Wall clock time and date at job start Sat Apr 11 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00186 * 2 1 4 4 O 1.21278 * 120.00177 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00005 * 359.97438 * 3 2 1 6 6 S 1.80992 * 109.47316 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00340 * 180.02562 * 6 5 3 8 8 H 1.08004 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.38791 * 120.00249 * 180.02562 * 7 6 5 10 10 N 1.31630 * 120.00088 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 120.00090 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46982 * 90.00195 * 11 9 7 13 13 H 1.48497 * 109.47113 * 210.00343 * 11 9 7 14 14 H 1.48501 * 109.46934 * 330.00209 * 11 9 7 15 15 C 1.46502 * 119.99804 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.28750 * 179.29983 * 15 2 1 17 17 C 1.54259 * 110.32097 * 57.17673 * 15 2 1 18 18 C 1.54380 * 105.05727 * 240.99980 * 17 15 2 19 19 N 1.48559 * 104.59665 * 23.85363 * 18 17 15 20 20 C 1.39000 * 110.99826 * 200.96035 * 19 18 17 21 21 C 1.39065 * 119.68921 * 59.87655 * 20 19 18 22 22 C 1.38383 * 119.15475 * 179.97438 * 21 20 19 23 23 C 1.38753 * 118.53458 * 0.02562 * 22 21 20 24 24 C 1.38369 * 119.30547 * 359.97438 * 23 22 21 25 25 F 1.35108 * 119.60102 * 179.97438 * 24 23 22 26 26 N 1.32137 * 120.79405 * 359.75323 * 24 23 22 27 27 C 1.48561 * 104.21990 * 320.51451 * 19 18 17 28 28 H 1.09000 * 109.47219 * 270.00547 * 1 2 3 29 29 H 1.08999 * 109.46875 * 29.99855 * 1 2 3 30 30 H 1.08996 * 109.47284 * 150.00656 * 1 2 3 31 31 H 1.09004 * 109.46789 * 300.00539 * 5 3 2 32 32 H 1.08995 * 109.46874 * 59.99946 * 5 3 2 33 33 H 0.97005 * 120.00138 * 179.97438 * 10 9 7 34 34 H 1.08994 * 110.32531 * 359.89300 * 17 15 2 35 35 H 1.08992 * 110.32465 * 122.10538 * 17 15 2 36 36 H 1.09005 * 110.41464 * 142.63601 * 18 17 15 37 37 H 1.08997 * 110.41291 * 265.07229 * 18 17 15 38 38 H 1.08000 * 120.42395 * 359.97438 * 21 20 19 39 39 H 1.08004 * 120.72722 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.34624 * 180.02562 * 23 22 21 41 41 H 1.08990 * 110.41371 * 280.70218 * 27 19 18 42 42 H 1.09004 * 110.40913 * 158.26121 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4416 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9283 6.5080 -0.0019 10 7 1.0916 7.5241 -0.0023 11 14 3.7709 6.8154 -0.0026 12 1 4.2587 6.8960 -1.4028 13 1 4.0598 8.0932 0.6966 14 1 4.4588 5.7012 0.6979 15 6 2.1975 -1.2688 0.0006 16 1 3.2718 -1.0850 -0.0120 17 6 1.7862 -2.1253 -1.2147 18 6 1.1871 -3.4144 -0.6125 19 7 0.7411 -3.0196 0.7485 20 6 0.6169 -4.1311 1.5739 21 6 1.7261 -4.9325 1.8214 22 6 1.5902 -6.0360 2.6453 23 6 0.3448 -6.3027 3.1959 24 6 -0.7169 -5.4635 2.9077 25 9 -1.9323 -5.7179 3.4401 26 7 -0.5554 -4.4138 2.1215 27 6 1.8123 -2.1124 1.2348 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 0.7591 2.5298 -0.8908 32 1 0.7585 2.5302 0.8891 33 1 1.4318 8.4326 -0.0026 34 1 1.0381 -1.6026 -1.8105 35 1 2.6586 -2.3619 -1.8237 36 1 0.3388 -3.7533 -1.2072 37 1 1.9460 -4.1944 -0.5524 38 1 2.6815 -4.6967 1.3764 39 1 2.4349 -6.6755 2.8551 40 1 0.2057 -7.1560 3.8433 41 1 2.6690 -2.6885 1.5839 42 1 1.4346 -1.4707 2.0309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102669668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:30 Heat of formation + Delta-G solvation = -30.519859 kcal Electronic energy + Delta-G solvation = -26312.032050 eV Core-core repulsion = 22333.091390 eV Total energy + Delta-G solvation = -3978.940660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.08599 -41.99469 -40.92016 -39.19763 -36.28464 -34.66990 -33.86007 -33.08657 -31.05073 -29.94800 -29.28813 -27.85970 -27.50450 -24.96975 -24.37521 -22.58022 -22.22315 -20.37586 -19.61044 -19.13647 -18.63661 -18.15438 -17.41713 -17.23989 -17.14096 -17.08039 -16.77279 -16.64520 -16.05923 -15.60417 -15.18247 -14.95264 -14.72587 -14.67533 -14.32221 -14.19017 -13.89415 -13.73302 -13.59817 -13.35340 -13.15276 -13.14084 -13.07025 -13.02245 -12.91649 -12.65045 -12.42158 -11.90487 -11.85815 -11.16678 -11.08466 -11.05749 -10.91061 -10.53151 -9.96641 -9.77114 -9.59336 -8.99671 -8.51041 -6.22153 -0.25804 0.08545 0.98047 1.31976 1.46134 1.50705 1.54828 2.04018 2.08089 2.25571 2.41499 2.68574 2.86980 2.99216 3.37297 3.60291 3.68630 3.73718 3.76796 3.95033 4.08649 4.13917 4.16910 4.18251 4.22790 4.35258 4.47084 4.55580 4.58892 4.65655 4.68864 4.80108 4.89393 4.94891 4.98631 5.00945 5.11940 5.34579 5.45849 5.62087 5.71074 5.93921 6.11741 6.24270 6.73203 6.93742 7.07375 8.61422 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002160 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.346308 B =12957.520570 C =13367.177606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.536 3.464 4 O -0.559 6.559 5 C -0.108 4.108 6 S -0.172 6.172 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.044 3.956 10 N -0.917 5.917 11 Si 0.916 3.084 12 H -0.261 1.261 13 H -0.260 1.260 14 H -0.236 1.236 15 C 0.136 3.864 16 H 0.104 0.896 17 C -0.126 4.126 18 C 0.049 3.951 19 N -0.488 5.488 20 C 0.319 3.681 21 C -0.206 4.206 22 C -0.026 4.026 23 C -0.189 4.189 24 C 0.290 3.710 25 F -0.125 7.125 26 N -0.539 5.539 27 C 0.041 3.959 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.277 0.723 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.168 0.832 39 H 0.189 0.811 40 H 0.177 0.823 41 H 0.085 0.915 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -34.308 2.434 34.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.324 3.676 4 O -0.437 6.437 5 C -0.258 4.258 6 S 0.055 5.945 7 C -0.677 4.677 8 H 0.078 0.922 9 C -0.162 4.162 10 N -0.555 5.555 11 Si 0.738 3.262 12 H -0.186 1.186 13 H -0.184 1.184 14 H -0.160 1.160 15 C 0.032 3.968 16 H 0.122 0.878 17 C -0.165 4.165 18 C -0.077 4.077 19 N -0.212 5.212 20 C 0.089 3.911 21 C -0.229 4.229 22 C -0.051 4.051 23 C -0.209 4.209 24 C 0.136 3.864 25 F -0.104 7.104 26 N -0.255 5.255 27 C -0.087 4.087 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.185 0.815 39 H 0.206 0.794 40 H 0.194 0.806 41 H 0.103 0.897 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.185 -33.346 2.289 33.496 hybrid contribution -0.545 0.142 0.439 0.714 sum 1.639 -33.204 2.728 33.356 Atomic orbital electron populations 1.21874 0.77465 1.04077 1.02620 1.47806 1.08024 1.04355 1.72804 1.19953 0.87246 0.85154 0.75252 1.90659 1.14978 1.87319 1.50761 1.23289 1.01833 0.93862 1.06839 1.84608 1.13627 0.98737 1.97555 1.22454 0.94353 0.92586 1.58268 0.92169 1.25600 1.02947 0.94730 0.92880 1.70024 1.36848 0.99531 1.49143 0.85837 0.79995 0.80076 0.80275 1.18562 1.18394 1.15955 1.21882 0.97588 0.82317 0.95033 0.87841 1.22725 1.02491 0.94571 0.96713 1.23288 1.00255 0.97296 0.86841 1.62103 1.44149 1.12421 1.02484 1.19474 0.87296 0.91500 0.92825 1.22874 1.00903 0.97143 1.01953 1.21886 0.97348 0.94941 0.90937 1.22211 0.92259 1.02182 1.04291 1.18294 0.81839 0.92379 0.93892 1.91616 1.42850 1.92680 1.83237 1.66308 1.29151 1.18988 1.11090 1.23539 0.92872 0.94793 0.97485 0.92512 0.90887 0.88661 0.87135 0.87593 0.91373 0.89979 0.88003 0.89095 0.90419 0.81470 0.79391 0.80574 0.89707 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.73 9.28 127.77 1.19 2.92 16 2 N -0.60 -15.03 2.75 -817.59 -2.24 -17.28 16 3 C 0.54 18.65 7.69 87.66 0.67 19.32 16 4 O -0.56 -23.15 15.22 -3.02 -0.05 -23.20 16 5 C -0.11 -4.17 4.71 71.24 0.34 -3.84 16 6 S -0.17 -8.74 18.55 -56.49 -1.05 -9.79 16 7 C -0.53 -31.11 10.04 67.95 0.68 -30.43 16 8 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 9 C 0.04 2.58 5.50 84.86 0.47 3.05 16 10 N -0.92 -56.32 13.97 21.65 0.30 -56.02 16 11 Si 0.92 45.12 27.74 68.60 1.90 47.02 16 12 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 13 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 14 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 15 C 0.14 2.65 3.46 45.89 0.16 2.81 16 16 H 0.10 2.31 6.96 -2.39 -0.02 2.30 16 17 C -0.13 -1.70 6.17 31.49 0.19 -1.51 16 18 C 0.05 0.57 6.35 86.45 0.55 1.12 16 19 N -0.49 -8.21 5.14 -687.95 -3.53 -11.75 16 20 C 0.32 5.46 5.91 133.03 0.79 6.25 16 21 C -0.21 -1.97 8.03 22.50 0.18 -1.79 16 22 C -0.03 -0.15 10.16 22.43 0.23 0.07 16 23 C -0.19 -1.85 10.08 22.42 0.23 -1.62 16 24 C 0.29 5.37 8.41 84.68 0.71 6.08 16 25 F -0.12 -2.59 17.29 44.97 0.78 -1.81 16 26 N -0.54 -12.14 10.41 -194.33 -2.02 -14.16 16 27 C 0.04 0.69 5.56 86.45 0.48 1.17 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.55 6.44 -2.39 -0.02 1.53 16 30 H 0.09 1.73 6.56 -2.39 -0.02 1.72 16 31 H 0.11 3.99 7.40 -2.39 -0.02 3.97 16 32 H 0.11 3.92 8.11 -2.40 -0.02 3.90 16 33 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 34 H 0.08 1.23 6.87 -2.39 -0.02 1.22 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 0.56 6.74 -2.39 -0.02 0.55 16 38 H 0.17 0.76 6.72 -2.91 -0.02 0.74 16 39 H 0.19 -0.37 8.06 -2.91 -0.02 -0.40 16 40 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 41 H 0.08 1.07 6.45 -2.39 -0.02 1.05 16 42 H 0.07 1.59 8.06 -2.38 -0.02 1.57 16 Total: -1.00 -78.51 360.54 1.96 -76.55 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.01 Total: 6.82 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.86 Total: 3.60 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -7.50 Total: -99.20 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.20 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.02 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.79 kcal Total: -78.51 1.96 -76.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.033 kcal (2) G-P(sol) polarization free energy of solvation -78.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds