Wall clock time and date at job start Sat Apr 11 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48497 * 109.47259 * 270.00396 * 3 2 1 5 5 H 1.48502 * 109.47283 * 30.00378 * 3 2 1 6 6 H 1.48504 * 109.47349 * 149.99940 * 3 2 1 7 7 C 1.38809 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 195.46445 * 7 2 1 9 9 N 1.36938 * 119.99932 * 15.46638 * 7 2 1 10 10 C 1.47503 * 118.75695 * 26.09277 * 9 7 2 11 11 C 1.53575 * 111.02237 * 138.37462 * 10 9 7 12 12 C 1.51536 * 109.58350 * 320.02138 * 11 10 9 13 13 O 1.42150 * 108.76073 * 91.39997 * 12 11 10 14 14 C 1.38007 * 119.44143 * 272.77751 * 13 12 11 15 15 H 1.09005 * 109.47055 * 303.43075 * 14 13 12 16 16 C 1.52996 * 109.47373 * 183.42865 * 14 13 12 17 17 N 1.46493 * 109.47202 * 64.99987 * 16 14 13 18 18 C 1.34775 * 120.00306 * 179.97438 * 17 16 14 19 19 O 1.21575 * 120.00154 * 0.02562 * 18 17 16 20 20 C 1.47623 * 120.00041 * 179.97438 * 18 17 16 21 21 N 1.33052 * 120.53001 * 0.02562 * 20 18 17 22 22 N 1.28717 * 120.36574 * 179.72246 * 21 20 18 23 23 C 1.32941 * 121.55619 * 0.02562 * 22 21 20 24 24 O 1.35288 * 119.46937 * 179.97438 * 23 22 21 25 25 N 1.32466 * 121.05841 * 359.97438 * 23 22 21 26 26 C 1.32864 * 119.51952 * 0.02562 * 25 23 22 27 27 O 1.35283 * 120.72358 * 180.02562 * 26 25 23 28 28 C 1.45118 * 118.75657 * 206.09763 * 9 7 2 29 29 H 0.97003 * 120.00119 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.16818 * 17.97975 * 10 9 7 31 31 H 1.08995 * 109.12802 * 258.74643 * 10 9 7 32 32 H 1.09008 * 109.45286 * 199.98984 * 11 10 9 33 33 H 1.08994 * 109.45196 * 80.06053 * 11 10 9 34 34 H 1.08994 * 109.58890 * 331.61818 * 12 11 10 35 35 H 1.08998 * 109.59052 * 211.18236 * 12 11 10 36 36 H 1.09000 * 109.47173 * 304.99944 * 16 14 13 37 37 H 1.08999 * 109.47296 * 185.00119 * 16 14 13 38 38 H 0.97007 * 120.00156 * 0.02562 * 17 16 14 39 39 H 0.96701 * 114.00391 * 89.99726 * 24 23 22 40 40 H 0.96696 * 113.99687 * 269.97644 * 27 26 25 41 41 H 1.09000 * 109.46504 * 149.26692 * 28 9 7 42 42 H 1.09003 * 109.46233 * 29.30746 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0609 -1.2192 0.2488 9 7 1.3627 -2.3664 -0.3173 10 6 0.1710 -2.3025 -1.1842 11 6 0.1767 -3.4422 -2.2135 12 6 1.5842 -3.6476 -2.7360 13 8 2.2338 -4.6213 -1.9293 14 6 2.8926 -4.2230 -0.7839 15 1 3.6427 -3.4740 -1.0380 16 6 3.5762 -5.4321 -0.1422 17 7 4.6225 -5.9332 -1.0367 18 6 5.3625 -7.0006 -0.6768 19 8 5.1615 -7.5478 0.3900 20 6 6.4165 -7.5059 -1.5785 21 7 6.6451 -6.9155 -2.7487 22 7 7.5685 -7.3554 -3.5302 23 6 8.3177 -8.4031 -3.2010 24 8 9.2763 -8.8304 -4.0547 25 7 8.1407 -9.0354 -2.0505 26 6 7.1992 -8.6169 -1.2116 27 8 6.9978 -9.2442 -0.0300 28 6 1.8749 -3.6165 0.2126 29 1 -0.4850 0.8401 0.0004 30 1 0.1606 -1.3468 -1.7084 31 1 -0.7240 -2.3818 -0.5673 32 1 -0.4843 -3.1866 -3.0418 33 1 -0.1727 -4.3600 -1.7408 34 1 2.1331 -2.7073 -2.6870 35 1 1.5437 -3.9962 -3.7680 36 1 2.8395 -6.2166 0.0307 37 1 4.0214 -5.1360 0.8076 38 1 4.7832 -5.4964 -1.8879 39 1 10.1390 -8.4157 -3.9169 40 1 6.3554 -9.9657 -0.0723 41 1 1.0502 -4.3140 0.3589 42 1 2.3675 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073679310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:42 Heat of formation + Delta-G solvation = -71.920850 kcal Electronic energy + Delta-G solvation = -29517.444933 eV Core-core repulsion = 25113.876082 eV Total energy + Delta-G solvation = -4403.568851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.35417 -41.00010 -40.26052 -39.33914 -38.83823 -36.98644 -36.00987 -35.58555 -33.83881 -33.45091 -32.96129 -30.14682 -27.79264 -27.17084 -26.94165 -26.11503 -24.40237 -22.40501 -22.27124 -21.32877 -21.19141 -20.73941 -19.68133 -19.30567 -18.82353 -17.71984 -17.49811 -17.26738 -16.96450 -16.84090 -16.47026 -16.11313 -16.03974 -15.49710 -15.12588 -15.00942 -14.67588 -14.29530 -14.21134 -13.94005 -13.73983 -13.61969 -13.60277 -13.10448 -12.99045 -12.87572 -12.77703 -12.73436 -12.47040 -12.39296 -12.05329 -11.74708 -11.46904 -11.37721 -11.30623 -11.28983 -10.71972 -10.51870 -10.25769 -10.18838 -8.71024 -7.88058 -5.35109 -1.26992 -0.99451 1.21990 1.33474 1.46683 1.48492 1.56370 1.70389 1.79554 2.08594 2.42093 2.50872 2.78582 3.23510 3.26796 3.31159 3.58823 3.68602 4.06618 4.16527 4.21650 4.24882 4.39028 4.55846 4.61937 4.69048 4.78143 4.85338 4.94289 5.16557 5.18725 5.20947 5.23518 5.29919 5.49598 5.63462 5.77547 6.18548 6.19877 6.27350 6.37453 6.76755 6.81912 6.91358 7.15939 7.88603 8.29176 9.17573 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.002452 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.099143 B =11414.374375 C =11615.875156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.069 0.931 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.163 4.163 12 C 0.091 3.909 13 O -0.392 6.392 14 C 0.082 3.918 15 H 0.045 0.955 16 C 0.141 3.859 17 N -0.690 5.690 18 C 0.582 3.418 19 O -0.533 6.533 20 C -0.057 4.057 21 N -0.115 5.115 22 N -0.297 5.297 23 C 0.491 3.509 24 O -0.446 6.446 25 N -0.516 5.516 26 C 0.432 3.568 27 O -0.447 6.447 28 C 0.124 3.876 29 H 0.249 0.751 30 H 0.045 0.955 31 H -0.006 1.006 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.417 0.583 39 H 0.446 0.554 40 H 0.442 0.558 41 H 0.047 0.953 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.616 -17.964 -6.897 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.791 3.209 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.397 4.397 8 H 0.087 0.913 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.202 4.202 12 C 0.015 3.985 13 O -0.311 6.311 14 C 0.020 3.980 15 H 0.062 0.938 16 C 0.017 3.983 17 N -0.341 5.341 18 C 0.363 3.637 19 O -0.409 6.409 20 C -0.210 4.210 21 N 0.026 4.974 22 N -0.160 5.160 23 C 0.186 3.814 24 O -0.253 6.253 25 N -0.260 5.260 26 C 0.234 3.766 27 O -0.258 6.258 28 C -0.004 4.004 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.012 0.988 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.254 0.746 39 H 0.313 0.687 40 H 0.309 0.691 41 H 0.065 0.935 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.587 -18.027 -7.078 24.246 hybrid contribution 0.093 1.214 0.646 1.379 sum 14.681 -16.812 -6.431 23.228 Atomic orbital electron populations 1.70225 1.06577 1.25740 1.55510 1.25744 0.95979 1.01341 1.01071 0.85338 0.78137 0.79844 0.77552 1.21161 1.22460 1.19359 1.19521 0.92616 0.85894 1.41685 0.91327 1.44041 1.31499 1.02234 1.55045 1.20777 0.87056 0.96036 0.90151 1.22619 0.98668 0.99279 0.99660 1.22060 0.91353 0.91579 0.93468 1.86096 1.70551 1.37854 1.36554 1.22354 0.93798 0.94512 0.87332 0.93758 1.21396 0.88859 0.95388 0.92608 1.45766 1.34721 1.30159 1.23438 1.17073 0.80676 0.81089 0.84827 1.90860 1.68862 1.58544 1.22649 1.23876 1.00701 1.00035 0.96429 1.73956 1.05895 1.18796 0.98739 1.73872 1.05101 1.11185 1.25822 1.21966 0.90719 0.84673 0.83996 1.84665 1.23047 1.66427 1.51153 1.68319 1.20900 1.33168 1.03612 1.19874 0.84784 0.87970 0.84005 1.84636 1.66514 1.53189 1.21500 1.21570 0.95806 0.87683 0.95368 0.94172 0.93694 0.98775 0.89878 0.91876 0.94213 0.87606 0.89980 0.89019 0.74583 0.68673 0.69051 0.93506 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.93 10.99 21.65 0.24 -53.69 16 2 C -0.05 -2.47 4.89 84.86 0.41 -2.06 16 3 Si 0.96 43.73 29.58 68.60 2.03 45.76 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.27 -13.96 9.46 84.03 0.80 -13.17 16 8 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 9 N -0.61 -28.76 2.23 -698.16 -1.55 -30.31 16 10 C 0.18 8.61 4.70 86.38 0.41 9.02 16 11 C -0.16 -5.74 5.78 30.31 0.18 -5.56 16 12 C 0.09 2.94 6.37 71.50 0.46 3.40 16 13 O -0.39 -12.43 9.38 -117.76 -1.10 -13.53 16 14 C 0.08 2.60 2.68 31.21 0.08 2.68 16 15 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 16 C 0.14 3.69 5.34 86.38 0.46 4.16 16 17 N -0.69 -16.49 5.48 -466.21 -2.56 -19.05 16 18 C 0.58 13.90 7.80 86.72 0.68 14.58 16 19 O -0.53 -14.66 15.27 16.48 0.25 -14.41 16 20 C -0.06 -1.19 6.85 42.06 0.29 -0.91 16 21 N -0.12 -2.48 10.88 -48.09 -0.52 -3.01 16 22 N -0.30 -6.04 11.60 -174.24 -2.02 -8.06 16 23 C 0.49 8.39 8.81 180.33 1.59 9.98 16 24 O -0.45 -5.00 13.63 -85.74 -1.17 -6.17 16 25 N -0.52 -9.40 10.57 -424.98 -4.49 -13.90 16 26 C 0.43 8.05 7.85 85.16 0.67 8.72 16 27 O -0.45 -7.25 11.76 -65.25 -0.77 -8.02 16 28 C 0.12 4.79 5.12 87.26 0.45 5.23 16 29 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.04 2.35 6.37 -2.38 -0.02 2.33 16 31 H -0.01 -0.31 8.04 -2.39 -0.02 -0.33 16 32 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.06 2.17 8.01 -2.39 -0.02 2.15 16 34 H 0.04 1.48 7.40 -2.39 -0.02 1.46 16 35 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.42 9.56 7.82 -92.70 -0.73 8.83 16 39 H 0.45 -0.12 9.06 -74.06 -0.67 -0.79 16 40 H 0.44 2.97 9.06 -74.06 -0.67 2.30 16 41 H 0.05 1.78 8.11 -2.39 -0.02 1.76 16 42 H 0.05 2.12 7.98 -2.39 -0.02 2.10 16 Total: -1.00 -70.45 357.11 -6.16 -76.61 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.95 Total: 11.70 kcal Atomic # 6 Polarization: 29.62 SS G_CDS: 6.46 Total: 36.08 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -10.91 Total: -128.02 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -2.79 Total: -42.13 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.45 -6.16 -76.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073679310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.691 kcal (2) G-P(sol) polarization free energy of solvation -70.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds