13 12 17 17 N 1.46493 * 109.47202 * 64.99987 * 16 14 13 18 18 C 1.34775 * 120.00306 * 179.97438 * 17 16 14 19 19 O 1.21575 * 120.00154 * 0.02562 * 18 17 16 20 20 C 1.47623 * 120.00041 * 179.97438 * 18 17 16 21 21 N 1.33052 * 120.53001 * 0.02562 * 20 18 17 22 22 N 1.28717 * 120.36574 * 179.72246 * 21 20 18 23 23 C 1.32941 * 121.55619 * 0.02562 * 22 21 20 24 24 O 1.35288 * 119.46937 * 179.97438 * 23 22 21 25 25 N 1.32466 * 121.05841 * 359.97438 * 23 22 21 26 26 C 1.32864 * 119.51952 * 0.02562 * 25 23 22 27 27 O 1.35283 * 120.72358 * 180.02562 * 26 25 23 28 28 C 1.45118 * 118.75657 * 206.09763 * 9 7 2 29 29 H 0.97003 * 120.00119 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.16818 * 17.97975 * 10 9 7 31 31 H 1.08995 * 109.12802 * 258.74643 * 10 9 7 32 32 H 1.09008 * 109.45286 * 199.98984 * 11 10 9 33 33 H 1.08994 * 109.45196 * 80.06053 * 11 10 9 34 34 H 1.08994 * 109.58890 * 331.61818 * 12 11 10 35 35 H 1.08998 * 109.59052 * 211.18236 * 12 11 10 36 36 H 1.09000 * 109.47173 * 304.99944 * 16 14 13 37 37 H 1.08999 * 109.47296 * 185.00119 * 16 14 13 38 38 H 0.97007 * 120.00156 * 0.02562 * 17 16 14 39 39 H 0.96701 * 114.00391 * 89.99726 * 24 23 22 40 40 H 0.96696 * 113.99687 * 269.97644 * 27 26 25 41 41 H 1.09000 * 109.46504 * 149.26692 * 28 9 7 42 42 H 1.09003 * 109.46233 * 29.30746 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0609 -1.2192 0.2488 9 7 1.3627 -2.3664 -0.3173 10 6 0.1710 -2.3025 -1.1842 11 6 0.1767 -3.4422 -2.2135 12 6 1.5842 -3.6476 -2.7360 13 8 2.2338 -4.6213 -1.9293 14 6 2.8926 -4.2230 -0.7839 15 1 3.6427 -3.4740 -1.0380 16 6 3.5762 -5.4321 -0.1422 17 7 4.6225 -5.9332 -1.0367 18 6 5.3625 -7.0006 -0.6768 19 8 5.1615 -7.5478 0.3900 20 6 6.4165 -7.5059 -1.5785 21 7 6.6451 -6.9155 -2.7487 22 7 7.5685 -7.3554 -3.5302 23 6 8.3177 -8.4031 -3.2010 24 8 9.2763 -8.8304 -4.0547 25 7 8.1407 -9.0354 -2.0505 26 6 7.1992 -8.6169 -1.2116 27 8 6.9978 -9.2442 -0.0300 28 6 1.8749 -3.6165 0.2126 29 1 -0.4850 0.8401 0.0004 30 1 0.1606 -1.3468 -1.7084 31 1 -0.7240 -2.3818 -0.5673 32 1 -0.4843 -3.1866 -3.0418 33 1 -0.1727 -4.3600 -1.7408 34 1 2.1331 -2.7073 -2.6870 35 1 1.5437 -3.9962 -3.7680 36 1 2.8395 -6.2166 0.0307 37 1 4.0214 -5.1360 0.8076 38 1 4.7832 -5.4964 -1.8879 39 1 10.1390 -8.4157 -3.9169 40 1 6.3554 -9.9657 -0.0723 41 1 1.0502 -4.3140 0.3589 42 1 2.3675 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073679310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:43 Heat of formation + Delta-G solvation = -39.852308 kcal Electronic energy + Delta-G solvation = -29516.054336 eV Core-core repulsion = 25113.876082 eV Total energy + Delta-G solvation = -4402.178255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57584 -39.93891 -39.01782 -38.50307 -38.17339 -35.34591 -34.90192 -34.70583 -32.70900 -31.90241 -31.49010 -28.69955 -26.74864 -25.85129 -25.48556 -24.98901 -22.91514 -21.40575 -20.85614 -20.52653 -19.98770 -19.57104 -19.00836 -18.30221 -17.01764 -16.87165 -16.32495 -16.16231 -15.98156 -15.34012 -15.16174 -14.99382 -14.50731 -14.32022 -13.76853 -13.72693 -13.51005 -13.15050 -13.04869 -12.86607 -12.79418 -12.34756 -12.15356 -12.12719 -11.99349 -11.44054 -11.23374 -11.02206 -10.92200 -10.68464 -10.52919 -10.37806 -10.23787 -9.95397 -9.89422 -9.78457 -9.73175 -9.14077 -8.85050 -8.46600 -6.79816 -5.87198 -3.32427 -0.51049 -0.21736 1.95238 2.13533 2.48191 2.69851 2.94732 3.27500 3.32197 3.39801 3.40414 3.91680 4.09697 4.15725 4.41063 4.45190 4.88518 5.12539 5.31612 5.47641 5.54664 5.66869 5.80949 5.89325 5.91818 5.95721 6.12035 6.19508 6.31089 6.35702 6.50910 6.56090 6.68601 6.69118 6.71655 6.78255 7.26792 7.32428 7.60420 7.62069 7.73869 7.89557 8.17411 8.35850 9.13675 9.78281 10.24024 11.20272 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.002452 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.099143 B =11414.374375 C =11615.875156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.176 4.176 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.065 3.935 15 H 0.054 0.946 16 C 0.130 3.870 17 N -0.692 5.692 18 C 0.575 3.425 19 O -0.514 6.514 20 C -0.048 4.048 21 N -0.110 5.110 22 N -0.281 5.281 23 C 0.479 3.521 24 O -0.447 6.447 25 N -0.510 5.510 26 C 0.421 3.579 27 O -0.441 6.441 28 C 0.129 3.871 29 H 0.255 0.745 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.414 0.586 39 H 0.422 0.578 40 H 0.423 0.577 41 H 0.044 0.956 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.856 -16.455 -5.939 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.315 6.315 14 C 0.003 3.997 15 H 0.072 0.928 16 C 0.007 3.993 17 N -0.342 5.342 18 C 0.356 3.644 19 O -0.388 6.388 20 C -0.201 4.201 21 N 0.032 4.968 22 N -0.143 5.143 23 C 0.174 3.826 24 O -0.249 6.249 25 N -0.253 5.253 26 C 0.223 3.777 27 O -0.248 6.248 28 C -0.001 4.001 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.250 0.750 39 H 0.285 0.715 40 H 0.287 0.713 41 H 0.063 0.937 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.775 -16.471 -6.107 21.721 hybrid contribution 0.580 0.849 0.347 1.085 sum 13.355 -15.623 -5.760 21.345 Atomic orbital electron populations 1.70068 1.05255 1.25612 1.53634 1.25046 0.95295 0.98443 1.00384 0.86294 0.79143 0.83604 0.77736 1.21369 1.21703 1.20377 1.19228 0.92412 0.84849 1.43113 0.91517 1.43835 1.31467 1.01534 1.54383 1.21008 0.88418 0.95504 0.89915 1.22773 0.97098 1.01282 1.00408 1.22021 0.92712 0.92220 0.91819 1.86064 1.70698 1.38029 1.36718 1.22658 0.95050 0.93684 0.88351 0.92786 1.21606 0.88541 0.96497 0.92629 1.45886 1.34921 1.29949 1.23489 1.17010 0.80777 0.81618 0.84996 1.90871 1.68228 1.57978 1.21772 1.24171 1.00344 0.99226 0.96383 1.74031 1.05658 1.18488 0.98669 1.73892 1.04599 1.10170 1.25634 1.21898 0.90836 0.85608 0.84211 1.84696 1.22063 1.66299 1.51891 1.68193 1.20798 1.33012 1.03335 1.19907 0.85330 0.88431 0.83999 1.84678 1.65783 1.52383 1.22003 1.21399 0.95082 0.89026 0.94576 0.93532 0.90608 0.95435 0.92087 0.92384 0.91963 0.91132 0.90278 0.89523 0.74977 0.71542 0.71290 0.93730 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 10.99 55.49 0.61 -24.61 16 2 C 0.01 0.20 4.89 -17.43 -0.09 0.11 16 3 Si 0.90 20.99 29.58 -169.99 -5.03 15.96 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.27 -6.89 9.46 -15.06 -0.14 -7.04 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -13.85 2.23 -172.02 -0.38 -14.23 16 10 C 0.18 4.02 4.70 -3.19 -0.02 4.00 16 11 C -0.18 -3.20 5.78 -27.17 -0.16 -3.36 16 12 C 0.09 1.50 6.37 36.42 0.23 1.74 16 13 O -0.40 -6.67 9.38 -26.51 -0.25 -6.92 16 14 C 0.06 1.07 2.68 -25.78 -0.07 1.00 16 15 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 16 C 0.13 1.81 5.34 -4.05 -0.02 1.79 16 17 N -0.69 -8.83 5.48 -61.33 -0.34 -9.16 16 18 C 0.58 7.32 7.80 -12.43 -0.10 7.22 16 19 O -0.51 -7.46 15.27 -16.07 -0.25 -7.70 16 20 C -0.05 -0.54 6.85 -82.55 -0.57 -1.11 16 21 N -0.11 -1.27 10.88 33.45 0.36 -0.90 16 22 N -0.28 -3.09 11.60 29.21 0.34 -2.75 16 23 C 0.48 4.59 8.81 -90.58 -0.80 3.79 16 24 O -0.45 -3.05 13.63 -17.56 -0.24 -3.29 16 25 N -0.51 -5.16 10.57 -14.33 -0.15 -5.31 16 26 C 0.42 4.30 7.85 -16.15 -0.13 4.17 16 27 O -0.44 -3.97 11.76 -38.91 -0.46 -4.42 16 28 C 0.13 2.51 5.12 -3.83 -0.02 2.49 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.08 1.92 6.37 -51.93 -0.33 1.59 16 31 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 32 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 34 H 0.06 1.19 7.40 -51.93 -0.38 0.80 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.41 5.08 7.82 -40.82 -0.32 4.76 16 39 H 0.42 0.51 9.06 45.56 0.41 0.92 16 40 H 0.42 1.81 9.06 45.56 0.41 2.22 16 41 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 42 H 0.06 1.10 7.98 -51.93 -0.41 0.68 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -32.71 357.11 -5.80 -38.51 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.54 Total: 4.64 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: -1.86 Total: 14.81 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.44 Total: -56.97 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.19 Total: -22.34 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.71 -5.80 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073679310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.344 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds