Wall clock time and date at job start Sat Apr 11 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00421 * 2 1 4 4 H 1.48498 * 109.46830 * 240.00012 * 3 2 1 5 5 H 1.48504 * 109.46773 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47004 * 119.99678 * 3 2 1 7 7 C 1.38955 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99837 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99866 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00232 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00099 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47354 * 179.97438 * 12 10 9 14 14 C 1.46843 * 110.99970 * 294.20914 * 13 12 10 15 15 C 1.53042 * 109.52278 * 174.15687 * 14 13 12 16 16 C 1.53127 * 109.27596 * 59.17923 * 15 14 13 17 17 H 1.09003 * 109.52393 * 62.24889 * 16 15 14 18 18 N 1.46501 * 109.52311 * 182.43840 * 16 15 14 19 19 C 1.34773 * 120.00054 * 275.00295 * 18 16 15 20 20 O 1.21501 * 120.00113 * 359.97438 * 19 18 16 21 21 C 1.48284 * 119.99596 * 180.02562 * 19 18 16 22 22 C 1.47492 * 128.70557 * 179.69804 * 21 19 18 23 23 N 1.30644 * 102.71117 * 179.90768 * 22 21 19 24 24 O 1.20841 * 109.62434 * 0.36721 * 23 22 21 25 25 N 1.20906 * 115.90209 * 359.73968 * 24 23 22 26 26 C 1.53123 * 109.15019 * 302.34079 * 16 15 14 27 27 H 1.08997 * 109.51083 * 297.71779 * 26 16 15 28 28 O 1.42906 * 109.49151 * 177.60597 * 26 16 15 29 29 C 1.46847 * 110.99982 * 169.99549 * 13 12 10 30 30 H 0.97007 * 119.99782 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00040 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46915 * 59.99330 * 12 10 9 33 33 H 1.09003 * 109.46819 * 299.99801 * 12 10 9 34 34 H 1.08993 * 109.46313 * 294.17341 * 14 13 12 35 35 H 1.09000 * 109.46480 * 54.15451 * 14 13 12 36 36 H 1.08997 * 109.50758 * 179.11703 * 15 14 13 37 37 H 1.08998 * 109.50897 * 299.20258 * 15 14 13 38 38 H 0.97001 * 119.99796 * 95.00108 * 18 16 15 39 39 H 1.07991 * 128.64446 * 0.03534 * 22 21 19 40 40 H 0.96697 * 113.99659 * 180.20282 * 28 26 16 41 41 H 1.09002 * 109.46481 * 305.85957 * 29 13 12 42 42 H 1.08994 * 109.46283 * 65.83811 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 2.9673 -6.0137 -1.2520 15 6 4.0472 -7.0941 -1.1587 16 6 3.3840 -8.4514 -0.9083 17 1 2.7370 -8.7014 -1.7492 18 7 4.4160 -9.4806 -0.7601 19 6 4.9318 -10.0798 -1.8516 20 8 4.5405 -9.7668 -2.9585 21 6 5.9759 -11.1220 -1.7015 22 6 6.6618 -11.8984 -2.7513 23 7 7.4720 -12.6584 -2.0638 24 8 7.3351 -12.4349 -0.8842 25 7 6.5188 -11.5901 -0.5979 26 6 2.5504 -8.3743 0.3738 27 1 3.2034 -8.1626 1.2204 28 8 1.8835 -9.6204 0.5846 29 6 1.5138 -7.2569 0.2360 30 1 -0.4850 0.8401 0.0004 31 1 0.3532 -2.3906 -0.0005 32 1 0.6171 -4.9204 -0.8913 33 1 0.6166 -4.9209 0.8887 34 1 2.2993 -6.2387 -2.0833 35 1 3.4372 -5.0440 -1.4159 36 1 4.6079 -7.1299 -2.0927 37 1 4.7242 -6.8621 -0.3366 38 1 4.7281 -9.7308 0.1236 39 1 6.5290 -11.8491 -3.8219 40 1 1.3332 -9.6425 1.3795 41 1 0.9278 -7.1901 1.1527 42 1 0.8527 -7.4763 -0.6024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100041561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:15 Heat of formation + Delta-G solvation = -18.268530 kcal Electronic energy + Delta-G solvation = -29034.197078 eV Core-core repulsion = 24632.954766 eV Total energy + Delta-G solvation = -4401.242312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.00902 -41.49458 -40.47192 -39.42946 -37.16841 -36.20255 -35.87965 -35.66684 -35.57398 -33.32296 -32.66945 -30.73283 -28.95259 -27.29076 -26.18744 -25.16665 -24.30357 -23.81149 -21.94345 -21.33908 -20.99463 -20.12773 -19.86777 -19.66377 -18.72277 -18.29612 -17.74554 -17.68060 -16.66078 -16.52100 -16.49910 -16.07744 -15.98938 -15.61201 -15.55537 -15.26383 -15.08182 -14.78204 -14.16411 -13.97005 -13.87936 -13.79552 -13.47243 -13.27308 -13.02668 -12.91693 -12.62333 -12.56394 -12.45433 -12.40968 -12.18452 -12.10838 -11.90226 -11.82822 -11.47708 -11.42831 -11.10311 -10.41651 -10.21629 -9.97717 -9.27834 -8.44969 -5.92997 -0.41000 0.27906 1.40266 1.41686 1.42347 1.52696 1.72341 2.07797 2.27920 2.28613 2.42906 2.59991 2.82494 3.09500 3.22048 3.37868 3.59451 3.67806 3.70982 3.86365 3.92927 4.10665 4.20746 4.29661 4.38953 4.41296 4.43508 4.53478 4.62197 4.66964 4.74467 4.87787 4.97282 5.14215 5.21077 5.42539 5.82958 6.03267 6.11881 6.13203 6.62620 6.74367 6.83641 7.15089 7.30418 7.59158 8.14826 8.72051 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.002055 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.641379 B =13621.788385 C =14332.778471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.612 6.612 12 C 0.059 3.941 13 N -0.526 5.526 14 C 0.056 3.944 15 C -0.110 4.110 16 C 0.159 3.841 17 H 0.084 0.916 18 N -0.687 5.687 19 C 0.608 3.392 20 O -0.542 6.542 21 C -0.053 4.053 22 C 0.053 3.947 23 N -0.361 5.361 24 O 0.345 5.655 25 N -0.320 5.320 26 C 0.115 3.885 27 H 0.081 0.919 28 O -0.568 6.568 29 C 0.029 3.971 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.417 0.583 39 H 0.255 0.745 40 H 0.402 0.598 41 H 0.108 0.892 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -23.841 -0.260 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.498 6.498 12 C -0.072 4.072 13 N -0.252 5.252 14 C -0.072 4.072 15 C -0.149 4.149 16 C 0.055 3.945 17 H 0.102 0.898 18 N -0.337 5.337 19 C 0.391 3.609 20 O -0.417 6.417 21 C -0.218 4.218 22 C -0.133 4.133 23 N -0.086 5.086 24 O 0.118 5.882 25 N -0.039 5.039 26 C 0.055 3.945 27 H 0.099 0.901 28 O -0.377 6.377 29 C -0.100 4.100 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.271 0.729 40 H 0.253 0.747 41 H 0.126 0.874 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.162 -24.085 -0.315 24.863 hybrid contribution -1.340 1.527 -0.536 2.101 sum 4.822 -22.558 -0.851 23.083 Atomic orbital electron populations 1.69661 1.06755 1.29248 1.50468 1.26005 0.96534 1.02334 0.96482 0.85023 0.77767 0.76872 0.78892 1.19850 1.19647 1.19718 1.19595 0.92657 0.83982 1.49734 0.90295 1.41929 1.09319 1.04689 1.65291 1.20762 0.88338 0.85904 0.82169 1.90469 1.15612 1.87718 1.56041 1.21726 0.93478 0.88219 1.03809 1.61427 1.25478 1.02262 1.36004 1.22097 0.95522 1.00030 0.89544 1.21788 0.98083 0.92262 1.02810 1.21073 0.88087 0.86533 0.98830 0.89784 1.45680 1.39918 1.38892 1.09217 1.16593 0.79880 0.79548 0.84902 1.90848 1.60820 1.64224 1.25850 1.26103 1.03173 1.03197 0.89339 1.28222 0.90448 0.90219 1.04425 1.75110 1.20814 1.21297 0.91348 1.85099 1.42121 1.40284 1.20666 1.75374 1.02233 1.02167 1.24098 1.21770 0.92838 0.83537 0.96361 0.90138 1.86510 1.66858 1.32970 1.51321 1.22862 0.95904 0.87940 1.03270 0.91386 0.77026 0.91492 0.86465 0.94753 0.91040 0.90928 0.90741 0.74639 0.72913 0.74732 0.87408 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 42.51 29.55 68.60 2.03 44.53 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -28.59 5.29 -306.98 -1.62 -30.21 16 10 C 0.44 20.02 7.46 87.66 0.65 20.68 16 11 O -0.61 -32.30 13.90 -3.07 -0.04 -32.35 16 12 C 0.06 1.86 5.45 85.56 0.47 2.33 16 13 N -0.53 -15.16 4.40 -900.96 -3.96 -19.12 16 14 C 0.06 1.74 5.10 86.33 0.44 2.18 16 15 C -0.11 -2.88 5.67 30.65 0.17 -2.70 16 16 C 0.16 3.47 2.20 45.07 0.10 3.57 16 17 H 0.08 2.10 7.59 -2.39 -0.02 2.09 16 18 N -0.69 -13.44 4.99 -444.59 -2.22 -15.66 16 19 C 0.61 13.19 7.81 86.92 0.68 13.87 16 20 O -0.54 -14.78 16.71 -3.72 -0.06 -14.84 16 21 C -0.05 -0.94 7.56 44.30 0.34 -0.60 16 22 C 0.05 0.71 12.63 87.31 1.10 1.81 16 23 N -0.36 -5.52 12.22 -61.40 -0.75 -6.27 16 24 O 0.35 5.46 11.65 140.84 1.64 7.10 16 25 N -0.32 -5.44 12.13 -52.06 -0.63 -6.07 16 26 C 0.12 2.05 3.14 30.65 0.10 2.15 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 O -0.57 -8.54 13.23 -148.98 -1.97 -10.51 16 29 C 0.03 0.56 5.08 86.32 0.44 1.00 16 30 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 31 H 0.40 18.69 7.90 -92.71 -0.73 17.95 16 32 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 33 H 0.12 3.12 7.99 -2.39 -0.02 3.10 16 34 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 2.82 5.78 -2.39 -0.01 2.81 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.42 6.78 8.46 -92.71 -0.78 6.00 16 39 H 0.25 1.75 8.06 -2.92 -0.02 1.73 16 40 H 0.40 2.51 9.08 -74.06 -0.67 1.83 16 41 H 0.11 1.63 8.02 -2.39 -0.02 1.61 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -71.07 362.90 -2.61 -73.68 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -1.07 Total: 31.92 kcal Atomic # 6 Polarization: 20.72 SS G_CDS: 5.77 Total: 26.48 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -8.90 Total: -126.03 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.44 Total: -50.59 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.07 -2.61 -73.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100041561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.412 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds