Wall clock time and date at job start Sat Apr 11 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48501 * 109.46765 * 240.00041 * 3 2 1 5 5 H 1.48500 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46779 * 120.00436 * 3 2 1 7 7 C 1.38812 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99620 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.46771 * 125.36115 * 359.96890 * 9 7 2 11 11 C 1.53910 * 107.62905 * 178.78896 * 10 9 7 12 12 H 1.09004 * 109.52157 * 100.77336 * 11 10 9 13 13 O 1.40853 * 110.30785 * 221.41046 * 11 10 9 14 14 C 1.41323 * 118.30395 * 68.00315 * 13 11 10 15 15 C 1.51959 * 111.60796 * 56.90310 * 14 13 11 16 16 N 1.44972 * 111.93668 * 319.69027 * 15 14 13 17 17 C 1.34772 * 117.33680 * 203.73124 * 16 15 14 18 18 O 1.21283 * 120.00229 * 177.45333 * 17 16 15 19 19 C 1.50706 * 120.00221 * 357.45958 * 17 16 15 20 20 N 1.46494 * 109.47222 * 179.97438 * 19 17 16 21 21 C 1.36377 * 125.96432 * 269.68865 * 20 19 17 22 22 O 1.35628 * 125.98708 * 0.03771 * 21 20 19 23 23 N 1.30910 * 108.02276 * 179.88394 * 21 20 19 24 24 N 1.40117 * 107.94060 * 0.37487 * 23 21 20 25 25 C 1.30908 * 107.93732 * 359.76136 * 24 23 21 26 26 O 1.35637 * 125.98635 * 179.97438 * 25 24 23 27 27 C 1.44539 * 125.32035 * 24.01145 * 16 15 14 28 28 H 1.09009 * 109.64197 * 106.19334 * 27 16 15 29 29 C 1.46861 * 125.36356 * 179.97438 * 9 7 2 30 30 H 0.96993 * 119.99584 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.82653 * 59.26432 * 10 9 7 32 32 H 1.08996 * 109.82671 * 298.31938 * 10 9 7 33 33 H 1.08992 * 109.05343 * 296.34985 * 14 13 11 34 34 H 1.08998 * 109.04951 * 177.44585 * 14 13 11 35 35 H 1.08997 * 108.98917 * 199.05537 * 15 14 13 36 36 H 1.08997 * 108.99069 * 80.31805 * 15 14 13 37 37 H 1.09000 * 109.46984 * 59.99936 * 19 17 16 38 38 H 1.09001 * 109.46571 * 299.99916 * 19 17 16 39 39 H 0.96700 * 114.00018 * 90.00136 * 22 21 20 40 40 H 0.96690 * 114.00225 * 270.02695 * 26 25 24 41 41 H 1.08998 * 110.06923 * 317.05570 * 29 9 7 42 42 H 1.09007 * 110.06985 * 78.51979 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1357 -2.5252 -0.0016 11 6 -0.4627 -4.0288 -0.0340 12 1 -0.7257 -4.3661 0.9686 13 8 -1.5365 -4.2768 -0.9112 14 6 -1.3293 -4.0827 -2.2956 15 6 -0.1716 -4.9212 -2.8112 16 7 0.9381 -4.9438 -1.8786 17 6 2.1613 -5.2091 -2.3785 18 8 3.1305 -5.1946 -1.6496 19 6 2.3247 -5.5237 -3.8433 20 7 3.7387 -5.7725 -4.1345 21 6 4.6551 -4.8364 -4.5137 22 8 4.4171 -3.5124 -4.6866 23 7 5.8055 -5.4392 -4.6785 24 7 5.6219 -6.8013 -4.4059 25 6 4.3671 -6.9816 -4.0793 26 8 3.7925 -8.1639 -3.7451 27 6 0.8387 -4.7107 -0.4556 28 1 0.9522 -5.6539 0.0790 29 6 1.9378 -3.7230 -0.0028 30 1 -0.4849 0.8400 0.0004 31 1 -0.5528 -2.0372 -0.8825 32 1 -0.5491 -2.0763 0.9015 33 1 -1.1156 -3.0298 -2.4792 34 1 -2.2362 -4.3594 -2.8333 35 1 0.1707 -4.5079 -3.7599 36 1 -0.5180 -5.9416 -2.9749 37 1 1.9749 -4.6795 -4.4374 38 1 1.7408 -6.4098 -4.0918 39 1 4.5490 -2.9816 -3.8891 40 1 3.4259 -8.6493 -4.4967 41 1 2.7749 -3.7500 -0.7003 42 1 2.2790 -3.9790 1.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083258762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:05 Heat of formation + Delta-G solvation = 6.792777 kcal Electronic energy + Delta-G solvation = -31546.783934 eV Core-core repulsion = 27146.628362 eV Total energy + Delta-G solvation = -4400.155572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.46642 -40.95490 -38.64786 -38.31807 -37.20625 -36.08860 -35.14415 -34.46194 -32.50331 -30.17956 -29.69292 -29.04029 -28.05025 -26.88810 -24.70692 -23.50192 -22.91590 -22.35058 -21.42187 -20.22723 -19.10453 -19.01228 -18.52235 -17.87914 -17.29061 -16.88387 -16.73646 -16.37070 -15.78603 -15.53502 -15.41386 -15.10430 -14.82235 -14.36731 -14.09892 -13.84528 -13.64754 -13.26782 -13.07755 -12.88663 -12.53511 -12.44460 -12.28128 -12.04770 -11.60817 -11.52030 -11.21348 -11.08705 -10.82336 -10.74321 -10.71959 -10.68226 -10.37796 -10.21518 -9.83394 -9.55566 -9.53957 -9.06698 -8.69938 -8.49239 -6.91986 -5.81600 -3.15601 1.30164 1.57775 2.10284 2.32599 2.75658 3.09543 3.33930 3.39407 3.39931 3.60206 3.89329 4.04198 4.14648 4.41156 4.53325 4.64621 4.86532 4.93447 5.05170 5.07298 5.10172 5.25304 5.40557 5.49282 5.51034 5.55957 5.68697 5.81398 5.90427 5.91583 6.12257 6.27866 6.64880 6.86131 6.93263 7.10487 7.19321 7.27831 7.41124 7.60270 7.74415 7.75521 7.97199 8.15182 9.11588 9.71805 10.34553 11.29525 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.004485 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.637541 B = 6241.242008 C = 7770.029911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.111 0.889 13 O -0.369 6.369 14 C 0.058 3.942 15 C 0.073 3.927 16 N -0.575 5.575 17 C 0.491 3.509 18 O -0.509 6.509 19 C 0.083 3.917 20 N -0.497 5.497 21 C 0.422 3.578 22 O -0.439 6.439 23 N -0.296 5.296 24 N -0.297 5.297 25 C 0.414 3.586 26 O -0.433 6.433 27 C 0.109 3.891 28 H 0.075 0.925 29 C 0.112 3.888 30 H 0.253 0.747 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.421 0.579 40 H 0.408 0.592 41 H 0.082 0.918 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -13.847 -10.444 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.027 3.973 11 C 0.010 3.990 12 H 0.129 0.871 13 O -0.286 6.286 14 C -0.019 4.019 15 C -0.051 4.051 16 N -0.309 5.309 17 C 0.276 3.724 18 O -0.384 6.384 19 C -0.044 4.044 20 N -0.217 5.217 21 C 0.112 3.888 22 O -0.240 6.240 23 N -0.140 5.140 24 N -0.141 5.141 25 C 0.104 3.896 26 O -0.232 6.232 27 C 0.004 3.996 28 H 0.093 0.907 29 C -0.014 4.014 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.281 0.719 40 H 0.266 0.734 41 H 0.099 0.901 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.612 -13.916 -10.260 17.364 hybrid contribution -1.132 1.321 0.342 1.773 sum -2.745 -12.595 -9.917 16.264 Atomic orbital electron populations 1.69932 1.04844 1.25267 1.57044 1.24790 0.95730 0.97664 1.02068 0.86192 0.78465 0.83057 0.78010 1.21167 1.21538 1.21083 1.18980 0.90395 0.82161 1.44009 0.90505 1.44218 1.01054 1.00165 1.87468 1.21677 0.85261 0.87943 1.02373 1.23020 0.84515 0.98684 0.92754 0.87090 1.86892 1.37180 1.88927 1.15566 1.22204 0.97037 0.99702 0.82959 1.21761 0.89123 1.01468 0.92730 1.46551 1.06832 1.69152 1.08335 1.20529 0.83687 0.78593 0.89545 1.90710 1.38601 1.49643 1.59471 1.21832 0.80398 1.06015 0.96200 1.46627 1.11019 1.08670 1.55364 1.21336 0.85408 0.84466 0.97610 1.84863 1.89728 1.09815 1.39628 1.78377 1.14921 0.97946 1.22734 1.78323 1.09780 1.06322 1.19666 1.21210 0.88334 0.81004 0.99034 1.85022 1.76256 1.25897 1.36049 1.21918 0.99267 0.99231 0.79150 0.90715 1.22113 0.95494 0.84650 0.99136 0.93620 0.92548 0.92978 0.91773 0.87711 0.90097 0.91289 0.85286 0.85804 0.71898 0.73439 0.90093 0.95622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.97 10.26 55.49 0.57 -25.40 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.14 10.25 -15.06 -0.15 -6.30 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.70 3.39 -171.21 -0.58 -15.28 16 10 C 0.15 3.48 5.02 -3.42 -0.02 3.46 16 11 C 0.07 1.22 3.82 -26.33 -0.10 1.12 16 12 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 13 O -0.37 -5.83 10.24 -34.45 -0.35 -6.19 16 14 C 0.06 0.72 6.72 36.63 0.25 0.97 16 15 C 0.07 0.73 5.87 -5.39 -0.03 0.70 16 16 N -0.57 -8.02 3.08 -168.50 -0.52 -8.54 16 17 C 0.49 6.87 7.21 -10.98 -0.08 6.80 16 18 O -0.51 -9.24 13.32 5.55 0.07 -9.17 16 19 C 0.08 0.78 5.05 -5.19 -0.03 0.76 16 20 N -0.50 -6.00 2.25 -121.34 -0.27 -6.28 16 21 C 0.42 5.84 9.15 -88.80 -0.81 5.03 16 22 O -0.44 -5.26 13.57 -18.58 -0.25 -5.52 16 23 N -0.30 -4.77 12.72 29.66 0.38 -4.40 16 24 N -0.30 -4.62 12.72 29.66 0.38 -4.25 16 25 C 0.41 5.25 9.15 -88.81 -0.81 4.43 16 26 O -0.43 -3.99 13.58 -18.61 -0.25 -4.24 16 27 C 0.11 1.84 3.45 -68.24 -0.24 1.60 16 28 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 29 C 0.11 2.35 6.30 -3.03 -0.02 2.33 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.06 1.41 5.74 -51.93 -0.30 1.11 16 32 H 0.05 1.34 7.49 -51.93 -0.39 0.95 16 33 H 0.06 0.96 6.81 -51.93 -0.35 0.60 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.61 6.31 -51.93 -0.33 0.28 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.13 0.99 7.14 -51.93 -0.37 0.62 16 38 H 0.12 0.69 8.07 -51.93 -0.42 0.28 16 39 H 0.42 3.99 9.06 45.56 0.41 4.41 16 40 H 0.41 1.10 9.06 45.56 0.41 1.51 16 41 H 0.08 1.80 4.81 -52.39 -0.25 1.55 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -37.37 344.84 -6.04 -43.41 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.24 Total: 3.46 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: -2.14 Total: 20.63 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.05 Total: -64.14 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.78 Total: -25.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.37 -6.04 -43.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083258762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.205 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds