Wall clock time and date at job start Sat Apr 11 2020 05:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48498 * 109.46909 * 270.00042 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.99951 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.99876 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46903 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46849 * 111.00057 * 66.04731 * 13 12 10 15 15 C 1.53031 * 109.52341 * 174.16129 * 14 13 12 16 16 C 1.53124 * 109.28000 * 59.17971 * 15 14 13 17 17 H 1.08998 * 109.52290 * 62.24585 * 16 15 14 18 18 N 1.46502 * 109.52237 * 182.37710 * 16 15 14 19 19 C 1.34766 * 119.99814 * 274.99586 * 18 16 15 20 20 O 1.21503 * 120.00622 * 0.02562 * 19 18 16 21 21 C 1.48284 * 120.00094 * 179.97438 * 19 18 16 22 22 C 1.47485 * 128.71505 * 179.69938 * 21 19 18 23 23 N 1.30645 * 102.71782 * 179.85694 * 22 21 19 24 24 O 1.20834 * 109.61939 * 0.42693 * 23 22 21 25 25 N 1.20908 * 115.90728 * 359.69939 * 24 23 22 26 26 C 1.53127 * 109.15781 * 302.34559 * 16 15 14 27 27 H 1.08995 * 109.50014 * 177.63469 * 26 16 15 28 28 O 1.42901 * 109.50038 * 297.71225 * 26 16 15 29 29 C 1.46850 * 110.99723 * 301.83566 * 13 12 10 30 30 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 32 32 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 33 33 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 34 34 H 1.09008 * 109.45555 * 294.17704 * 14 13 12 35 35 H 1.08998 * 109.45846 * 54.15142 * 14 13 12 36 36 H 1.08999 * 109.50334 * 179.11617 * 15 14 13 37 37 H 1.08999 * 109.50482 * 299.23493 * 15 14 13 38 38 H 0.96997 * 119.99568 * 94.99975 * 18 16 15 39 39 H 1.08006 * 128.64034 * 359.97438 * 22 21 19 40 40 H 0.96705 * 113.99901 * 180.02562 * 28 26 16 41 41 H 1.08993 * 109.46463 * 305.85361 * 29 13 12 42 42 H 1.09000 * 109.46045 * 65.82867 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0061 14 6 2.9680 -6.0146 1.2562 15 6 3.8444 -7.2688 1.2822 16 6 4.7907 -7.2494 0.0786 17 1 5.4493 -6.3835 0.1470 18 7 5.5930 -8.4751 0.0667 19 6 6.7265 -8.5456 0.7922 20 8 7.0829 -7.5928 1.4566 21 6 7.5382 -9.7865 0.7807 22 6 8.8003 -10.0698 1.4893 23 7 9.0647 -11.2966 1.1265 24 8 8.2048 -11.6918 0.3752 25 7 7.3163 -10.9091 0.1308 26 6 3.9653 -7.1639 -1.2084 27 1 4.6346 -7.1073 -2.0668 28 8 3.1391 -8.3242 -1.3231 29 6 3.0854 -5.9126 -1.1621 30 1 -0.4849 0.8401 0.0004 31 1 0.3533 -2.3907 0.0043 32 1 0.6207 -4.9185 0.8995 33 1 0.6133 -4.9228 -0.8804 34 1 3.5999 -5.1285 1.3185 35 1 2.2831 -6.0325 2.1040 36 1 4.4272 -7.2865 2.2031 37 1 3.2123 -8.1555 1.2338 38 1 5.3083 -9.2359 -0.4634 39 1 9.3644 -9.4243 2.1464 40 1 2.5877 -8.3374 -2.1174 41 1 2.4860 -5.8565 -2.0707 42 1 3.7168 -5.0272 -1.0884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100041562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:19 Heat of formation + Delta-G solvation = 12.248793 kcal Electronic energy + Delta-G solvation = -29537.856747 eV Core-core repulsion = 25137.937766 eV Total energy + Delta-G solvation = -4399.918982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.29690 -40.46747 -39.33973 -37.88882 -35.55394 -35.26000 -34.84327 -34.77721 -33.87646 -31.62300 -31.21331 -29.75667 -27.56684 -26.15462 -24.67980 -24.29707 -23.13885 -22.57764 -20.93036 -20.16042 -19.41542 -19.37672 -18.83621 -18.05771 -17.80996 -16.89884 -16.58935 -16.03700 -15.62871 -15.43594 -15.08213 -14.79436 -14.62138 -14.54524 -14.22095 -13.99308 -13.53817 -13.33182 -13.22620 -12.84353 -12.67191 -12.31173 -12.20284 -11.75998 -11.70288 -11.49492 -11.36936 -11.28913 -11.15712 -11.06859 -10.88996 -10.66019 -10.46659 -10.39034 -10.31357 -9.89515 -9.53493 -9.28365 -9.26537 -8.06954 -7.46215 -6.51685 -3.93235 0.37934 0.94478 2.30646 2.63451 3.04867 3.09874 3.12491 3.20352 3.25891 3.58610 3.74719 4.05278 4.09872 4.33800 4.38067 4.51096 4.73266 4.84958 4.93355 4.96376 5.12236 5.19021 5.33508 5.48839 5.60255 5.73834 5.80372 5.90783 6.00051 6.07740 6.11389 6.19283 6.23474 6.45335 6.62498 7.08151 7.26542 7.34194 7.45265 7.63894 7.71831 7.94461 8.01704 8.48560 9.06418 9.42160 9.92127 10.64577 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.002264 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.087960 B =12361.921042 C =13154.301250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.554 5.554 10 C 0.403 3.597 11 O -0.595 6.595 12 C 0.041 3.959 13 N -0.503 5.503 14 C 0.045 3.955 15 C -0.117 4.117 16 C 0.156 3.844 17 H 0.105 0.895 18 N -0.696 5.696 19 C 0.601 3.399 20 O -0.510 6.510 21 C -0.038 4.038 22 C 0.038 3.962 23 N -0.355 5.355 24 O 0.341 5.659 25 N -0.320 5.320 26 C 0.107 3.893 27 H 0.061 0.939 28 O -0.557 6.557 29 C 0.004 3.996 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.412 0.588 39 H 0.228 0.772 40 H 0.379 0.621 41 H 0.072 0.928 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.315 -19.440 -1.239 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.121 0.879 9 N -0.189 5.189 10 C 0.189 3.811 11 O -0.483 6.483 12 C -0.091 4.091 13 N -0.226 5.226 14 C -0.083 4.083 15 C -0.156 4.156 16 C 0.052 3.948 17 H 0.123 0.877 18 N -0.347 5.347 19 C 0.382 3.618 20 O -0.383 6.383 21 C -0.204 4.204 22 C -0.148 4.148 23 N -0.078 5.078 24 O 0.115 5.885 25 N -0.041 5.041 26 C 0.047 3.953 27 H 0.078 0.922 28 O -0.362 6.362 29 C -0.125 4.125 30 H 0.083 0.917 31 H 0.227 0.773 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.248 0.752 39 H 0.245 0.755 40 H 0.226 0.774 41 H 0.090 0.910 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.209 -20.227 -0.720 22.236 hybrid contribution -0.232 2.367 -0.330 2.401 sum 8.977 -17.859 -1.050 20.016 Atomic orbital electron populations 1.69606 1.05979 1.28380 1.49774 1.25302 0.95635 0.99880 0.96976 0.85861 0.79292 0.80732 0.78450 1.20339 1.20819 1.19380 1.19716 0.93396 0.82360 1.47846 0.87920 1.42069 1.09344 1.04963 1.62491 1.21124 0.88822 0.85996 0.85140 1.90381 1.13928 1.86834 1.57183 1.22054 0.95436 0.88028 1.03555 1.62423 1.17799 1.40044 1.02292 1.22175 0.96579 0.97639 0.91915 1.21849 0.97181 0.99748 0.96798 1.21273 0.91493 0.86659 0.95370 0.87711 1.45881 1.22643 1.18660 1.47551 1.16518 0.80568 0.83881 0.80796 1.90888 1.70359 1.35623 1.41464 1.26338 0.98248 0.95852 0.99974 1.27778 0.94243 0.92006 1.00760 1.75082 1.12198 1.13509 1.07010 1.85092 1.21556 1.36604 1.45254 1.75405 1.10373 1.01018 1.17273 1.22077 0.91250 0.86138 0.95839 0.92155 1.86414 1.59156 1.41868 1.48797 1.23073 0.96878 0.98547 0.93976 0.91704 0.77345 0.89250 0.89311 0.91164 0.91160 0.91473 0.90444 0.75196 0.75539 0.77374 0.90974 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 13.05 55.50 0.72 -22.99 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 8 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 9 N -0.55 -13.33 5.29 -10.96 -0.06 -13.38 16 10 C 0.40 8.75 7.20 -10.98 -0.08 8.67 16 11 O -0.60 -14.41 11.20 5.54 0.06 -14.35 16 12 C 0.04 0.68 5.86 -4.98 -0.03 0.65 16 13 N -0.50 -7.69 4.74 -236.12 -1.12 -8.81 16 14 C 0.05 0.72 5.09 -3.84 -0.02 0.70 16 15 C -0.12 -1.61 5.51 -26.65 -0.15 -1.76 16 16 C 0.16 2.03 2.30 -67.80 -0.16 1.87 16 17 H 0.11 1.58 7.58 -51.93 -0.39 1.19 16 18 N -0.70 -7.88 5.05 -54.49 -0.28 -8.15 16 19 C 0.60 7.24 7.81 -12.13 -0.09 7.15 16 20 O -0.51 -7.63 16.71 5.36 0.09 -7.55 16 21 C -0.04 -0.38 7.56 -80.07 -0.61 -0.99 16 22 C 0.04 0.31 12.63 -14.29 -0.18 0.13 16 23 N -0.35 -3.10 12.22 30.71 0.38 -2.72 16 24 O 0.34 3.03 11.65 27.26 0.32 3.34 16 25 N -0.32 -3.05 12.13 33.49 0.41 -2.65 16 26 C 0.11 1.26 3.43 -26.65 -0.09 1.17 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 O -0.56 -5.88 12.06 -35.23 -0.42 -6.30 16 29 C 0.00 0.06 4.64 -3.83 -0.02 0.04 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 31 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 32 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.34 6.00 -51.92 -0.31 1.03 16 35 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.07 7.80 -51.93 -0.40 0.66 16 38 H 0.41 4.17 7.98 -40.82 -0.33 3.84 16 39 H 0.23 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.38 2.75 9.08 45.56 0.41 3.17 16 41 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 42 H 0.10 1.76 5.36 -51.93 -0.28 1.48 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -30.74 356.09 -5.30 -36.04 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -4.08 Total: 16.75 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -1.66 Total: 9.89 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.05 Total: -58.71 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.04 Total: -24.85 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.74 -5.30 -36.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100041562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.288 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds