Wall clock time and date at job start Sat Apr 11 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00421 * 2 1 4 4 H 1.48498 * 109.46830 * 240.00012 * 3 2 1 5 5 H 1.48504 * 109.46773 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47004 * 119.99678 * 3 2 1 7 7 C 1.38955 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99837 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99866 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00232 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00099 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47354 * 179.97438 * 12 10 9 14 14 C 1.46843 * 110.99970 * 294.20914 * 13 12 10 15 15 C 1.53042 * 109.52278 * 174.15687 * 14 13 12 16 16 C 1.53127 * 109.27596 * 59.17923 * 15 14 13 17 17 H 1.09003 * 109.52393 * 62.24889 * 16 15 14 18 18 N 1.46501 * 109.52311 * 182.43840 * 16 15 14 19 19 C 1.34773 * 120.00054 * 275.00295 * 18 16 15 20 20 O 1.21501 * 120.00113 * 359.97438 * 19 18 16 21 21 C 1.48284 * 119.99596 * 180.02562 * 19 18 16 22 22 C 1.47492 * 128.70557 * 179.69804 * 21 19 18 23 23 N 1.30644 * 102.71117 * 179.90768 * 22 21 19 24 24 O 1.20841 * 109.62434 * 0.36721 * 23 22 21 25 25 N 1.20906 * 115.90209 * 359.73968 * 24 23 22 26 26 C 1.53123 * 109.15019 * 302.34079 * 16 15 14 27 27 H 1.08997 * 109.51083 * 297.71779 * 26 16 15 28 28 O 1.42906 * 109.49151 * 177.60597 * 26 16 15 29 29 C 1.46847 * 110.99982 * 169.99549 * 13 12 10 30 30 H 0.97007 * 119.99782 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00040 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46915 * 59.99330 * 12 10 9 33 33 H 1.09003 * 109.46819 * 299.99801 * 12 10 9 34 34 H 1.08993 * 109.46313 * 294.17341 * 14 13 12 35 35 H 1.09000 * 109.46480 * 54.15451 * 14 13 12 36 36 H 1.08997 * 109.50758 * 179.11703 * 15 14 13 37 37 H 1.08998 * 109.50897 * 299.20258 * 15 14 13 38 38 H 0.97001 * 119.99796 * 95.00108 * 18 16 15 39 39 H 1.07991 * 128.64446 * 0.03534 * 22 21 19 40 40 H 0.96697 * 113.99659 * 180.20282 * 28 26 16 41 41 H 1.09002 * 109.46481 * 305.85957 * 29 13 12 42 42 H 1.08994 * 109.46283 * 65.83811 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 2.9673 -6.0137 -1.2520 15 6 4.0472 -7.0941 -1.1587 16 6 3.3840 -8.4514 -0.9083 17 1 2.7370 -8.7014 -1.7492 18 7 4.4160 -9.4806 -0.7601 19 6 4.9318 -10.0798 -1.8516 20 8 4.5405 -9.7668 -2.9585 21 6 5.9759 -11.1220 -1.7015 22 6 6.6618 -11.8984 -2.7513 23 7 7.4720 -12.6584 -2.0638 24 8 7.3351 -12.4349 -0.8842 25 7 6.5188 -11.5901 -0.5979 26 6 2.5504 -8.3743 0.3738 27 1 3.2034 -8.1626 1.2204 28 8 1.8835 -9.6204 0.5846 29 6 1.5138 -7.2569 0.2360 30 1 -0.4850 0.8401 0.0004 31 1 0.3532 -2.3906 -0.0005 32 1 0.6171 -4.9204 -0.8913 33 1 0.6166 -4.9209 0.8887 34 1 2.2993 -6.2387 -2.0833 35 1 3.4372 -5.0440 -1.4159 36 1 4.6079 -7.1299 -2.0927 37 1 4.7242 -6.8621 -0.3366 38 1 4.7281 -9.7308 0.1236 39 1 6.5290 -11.8491 -3.8219 40 1 1.3332 -9.6425 1.3795 41 1 0.9278 -7.1901 1.1527 42 1 0.8527 -7.4763 -0.6024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100041561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:16 Heat of formation + Delta-G solvation = 10.689029 kcal Electronic energy + Delta-G solvation = -29032.941384 eV Core-core repulsion = 24632.954766 eV Total energy + Delta-G solvation = -4399.986618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.33321 -40.53711 -39.20275 -38.01524 -36.13014 -35.35383 -34.92482 -34.88364 -33.89825 -31.76199 -31.17386 -29.75407 -27.68735 -26.22399 -24.70188 -24.33403 -23.30868 -22.68452 -21.08404 -20.33095 -19.44914 -19.27849 -18.91189 -17.99474 -17.92549 -17.42632 -16.75172 -16.17003 -15.65930 -15.46231 -15.11548 -14.92878 -14.70002 -14.41224 -14.18863 -14.08477 -13.69878 -13.50975 -13.19595 -13.06456 -12.89611 -12.47740 -12.34712 -12.03283 -11.77713 -11.60411 -11.46146 -11.42521 -11.21027 -11.14101 -10.90504 -10.83785 -10.54594 -10.46836 -10.30542 -10.23623 -9.54354 -9.41453 -8.53440 -8.04667 -7.95234 -6.45395 -3.86330 0.33429 0.90820 2.22666 2.57152 2.99619 3.07679 3.17403 3.23666 3.27556 3.52167 3.60699 3.84815 3.98864 4.19972 4.33597 4.41912 4.52352 4.75624 4.85269 4.91974 4.98624 5.13982 5.20818 5.22550 5.33421 5.51309 5.60251 5.62392 5.75087 5.80083 5.90109 5.98986 6.20584 6.26855 6.38382 6.94637 7.11725 7.16379 7.38384 7.51544 7.59545 7.97778 8.01834 8.57146 9.13995 9.49815 10.01102 10.72088 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.002055 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.641379 B =13621.788385 C =14332.778471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.578 6.578 12 C 0.047 3.953 13 N -0.513 5.513 14 C 0.052 3.948 15 C -0.121 4.121 16 C 0.154 3.846 17 H 0.097 0.903 18 N -0.694 5.694 19 C 0.607 3.393 20 O -0.512 6.512 21 C -0.039 4.039 22 C 0.038 3.962 23 N -0.354 5.354 24 O 0.342 5.658 25 N -0.320 5.320 26 C 0.102 3.898 27 H 0.075 0.925 28 O -0.564 6.564 29 C 0.027 3.973 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.029 0.971 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.408 0.592 39 H 0.228 0.772 40 H 0.381 0.619 41 H 0.083 0.917 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -22.465 -0.807 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.227 3.773 11 O -0.462 6.462 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.076 4.076 15 C -0.160 4.160 16 C 0.050 3.950 17 H 0.115 0.885 18 N -0.344 5.344 19 C 0.388 3.612 20 O -0.386 6.386 21 C -0.204 4.204 22 C -0.148 4.148 23 N -0.077 5.077 24 O 0.116 5.884 25 N -0.040 5.040 26 C 0.043 3.957 27 H 0.092 0.908 28 O -0.369 6.369 29 C -0.102 4.102 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.244 0.756 39 H 0.245 0.755 40 H 0.229 0.771 41 H 0.101 0.899 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.693 -22.683 -0.912 23.668 hybrid contribution -1.528 1.203 -0.371 1.980 sum 5.165 -21.480 -1.283 22.129 Atomic orbital electron populations 1.69600 1.05941 1.28313 1.50371 1.25269 0.95641 0.99755 0.97253 0.85916 0.78770 0.80440 0.79089 1.19899 1.20983 1.19875 1.19642 0.93330 0.82167 1.47785 0.87929 1.41858 1.09207 1.04584 1.64223 1.19684 0.88407 0.84492 0.84668 1.90485 1.13630 1.86831 1.55250 1.21839 0.93818 0.91006 1.01732 1.61487 1.25082 1.00936 1.36335 1.22283 0.94929 1.01499 0.88851 1.21949 0.98893 0.91768 1.03383 1.21259 0.88014 0.87458 0.98245 0.88514 1.45764 1.40338 1.39454 1.08879 1.16430 0.79925 0.79537 0.85271 1.90864 1.59719 1.63150 1.24835 1.26288 1.02847 1.02844 0.88470 1.27767 0.91811 0.91633 1.03541 1.75087 1.20345 1.20838 0.91437 1.85097 1.42376 1.40544 1.20410 1.75391 1.02339 1.02241 1.24051 1.22010 0.93170 0.83380 0.97172 0.90756 1.86537 1.66469 1.34077 1.49810 1.22748 0.95631 0.89872 1.01957 0.91788 0.77476 0.93208 0.89213 0.95306 0.86893 0.90271 0.90098 0.75629 0.75548 0.77080 0.89895 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 10 C 0.44 9.91 7.46 -10.98 -0.08 9.83 16 11 O -0.58 -14.76 13.90 5.55 0.08 -14.68 16 12 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 13 N -0.51 -7.71 4.40 -236.12 -1.04 -8.75 16 14 C 0.05 0.80 5.10 -3.83 -0.02 0.78 16 15 C -0.12 -1.57 5.67 -26.64 -0.15 -1.72 16 16 C 0.15 1.76 2.20 -67.80 -0.15 1.61 16 17 H 0.10 1.26 7.59 -51.93 -0.39 0.86 16 18 N -0.69 -7.17 4.99 -54.48 -0.27 -7.44 16 19 C 0.61 6.83 7.81 -12.13 -0.09 6.73 16 20 O -0.51 -7.09 16.71 5.36 0.09 -7.00 16 21 C -0.04 -0.37 7.56 -80.07 -0.61 -0.97 16 22 C 0.04 0.29 12.63 -14.29 -0.18 0.11 16 23 N -0.35 -2.98 12.22 30.72 0.38 -2.60 16 24 O 0.34 2.93 11.65 27.26 0.32 3.25 16 25 N -0.32 -2.92 12.13 33.49 0.41 -2.51 16 26 C 0.10 1.04 3.14 -26.65 -0.08 0.95 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 O -0.56 -5.10 13.23 -35.23 -0.47 -5.57 16 29 C 0.03 0.31 5.08 -3.84 -0.02 0.29 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.09 1.32 7.99 -51.93 -0.41 0.90 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 2.13 5.78 -51.93 -0.30 1.83 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.41 3.63 8.46 -40.82 -0.35 3.28 16 39 H 0.23 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.38 1.90 9.08 45.56 0.41 2.31 16 41 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -32.34 362.90 -5.30 -37.64 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.25 Total: 13.04 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -1.65 Total: 10.59 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.14 Total: -58.41 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.02 Total: -24.00 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.34 -5.30 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100041561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.327 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds