Wall clock time and date at job start Sat Apr 11 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86801 * 119.99959 * 2 1 4 4 H 1.48500 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47026 * 300.00273 * 3 2 1 6 6 H 1.48497 * 109.47125 * 60.00002 * 3 2 1 7 7 C 1.38950 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99635 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00506 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99775 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.46842 * 111.00175 * 293.95223 * 13 12 10 15 15 C 1.53036 * 109.52822 * 185.83658 * 14 13 12 16 16 C 1.53118 * 109.27793 * 300.82678 * 15 14 13 17 17 H 1.09001 * 109.52050 * 297.74428 * 16 15 14 18 18 N 1.46502 * 109.52234 * 177.55605 * 16 15 14 19 19 C 1.34773 * 119.99939 * 85.31477 * 18 16 15 20 20 O 1.21498 * 120.00172 * 359.97438 * 19 18 16 21 21 C 1.48284 * 119.99863 * 179.97438 * 19 18 16 22 22 C 1.47494 * 128.71184 * 180.02562 * 21 19 18 23 23 N 1.30638 * 102.71737 * 180.02562 * 22 21 19 24 24 O 1.20842 * 109.61763 * 359.97438 * 23 22 21 25 25 N 1.20897 * 115.90760 * 359.69345 * 24 23 22 26 26 C 1.53119 * 109.16297 * 57.65122 * 16 15 14 27 27 H 1.08997 * 109.50335 * 62.32492 * 26 16 15 28 28 O 1.42905 * 109.50256 * 182.40703 * 26 16 15 29 29 C 1.46850 * 111.00173 * 58.16379 * 13 12 10 30 30 H 0.96999 * 119.99779 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99849 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47155 * 59.99430 * 12 10 9 33 33 H 1.09003 * 109.46830 * 299.99859 * 12 10 9 34 34 H 1.09003 * 109.45875 * 65.82603 * 14 13 12 35 35 H 1.08996 * 109.45779 * 305.85228 * 14 13 12 36 36 H 1.08996 * 109.50962 * 180.88393 * 15 14 13 37 37 H 1.09001 * 109.50094 * 60.76469 * 15 14 13 38 38 H 0.97005 * 120.00203 * 265.31181 * 18 16 15 39 39 H 1.07996 * 128.64013 * 359.97438 * 22 21 19 40 40 H 0.96696 * 114.00036 * 179.97438 * 28 26 16 41 41 H 1.08999 * 109.45823 * 54.14503 * 29 13 12 42 42 H 1.08999 * 109.46398 * 294.18241 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1984 -5.9795 -0.0027 14 6 2.9634 -6.0173 -1.2555 15 6 3.8398 -7.2716 -1.2821 16 6 4.7906 -7.2494 -0.0821 17 1 5.4489 -6.3838 -0.1550 18 7 5.5918 -8.4759 -0.0697 19 6 6.7260 -8.5472 -0.7943 20 8 7.0836 -7.5945 -1.4582 21 6 7.5373 -9.7883 -0.7813 22 6 8.7970 -10.0744 -1.4931 23 7 9.0636 -11.2992 -1.1251 24 8 8.2024 -11.6939 -0.3749 25 7 7.3172 -10.9086 -0.1270 26 6 3.9701 -7.1613 1.2077 27 1 3.3408 -8.0464 1.2999 28 8 4.8518 -7.0837 2.3296 29 6 3.0901 -5.9101 1.1621 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3906 -0.0016 32 1 0.6174 -4.9205 -0.8924 33 1 0.6169 -4.9208 0.8876 34 1 3.5951 -5.1315 -1.3221 35 1 2.2753 -6.0370 -2.1006 36 1 4.4192 -7.2913 -2.2051 37 1 3.2079 -8.1582 -1.2294 38 1 5.3062 -9.2366 0.4601 39 1 9.3587 -9.4316 -2.1546 40 1 4.3993 -7.0249 3.1822 41 1 2.4939 -5.8520 2.0727 42 1 3.7211 -5.0248 1.0842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100041564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:26 Heat of formation + Delta-G solvation = -17.987746 kcal Electronic energy + Delta-G solvation = -29483.840892 eV Core-core repulsion = 25082.610755 eV Total energy + Delta-G solvation = -4401.230136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.01892 -41.58585 -40.69763 -39.25094 -37.13094 -36.24485 -35.90548 -35.61631 -35.53681 -33.37801 -32.64694 -30.72710 -28.89731 -27.29971 -26.18974 -25.16280 -24.32043 -23.71290 -21.96029 -21.46432 -21.00172 -20.13597 -19.92424 -19.62347 -18.72726 -18.33359 -17.80568 -17.66489 -16.77770 -16.53566 -16.41465 -16.14193 -15.99499 -15.70184 -15.52742 -15.22314 -15.13198 -14.82216 -14.11176 -13.91762 -13.82066 -13.60305 -13.49424 -13.26678 -13.03570 -12.98564 -12.52581 -12.45598 -12.44296 -12.26070 -12.16677 -12.15942 -11.90384 -11.83334 -11.49762 -11.41793 -10.99935 -10.96569 -10.38003 -10.00499 -9.07847 -8.48837 -5.98086 -0.41463 0.26967 1.32191 1.38743 1.40413 1.51867 1.72241 2.00081 2.26562 2.28036 2.42971 2.78511 2.82216 3.15274 3.17740 3.25309 3.59967 3.66791 3.70501 3.95474 3.97990 4.13772 4.33837 4.37761 4.38815 4.40631 4.45560 4.67233 4.68259 4.80596 4.84123 4.93130 5.10373 5.17114 5.31288 5.40485 5.82282 5.97463 6.00521 6.13080 6.56852 6.76400 6.81499 7.10226 7.30076 7.53642 8.09122 8.66642 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.002241 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.266691 B =12490.277824 C =12969.911722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.988 3.012 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.331 4.331 8 H 0.075 0.925 9 N -0.569 5.569 10 C 0.405 3.595 11 O -0.622 6.622 12 C 0.050 3.950 13 N -0.492 5.492 14 C 0.042 3.958 15 C -0.107 4.107 16 C 0.157 3.843 17 H 0.058 0.942 18 N -0.683 5.683 19 C 0.605 3.395 20 O -0.546 6.546 21 C -0.052 4.052 22 C 0.051 3.949 23 N -0.359 5.359 24 O 0.348 5.652 25 N -0.317 5.317 26 C 0.119 3.881 27 H 0.097 0.903 28 O -0.576 6.576 29 C 0.005 3.995 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.028 0.972 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.418 0.582 39 H 0.253 0.747 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 -22.258 0.662 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.093 0.907 9 N -0.206 5.206 10 C 0.192 3.808 11 O -0.510 6.510 12 C -0.082 4.082 13 N -0.215 5.215 14 C -0.086 4.086 15 C -0.146 4.146 16 C 0.052 3.948 17 H 0.076 0.924 18 N -0.334 5.334 19 C 0.388 3.612 20 O -0.422 6.422 21 C -0.217 4.217 22 C -0.135 4.135 23 N -0.084 5.084 24 O 0.121 5.879 25 N -0.036 5.036 26 C 0.059 3.941 27 H 0.114 0.886 28 O -0.384 6.384 29 C -0.124 4.124 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.256 0.744 39 H 0.269 0.731 40 H 0.249 0.751 41 H 0.106 0.894 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.408 -22.963 0.295 24.131 hybrid contribution -0.149 2.737 0.183 2.747 sum 7.259 -20.226 0.478 21.495 Atomic orbital electron populations 1.69667 1.06662 1.29222 1.50174 1.25983 0.96512 1.02281 0.96350 0.84944 0.77928 0.77524 0.78398 1.20191 1.19613 1.19512 1.19631 0.92508 0.84262 1.49709 0.90724 1.42123 1.09415 1.04937 1.64087 1.22231 0.88766 0.87255 0.82528 1.90439 1.15771 1.87601 1.57225 1.22169 0.95201 0.84705 1.06087 1.62541 1.17464 1.39103 1.02411 1.22202 0.96682 0.97152 0.92607 1.21808 0.96794 0.99172 0.96838 1.21023 0.92159 0.86329 0.95291 0.92351 1.45642 1.22755 1.17792 1.47208 1.16662 0.80455 0.84047 0.80040 1.90872 1.70961 1.37139 1.43251 1.26028 0.99182 0.95363 1.01077 1.28194 0.93299 0.91899 1.00071 1.75112 1.12072 1.13881 1.07315 1.85088 1.21506 1.36118 1.45221 1.75362 1.10751 1.00803 1.16665 1.21848 0.89511 0.97677 0.85034 0.88576 1.86503 1.37121 1.97020 1.17787 1.23034 0.96179 0.98702 0.94462 0.91272 0.76900 0.86711 0.86516 0.95347 0.89282 0.90985 0.88213 0.74426 0.73127 0.75100 0.89373 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 2 C -0.01 -0.58 5.50 84.92 0.47 -0.12 16 3 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 8 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 9 N -0.57 -27.96 5.29 -306.99 -1.62 -29.58 16 10 C 0.40 17.88 7.20 87.66 0.63 18.51 16 11 O -0.62 -31.99 11.20 -3.05 -0.03 -32.03 16 12 C 0.05 1.54 5.86 85.56 0.50 2.04 16 13 N -0.49 -13.86 4.86 -900.95 -4.38 -18.23 16 14 C 0.04 1.26 5.09 86.33 0.44 1.70 16 15 C -0.11 -2.62 5.67 30.65 0.17 -2.44 16 16 C 0.16 4.12 2.20 45.07 0.10 4.22 16 17 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 18 N -0.68 -14.87 4.99 -444.61 -2.22 -17.08 16 19 C 0.60 14.74 7.82 86.92 0.68 15.42 16 20 O -0.55 -17.29 16.71 -3.71 -0.06 -17.35 16 21 C -0.05 -0.98 7.56 44.30 0.34 -0.65 16 22 C 0.05 0.76 12.63 87.31 1.10 1.86 16 23 N -0.36 -5.71 12.22 -61.45 -0.75 -6.46 16 24 O 0.35 5.58 11.65 140.85 1.64 7.23 16 25 N -0.32 -5.50 12.13 -52.08 -0.63 -6.13 16 26 C 0.12 2.73 3.14 30.65 0.10 2.83 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 O -0.58 -13.18 13.23 -148.98 -1.97 -15.15 16 29 C 0.01 0.15 4.60 86.32 0.40 0.55 16 30 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.40 18.48 7.90 -92.71 -0.73 17.75 16 32 H 0.11 3.07 8.06 -2.39 -0.02 3.05 16 33 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.03 1.13 6.00 -2.39 -0.01 1.11 16 35 H 0.09 2.37 8.06 -2.39 -0.02 2.35 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.42 7.08 8.46 -92.70 -0.78 6.29 16 39 H 0.25 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.40 5.62 9.08 -74.06 -0.67 4.94 16 41 H 0.09 2.24 8.12 -2.39 -0.02 2.22 16 42 H 0.05 2.00 5.36 -2.39 -0.01 1.99 16 Total: -1.00 -71.64 357.87 -3.05 -74.69 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -1.06 Total: 37.23 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 5.74 Total: 26.29 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -9.32 Total: -125.73 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.43 Total: -57.30 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -71.64 -3.05 -74.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100041564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.701 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds