Wall clock time and date at job start Sat Apr 11 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00186 * 2 1 4 4 O 1.21278 * 120.00177 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00005 * 359.97438 * 3 2 1 6 6 S 1.80992 * 109.47316 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00340 * 180.02562 * 6 5 3 8 8 H 1.08004 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.38791 * 120.00249 * 180.02562 * 7 6 5 10 10 N 1.31630 * 120.00088 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 120.00090 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46982 * 90.00195 * 11 9 7 13 13 H 1.48497 * 109.47113 * 210.00343 * 11 9 7 14 14 H 1.48501 * 109.46934 * 330.00209 * 11 9 7 15 15 C 1.46502 * 119.99804 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.28750 * 179.29983 * 15 2 1 17 17 C 1.54259 * 110.32097 * 57.17673 * 15 2 1 18 18 C 1.54380 * 105.05727 * 240.99980 * 17 15 2 19 19 N 1.48559 * 104.59665 * 23.85363 * 18 17 15 20 20 C 1.39000 * 110.99826 * 200.96035 * 19 18 17 21 21 C 1.39065 * 119.68921 * 59.87655 * 20 19 18 22 22 C 1.38383 * 119.15475 * 179.97438 * 21 20 19 23 23 C 1.38753 * 118.53458 * 0.02562 * 22 21 20 24 24 C 1.38369 * 119.30547 * 359.97438 * 23 22 21 25 25 F 1.35108 * 119.60102 * 179.97438 * 24 23 22 26 26 N 1.32137 * 120.79405 * 359.75323 * 24 23 22 27 27 C 1.48561 * 104.21990 * 320.51451 * 19 18 17 28 28 H 1.09000 * 109.47219 * 270.00547 * 1 2 3 29 29 H 1.08999 * 109.46875 * 29.99855 * 1 2 3 30 30 H 1.08996 * 109.47284 * 150.00656 * 1 2 3 31 31 H 1.09004 * 109.46789 * 300.00539 * 5 3 2 32 32 H 1.08995 * 109.46874 * 59.99946 * 5 3 2 33 33 H 0.97005 * 120.00138 * 179.97438 * 10 9 7 34 34 H 1.08994 * 110.32531 * 359.89300 * 17 15 2 35 35 H 1.08992 * 110.32465 * 122.10538 * 17 15 2 36 36 H 1.09005 * 110.41464 * 142.63601 * 18 17 15 37 37 H 1.08997 * 110.41291 * 265.07229 * 18 17 15 38 38 H 1.08000 * 120.42395 * 359.97438 * 21 20 19 39 39 H 1.08004 * 120.72722 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.34624 * 180.02562 * 23 22 21 41 41 H 1.08990 * 110.41371 * 280.70218 * 27 19 18 42 42 H 1.09004 * 110.40913 * 158.26121 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4416 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9283 6.5080 -0.0019 10 7 1.0916 7.5241 -0.0023 11 14 3.7709 6.8154 -0.0026 12 1 4.2587 6.8960 -1.4028 13 1 4.0598 8.0932 0.6966 14 1 4.4588 5.7012 0.6979 15 6 2.1975 -1.2688 0.0006 16 1 3.2718 -1.0850 -0.0120 17 6 1.7862 -2.1253 -1.2147 18 6 1.1871 -3.4144 -0.6125 19 7 0.7411 -3.0196 0.7485 20 6 0.6169 -4.1311 1.5739 21 6 1.7261 -4.9325 1.8214 22 6 1.5902 -6.0360 2.6453 23 6 0.3448 -6.3027 3.1959 24 6 -0.7169 -5.4635 2.9077 25 9 -1.9323 -5.7179 3.4401 26 7 -0.5554 -4.4138 2.1215 27 6 1.8123 -2.1124 1.2348 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 0.7591 2.5298 -0.8908 32 1 0.7585 2.5302 0.8891 33 1 1.4318 8.4326 -0.0026 34 1 1.0381 -1.6026 -1.8105 35 1 2.6586 -2.3619 -1.8237 36 1 0.3388 -3.7533 -1.2072 37 1 1.9460 -4.1944 -0.5524 38 1 2.6815 -4.6967 1.3764 39 1 2.4349 -6.6755 2.8551 40 1 0.2057 -7.1560 3.8433 41 1 2.6690 -2.6885 1.5839 42 1 1.4346 -1.4707 2.0309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102669668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:30 Heat of formation + Delta-G solvation = -6.834847 kcal Electronic energy + Delta-G solvation = -26311.004991 eV Core-core repulsion = 22333.091390 eV Total energy + Delta-G solvation = -3977.913601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.42280 -41.33041 -39.87684 -38.27973 -35.19371 -33.30026 -32.42752 -32.29474 -29.92887 -29.34949 -28.23985 -26.50605 -25.59741 -24.35614 -23.83278 -21.80202 -21.39574 -19.14563 -18.55540 -17.99514 -17.60650 -16.99272 -16.76662 -16.51014 -16.44796 -15.76414 -15.48708 -15.12145 -14.93846 -14.52625 -14.17493 -13.78891 -13.75084 -13.69902 -13.23195 -13.08827 -12.92353 -12.78291 -12.59786 -12.41249 -12.28963 -12.17379 -11.96389 -11.73395 -11.24681 -11.18789 -11.00156 -10.58084 -10.53800 -10.46794 -9.84906 -9.48678 -9.39244 -9.07190 -8.99274 -8.59868 -8.47935 -6.90781 -6.27511 -3.99242 0.27641 0.57419 2.62660 2.70945 2.89490 2.96609 3.19485 3.33697 3.50910 3.55671 3.60393 4.05868 4.11016 4.26298 4.33953 4.39015 4.42354 4.56151 4.67837 4.71666 4.85795 4.91612 5.03471 5.09543 5.11485 5.21341 5.26210 5.34412 5.40132 5.44837 5.46852 5.53702 5.66097 5.75247 5.84162 5.85772 5.91981 6.05503 6.15482 6.51799 6.59918 7.30314 7.45806 7.95552 8.41956 8.43554 9.18614 10.81707 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002160 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.346308 B =12957.520570 C =13367.177606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.611 5.611 3 C 0.534 3.466 4 O -0.522 6.522 5 C -0.120 4.120 6 S -0.145 6.145 7 C -0.520 4.520 8 H 0.088 0.912 9 C 0.095 3.905 10 N -0.880 5.880 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.275 1.275 14 H -0.235 1.235 15 C 0.142 3.858 16 H 0.115 0.885 17 C -0.135 4.135 18 C 0.043 3.957 19 N -0.472 5.472 20 C 0.342 3.658 21 C -0.214 4.214 22 C -0.035 4.035 23 C -0.201 4.201 24 C 0.321 3.679 25 F -0.110 7.110 26 N -0.495 5.495 27 C 0.031 3.969 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.270 0.730 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.064 0.936 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 -31.392 2.491 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.347 5.347 3 C 0.322 3.678 4 O -0.397 6.397 5 C -0.270 4.270 6 S 0.081 5.919 7 C -0.667 4.667 8 H 0.106 0.894 9 C -0.114 4.114 10 N -0.517 5.517 11 Si 0.682 3.318 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.037 3.963 16 H 0.133 0.867 17 C -0.174 4.174 18 C -0.084 4.084 19 N -0.195 5.195 20 C 0.111 3.889 21 C -0.237 4.237 22 C -0.061 4.061 23 C -0.223 4.223 24 C 0.167 3.833 25 F -0.089 7.089 26 N -0.210 5.210 27 C -0.096 4.096 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.082 0.918 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.448 -30.389 2.347 30.483 hybrid contribution 0.139 -0.596 0.403 0.733 sum 0.587 -30.985 2.750 31.112 Atomic orbital electron populations 1.21762 0.78815 1.03172 1.02319 1.47833 1.07224 1.04643 1.74956 1.20354 0.87882 0.84695 0.74897 1.90674 1.13751 1.86845 1.48411 1.23306 1.03019 0.94970 1.05727 1.84751 1.12071 0.97621 1.97426 1.22307 0.94882 0.90860 1.58677 0.89372 1.24717 0.98524 0.94890 0.93233 1.69941 1.34774 0.98863 1.48120 0.86729 0.85404 0.79782 0.79893 1.19238 1.19989 1.15936 1.21660 0.98493 0.83318 0.92840 0.86741 1.22774 1.01927 0.94825 0.97888 1.23276 0.99691 0.97392 0.88008 1.62237 1.43956 1.11717 1.01606 1.19330 0.86841 0.90725 0.91988 1.22626 1.01099 0.97567 1.02374 1.21389 0.96818 0.95341 0.92594 1.21871 0.92912 1.02539 1.04952 1.17911 0.81308 0.91375 0.92723 1.91661 1.41780 1.92528 1.82890 1.66490 1.27351 1.17473 1.09708 1.23705 0.92088 0.94908 0.98939 0.92535 0.90988 0.90365 0.88457 0.88435 0.91962 0.89408 0.89724 0.89157 0.92660 0.83796 0.83442 0.83236 0.91828 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 9.28 59.85 0.56 1.47 16 2 N -0.61 -7.99 2.75 -172.35 -0.47 -8.46 16 3 C 0.53 9.40 7.69 -10.99 -0.08 9.31 16 4 O -0.52 -10.87 15.22 5.56 0.08 -10.79 16 5 C -0.12 -2.33 4.71 36.01 0.17 -2.16 16 6 S -0.15 -3.67 18.55 -107.50 -1.99 -5.67 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 10 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 11 Si 0.86 21.79 27.74 -169.99 -4.72 17.07 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 15 C 0.14 1.49 3.46 -66.55 -0.23 1.26 16 16 H 0.11 1.35 6.96 -51.93 -0.36 0.99 16 17 C -0.14 -1.07 6.17 -25.35 -0.16 -1.23 16 18 C 0.04 0.30 6.35 -2.18 -0.01 0.29 16 19 N -0.47 -4.36 5.14 -168.80 -0.87 -5.23 16 20 C 0.34 3.21 5.91 -155.01 -0.92 2.29 16 21 C -0.21 -1.39 8.03 -39.22 -0.32 -1.70 16 22 C -0.04 -0.18 10.16 -39.34 -0.40 -0.58 16 23 C -0.20 -1.25 10.08 -39.34 -0.40 -1.65 16 24 C 0.32 3.07 8.41 -17.37 -0.15 2.92 16 25 F -0.11 -1.11 17.29 2.25 0.04 -1.07 16 26 N -0.50 -5.65 10.41 -12.78 -0.13 -5.78 16 27 C 0.03 0.29 5.56 -2.18 -0.01 0.28 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 30 H 0.08 0.77 6.56 -51.93 -0.34 0.43 16 31 H 0.10 1.77 7.40 -51.91 -0.38 1.39 16 32 H 0.10 1.81 8.11 -51.92 -0.42 1.39 16 33 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.09 0.75 6.87 -51.93 -0.36 0.39 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.31 6.74 -51.93 -0.35 -0.04 16 38 H 0.14 0.66 6.72 -52.49 -0.35 0.31 16 39 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 40 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 41 H 0.06 0.48 6.45 -51.93 -0.34 0.15 16 42 H 0.10 1.06 8.06 -51.93 -0.42 0.64 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -34.97 360.54 -8.93 -43.90 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.35 Total: -2.08 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.73 Total: -1.48 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.70 Total: -45.32 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.97 -8.93 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.063 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds