Wall clock time and date at job start Sat Apr 11 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47146 * 2 1 4 4 C 1.34783 * 120.00007 * 275.67001 * 3 2 1 5 5 O 1.21551 * 120.00089 * 184.71707 * 4 3 2 6 6 C 1.47877 * 119.99753 * 4.71991 * 4 3 2 7 7 N 1.34550 * 126.04280 * 175.18078 * 6 4 3 8 8 C 1.30870 * 107.26227 * 179.97438 * 7 6 4 9 9 N 1.34581 * 107.63168 * 359.97438 * 8 7 6 10 10 H 0.96994 * 125.75330 * 180.02562 * 9 8 7 11 11 N 1.28858 * 108.49979 * 359.72707 * 9 8 7 12 12 C 1.46502 * 119.99981 * 95.67577 * 3 2 1 13 13 C 1.53495 * 114.20242 * 232.59156 * 12 3 2 14 14 N 1.47072 * 87.98521 * 220.14801 * 13 12 3 15 15 C 1.34776 * 136.05818 * 207.08776 * 14 13 12 16 16 O 1.21281 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99813 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.46879 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99941 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99857 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00169 * 179.72507 * 19 18 17 22 22 N 1.31626 * 120.00038 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99585 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46821 * 90.00612 * 23 21 19 25 25 H 1.48508 * 109.46874 * 209.99969 * 23 21 19 26 26 H 1.48491 * 109.47732 * 330.00368 * 23 21 19 27 27 C 1.47065 * 87.88204 * 27.34195 * 14 13 12 28 28 H 1.09003 * 109.47302 * 59.99851 * 1 2 3 29 29 H 1.08996 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46688 * 300.00164 * 1 2 3 31 31 H 1.09005 * 109.46688 * 239.99836 * 2 1 3 32 32 H 1.09000 * 109.46806 * 120.00183 * 2 1 3 33 33 H 1.08000 * 126.18547 * 179.97438 * 8 7 6 34 34 H 1.08990 * 113.28289 * 5.65839 * 12 3 2 35 35 H 1.08993 * 113.46854 * 105.36743 * 13 12 3 36 36 H 1.09002 * 113.47211 * 334.92453 * 13 12 3 37 37 H 1.08998 * 109.47109 * 59.99911 * 17 15 14 38 38 H 1.09004 * 109.47317 * 299.99926 * 17 15 14 39 39 H 0.97000 * 119.99691 * 180.02562 * 22 21 19 40 40 H 1.09000 * 113.46965 * 87.44336 * 27 14 13 41 41 H 1.09000 * 113.46838 * 217.87266 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1343 2.0550 -1.1615 5 8 2.6195 3.1694 -1.1719 6 6 1.6711 1.4385 -2.4233 7 7 1.6439 2.0313 -3.6309 8 6 1.1708 1.1571 -4.4821 9 7 0.9071 0.0266 -3.8013 10 1 0.5468 -0.7912 -4.1785 11 7 1.2198 0.2115 -2.5650 12 6 2.3808 2.0300 1.2625 13 6 1.6991 3.3860 1.4916 14 7 2.9734 3.8758 2.0386 15 6 3.3508 4.8192 2.9240 16 8 2.5142 5.5029 3.4750 17 6 4.8122 5.0246 3.2292 18 16 4.9935 6.3514 4.4468 19 6 6.7475 6.3763 4.6133 20 1 7.3540 5.6898 4.0413 21 6 7.3500 7.2817 5.4757 22 7 8.6603 7.3007 5.5996 23 14 6.3014 8.4743 6.4593 24 1 5.9377 7.8570 7.7600 25 1 7.0672 9.7235 6.7012 26 1 5.0658 8.7907 5.6988 27 6 3.6551 2.8873 1.1894 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.0194 1.3145 -5.5398 34 1 2.3389 1.3581 2.1197 35 1 0.8962 3.3493 2.2279 36 1 1.4028 3.8844 0.5686 37 1 5.3398 5.2956 2.3147 38 1 5.2324 4.1028 3.6315 39 1 9.0813 7.9332 6.2026 40 1 3.8745 3.2541 0.1867 41 1 4.5187 2.4257 1.6681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080250327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:01 Heat of formation + Delta-G solvation = 92.537983 kcal Electronic energy + Delta-G solvation = -26566.611629 eV Core-core repulsion = 22612.927119 eV Total energy + Delta-G solvation = -3953.684510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.02161 -41.21717 -39.06639 -37.26448 -36.15961 -33.92453 -32.37989 -32.07710 -31.09233 -30.03539 -27.86520 -25.97508 -25.56446 -25.34387 -23.64258 -23.47333 -22.31300 -20.02438 -19.09543 -18.98424 -17.68213 -17.42780 -16.91571 -16.87349 -16.46825 -15.75060 -15.25367 -15.20280 -14.97560 -14.69501 -14.52828 -14.41709 -13.91270 -13.64713 -13.14705 -12.85324 -12.80292 -12.69654 -12.64484 -12.39197 -12.14735 -11.87281 -11.48145 -11.22257 -11.20077 -11.09780 -10.95191 -10.88239 -10.53990 -10.35353 -10.17550 -9.79745 -9.42587 -9.06348 -8.94274 -8.46262 -8.42446 -6.84940 -6.22901 -3.94041 0.80751 1.61302 1.96042 2.27597 2.75557 2.88508 3.04611 3.27183 3.38208 3.56122 3.56879 3.67287 3.93798 4.12972 4.22785 4.38984 4.54965 4.57797 4.76451 4.86196 4.91041 5.06003 5.16012 5.17503 5.21652 5.39164 5.43271 5.50424 5.56092 5.64053 5.69476 5.72922 5.86120 5.88015 5.97463 6.12976 6.17609 6.34095 6.81931 7.39046 7.73420 7.89607 8.00405 8.48279 8.53076 9.23359 10.86359 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027376 B = 0.002180 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.553685 B =12842.878276 C =13195.172077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.587 5.587 4 C 0.612 3.388 5 O -0.493 6.493 6 C 0.155 3.845 7 N -0.459 5.459 8 C 0.199 3.801 9 N -0.403 5.403 10 H 0.451 0.549 11 N -0.270 5.270 12 C 0.110 3.890 13 C 0.097 3.903 14 N -0.643 5.643 15 C 0.565 3.435 16 O -0.518 6.518 17 C -0.114 4.114 18 S -0.143 6.143 19 C -0.519 4.519 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.078 3.922 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.270 0.730 40 H 0.121 0.879 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 -24.138 -21.775 37.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.396 3.604 5 O -0.363 6.363 6 C -0.125 4.125 7 N -0.183 5.183 8 C -0.099 4.099 9 N -0.125 5.125 10 H 0.298 0.702 11 N -0.112 5.112 12 C 0.006 3.994 13 C -0.027 4.027 14 N -0.381 5.381 15 C 0.354 3.646 16 O -0.392 6.392 17 C -0.264 4.264 18 S 0.084 5.916 19 C -0.666 4.666 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.046 4.046 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.247 0.753 34 H 0.151 0.849 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.492 -22.176 -20.163 35.753 hybrid contribution 0.456 -0.916 -0.862 1.338 sum -19.036 -23.093 -21.025 36.574 Atomic orbital electron populations 1.22105 0.95514 1.02217 1.02122 1.21953 0.95032 0.80965 1.04305 1.47572 1.64638 1.14739 1.05058 1.16441 0.78755 0.84533 0.80710 1.90805 1.42048 1.18409 1.85082 1.23794 1.05091 0.88461 0.95200 1.71356 1.17948 1.30038 0.99003 1.26780 0.99097 0.82720 1.01304 1.45315 1.45841 1.15684 1.05656 0.70214 1.74501 1.17519 1.19269 0.99894 1.23159 0.97134 0.93490 0.85665 1.23265 0.89259 0.90996 0.99190 1.49205 1.10046 1.37330 1.41543 1.19811 0.90716 0.76874 0.77150 1.90705 1.53617 1.44336 1.50585 1.23203 0.94010 1.04651 1.04561 1.84762 1.10800 1.43456 1.52609 1.22317 0.88727 1.24782 1.30822 0.89367 1.24710 0.94685 0.96343 0.95612 1.69941 1.08536 1.36538 1.36771 0.86732 0.82179 0.81080 0.81858 1.19226 1.19965 1.15876 1.23832 0.95803 0.87076 0.97872 0.92617 0.91507 0.92493 0.88097 0.89836 0.75325 0.84869 0.90315 0.89049 0.88433 0.88578 0.91991 0.86161 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.67 37.16 0.36 -0.49 16 2 C 0.10 0.57 5.73 -4.04 -0.02 0.54 16 3 N -0.59 -5.11 2.77 -166.83 -0.46 -5.58 16 4 C 0.61 6.97 7.11 -12.31 -0.09 6.88 16 5 O -0.49 -7.37 12.66 5.32 0.07 -7.30 16 6 C 0.15 1.50 7.32 -156.35 -1.15 0.36 16 7 N -0.46 -4.48 11.41 -12.36 -0.14 -4.63 16 8 C 0.20 0.78 13.14 -90.49 -1.19 -0.40 16 9 N -0.40 -1.05 6.93 29.56 0.20 -0.85 16 10 H 0.45 -0.82 8.96 -190.21 -1.70 -2.53 16 11 N -0.27 -1.66 7.37 32.08 0.24 -1.43 16 12 C 0.11 1.07 4.80 -67.68 -0.32 0.74 16 13 C 0.10 1.27 8.04 -8.51 -0.07 1.20 16 14 N -0.64 -10.33 3.69 -185.08 -0.68 -11.01 16 15 C 0.56 11.59 8.10 -10.99 -0.09 11.50 16 16 O -0.52 -12.47 16.64 5.56 0.09 -12.38 16 17 C -0.11 -2.45 5.98 36.01 0.22 -2.23 16 18 S -0.14 -3.82 18.55 -107.50 -1.99 -5.82 16 19 C -0.52 -15.50 10.04 30.94 0.31 -15.19 16 20 H 0.09 2.74 8.03 -52.49 -0.42 2.32 16 21 C 0.09 2.86 5.50 -17.43 -0.10 2.77 16 22 N -0.88 -27.24 13.97 55.49 0.78 -26.47 16 23 Si 0.86 22.46 27.74 -169.99 -4.71 17.75 16 24 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.23 -6.18 6.74 56.52 0.38 -5.80 16 27 C 0.08 0.98 7.78 -8.38 -0.07 0.92 16 28 H 0.05 0.37 6.61 -51.93 -0.34 0.03 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.57 5.59 -51.93 -0.29 0.28 16 32 H 0.08 0.34 7.88 -51.93 -0.41 -0.07 16 33 H 0.23 -0.24 8.06 -52.49 -0.42 -0.66 16 34 H 0.13 0.98 7.92 -51.93 -0.41 0.57 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.31 6.49 -51.93 -0.34 0.97 16 37 H 0.10 2.03 8.14 -51.92 -0.42 1.60 16 38 H 0.10 1.90 8.14 -51.91 -0.42 1.48 16 39 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.12 1.71 5.20 -51.93 -0.27 1.44 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -41.18 357.79 -9.73 -50.91 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -6.30 Total: -5.20 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -2.20 Total: 6.59 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.07 Total: -49.95 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.16 Total: -19.68 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -1.99 Total: -5.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -41.18 -9.73 -50.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080250327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.448 kcal (2) G-P(sol) polarization free energy of solvation -41.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds