Wall clock time and date at job start Sat Apr 11 2020 05:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48498 * 109.46909 * 270.00042 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.99951 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.99876 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46903 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46849 * 111.00057 * 66.04731 * 13 12 10 15 15 C 1.53031 * 109.52341 * 174.16129 * 14 13 12 16 16 C 1.53124 * 109.28000 * 59.17971 * 15 14 13 17 17 H 1.08998 * 109.52290 * 62.24585 * 16 15 14 18 18 N 1.46502 * 109.52237 * 182.37710 * 16 15 14 19 19 C 1.34766 * 119.99814 * 274.99586 * 18 16 15 20 20 O 1.21503 * 120.00622 * 0.02562 * 19 18 16 21 21 C 1.48284 * 120.00094 * 179.97438 * 19 18 16 22 22 C 1.47485 * 128.71505 * 179.69938 * 21 19 18 23 23 N 1.30645 * 102.71782 * 179.85694 * 22 21 19 24 24 O 1.20834 * 109.61939 * 0.42693 * 23 22 21 25 25 N 1.20908 * 115.90728 * 359.69939 * 24 23 22 26 26 C 1.53127 * 109.15781 * 302.34559 * 16 15 14 27 27 H 1.08995 * 109.50014 * 177.63469 * 26 16 15 28 28 O 1.42901 * 109.50038 * 297.71225 * 26 16 15 29 29 C 1.46850 * 110.99723 * 301.83566 * 13 12 10 30 30 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 32 32 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 33 33 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 34 34 H 1.09008 * 109.45555 * 294.17704 * 14 13 12 35 35 H 1.08998 * 109.45846 * 54.15142 * 14 13 12 36 36 H 1.08999 * 109.50334 * 179.11617 * 15 14 13 37 37 H 1.08999 * 109.50482 * 299.23493 * 15 14 13 38 38 H 0.96997 * 119.99568 * 94.99975 * 18 16 15 39 39 H 1.08006 * 128.64034 * 359.97438 * 22 21 19 40 40 H 0.96705 * 113.99901 * 180.02562 * 28 26 16 41 41 H 1.08993 * 109.46463 * 305.85361 * 29 13 12 42 42 H 1.09000 * 109.46045 * 65.82867 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0061 14 6 2.9680 -6.0146 1.2562 15 6 3.8444 -7.2688 1.2822 16 6 4.7907 -7.2494 0.0786 17 1 5.4493 -6.3835 0.1470 18 7 5.5930 -8.4751 0.0667 19 6 6.7265 -8.5456 0.7922 20 8 7.0829 -7.5928 1.4566 21 6 7.5382 -9.7865 0.7807 22 6 8.8003 -10.0698 1.4893 23 7 9.0647 -11.2966 1.1265 24 8 8.2048 -11.6918 0.3752 25 7 7.3163 -10.9091 0.1308 26 6 3.9653 -7.1639 -1.2084 27 1 4.6346 -7.1073 -2.0668 28 8 3.1391 -8.3242 -1.3231 29 6 3.0854 -5.9126 -1.1621 30 1 -0.4849 0.8401 0.0004 31 1 0.3533 -2.3907 0.0043 32 1 0.6207 -4.9185 0.8995 33 1 0.6133 -4.9228 -0.8804 34 1 3.5999 -5.1285 1.3185 35 1 2.2831 -6.0325 2.1040 36 1 4.4272 -7.2865 2.2031 37 1 3.2123 -8.1555 1.2338 38 1 5.3083 -9.2359 -0.4634 39 1 9.3644 -9.4243 2.1464 40 1 2.5877 -8.3374 -2.1174 41 1 2.4860 -5.8565 -2.0707 42 1 3.7168 -5.0272 -1.0884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100041562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:19 Heat of formation + Delta-G solvation = -15.325040 kcal Electronic energy + Delta-G solvation = -29539.052438 eV Core-core repulsion = 25137.937766 eV Total energy + Delta-G solvation = -4401.114673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.01580 -41.58515 -40.68818 -39.26997 -36.83019 -36.10951 -35.82927 -35.60745 -35.53169 -33.36431 -32.57998 -30.87860 -28.88706 -27.29085 -26.17576 -25.15976 -24.29294 -23.78277 -21.89221 -21.35205 -21.00581 -20.13389 -19.93398 -19.61441 -18.71394 -18.07818 -17.66357 -17.54642 -16.76251 -16.54304 -16.41636 -16.06053 -15.89126 -15.77804 -15.62155 -15.43248 -15.02098 -14.65526 -14.09039 -13.95739 -13.82588 -13.66088 -13.45091 -13.03687 -13.02834 -12.65980 -12.58630 -12.45670 -12.44824 -12.40906 -12.18207 -12.14102 -11.89969 -11.79740 -11.48019 -11.41808 -10.94122 -10.83117 -10.31969 -10.00051 -8.98842 -8.47417 -5.97139 -0.41508 0.27323 1.34315 1.39389 1.41298 1.51228 1.71179 2.00681 2.27160 2.28641 2.43113 2.81045 2.92331 3.18460 3.26284 3.30359 3.61758 3.67833 3.71256 3.79332 4.03494 4.14564 4.38471 4.40984 4.41483 4.43489 4.51930 4.67103 4.69718 4.82445 4.88595 4.94050 5.10315 5.15051 5.34926 5.41128 5.87561 6.03608 6.06216 6.16027 6.57480 6.76190 6.95934 7.10632 7.30383 7.54476 8.09154 8.67533 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.002264 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.087960 B =12361.921042 C =13154.301250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.569 5.569 10 C 0.407 3.593 11 O -0.621 6.621 12 C 0.049 3.951 13 N -0.489 5.489 14 C 0.047 3.953 15 C -0.105 4.105 16 C 0.157 3.843 17 H 0.078 0.922 18 N -0.686 5.686 19 C 0.604 3.396 20 O -0.544 6.544 21 C -0.053 4.053 22 C 0.052 3.948 23 N -0.360 5.360 24 O 0.348 5.652 25 N -0.318 5.318 26 C 0.123 3.877 27 H 0.079 0.921 28 O -0.556 6.556 29 C 0.004 3.996 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.421 0.579 39 H 0.254 0.746 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 -21.075 -1.796 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.206 5.206 10 C 0.194 3.806 11 O -0.509 6.509 12 C -0.082 4.082 13 N -0.211 5.211 14 C -0.081 4.081 15 C -0.144 4.144 16 C 0.052 3.948 17 H 0.096 0.904 18 N -0.337 5.337 19 C 0.387 3.613 20 O -0.420 6.420 21 C -0.218 4.218 22 C -0.134 4.134 23 N -0.085 5.085 24 O 0.120 5.880 25 N -0.037 5.037 26 C 0.062 3.938 27 H 0.097 0.903 28 O -0.365 6.365 29 C -0.125 4.125 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.258 0.742 39 H 0.270 0.730 40 H 0.247 0.753 41 H 0.108 0.892 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.972 -21.902 -1.314 23.705 hybrid contribution -0.123 2.743 -0.167 2.751 sum 8.849 -19.158 -1.481 21.155 Atomic orbital electron populations 1.69662 1.06742 1.29273 1.50135 1.26003 0.96503 1.02356 0.96356 0.84987 0.77870 0.77231 0.78628 1.19618 1.19621 1.20025 1.19621 0.92594 0.84194 1.49739 0.90471 1.42141 1.09406 1.04987 1.64048 1.22217 0.88782 0.87136 0.82484 1.90407 1.15614 1.87594 1.57316 1.22167 0.95448 0.84986 1.05646 1.62529 1.17655 1.38539 1.02347 1.22121 0.96438 0.97015 0.92557 1.21713 0.96915 0.98795 0.96970 1.21079 0.91292 0.86492 0.95927 0.90384 1.45726 1.22299 1.18273 1.47404 1.16688 0.80515 0.84090 0.80036 1.90875 1.71184 1.37050 1.42882 1.26056 0.99046 0.95299 1.01370 1.28208 0.93320 0.91811 1.00014 1.75112 1.12227 1.13801 1.07319 1.85095 1.21404 1.36339 1.45158 1.75390 1.10487 1.00870 1.16927 1.21801 0.90954 0.85337 0.95676 0.90336 1.86386 1.59335 1.40521 1.50212 1.23079 0.96733 0.98456 0.94243 0.91301 0.76994 0.87440 0.86711 0.95071 0.90444 0.92118 0.89593 0.74165 0.73025 0.75258 0.89245 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.60 13.05 21.66 0.28 -48.32 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.33 -18.31 9.68 84.04 0.81 -17.49 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 9 N -0.57 -27.94 5.29 -306.97 -1.62 -29.56 16 10 C 0.41 17.89 7.20 87.65 0.63 18.52 16 11 O -0.62 -31.21 11.20 -3.08 -0.03 -31.24 16 12 C 0.05 1.56 5.86 85.55 0.50 2.06 16 13 N -0.49 -14.33 4.74 -900.93 -4.27 -18.60 16 14 C 0.05 1.50 5.09 86.32 0.44 1.94 16 15 C -0.11 -2.85 5.51 30.65 0.17 -2.68 16 16 C 0.16 4.02 2.30 45.07 0.10 4.13 16 17 H 0.08 2.47 7.58 -2.39 -0.02 2.45 16 18 N -0.69 -14.84 5.05 -444.60 -2.24 -17.08 16 19 C 0.60 14.23 7.81 86.92 0.68 14.90 16 20 O -0.54 -16.45 16.71 -3.72 -0.06 -16.52 16 21 C -0.05 -0.98 7.56 44.29 0.34 -0.65 16 22 C 0.05 0.75 12.63 87.31 1.10 1.85 16 23 N -0.36 -5.65 12.22 -61.44 -0.75 -6.40 16 24 O 0.35 5.58 11.65 140.85 1.64 7.22 16 25 N -0.32 -5.55 12.13 -52.05 -0.63 -6.18 16 26 C 0.12 2.70 3.43 30.65 0.10 2.80 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 O -0.56 -10.04 12.06 -148.98 -1.80 -11.83 16 29 C 0.00 0.10 4.64 86.32 0.40 0.50 16 30 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 32 H 0.11 3.08 8.06 -2.39 -0.02 3.07 16 33 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.03 1.24 6.00 -2.38 -0.01 1.23 16 35 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 2.21 7.80 -2.39 -0.02 2.19 16 38 H 0.42 7.72 7.98 -92.71 -0.74 6.98 16 39 H 0.25 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.40 4.27 9.08 -74.05 -0.67 3.59 16 41 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 42 H 0.06 2.12 5.36 -2.39 -0.01 2.11 16 Total: -1.00 -67.97 356.09 -2.74 -70.71 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -1.02 Total: 37.62 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 5.75 Total: 25.73 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -9.24 Total: -126.16 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.25 Total: -52.37 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.97 -2.74 -70.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100041562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.383 kcal (2) G-P(sol) polarization free energy of solvation -67.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds